Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007713

Physical Location & Seq

Genomic Coordinates Forward (+)

35915974 .. 35920971

Gene Structure 4998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47380.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGAAGAACAACCAGTATGATGCAAGGACCTTTGCTTTCATGCTAAGAGCCATGATGGAGAATTTTGAAAAGGAAATCAGAGAGTCTAAGTTTTCAGAGCTGATGAACAAACACTTTGCGGCAAGCTCCGTACCCAAAGGCATCCACTGTCTGTCTTTGCGTTTGACTGATGAATATTCATCCAATGCTCATGCCCGGAAGCAATTGCCTCCTCCAGAGTTACTTCCATTGCTCTCTGACAACTCTTACCACCACTTTATCCTATCAACTGATAACATATTGGCTGCTTCAGTTGTTGTTGCTTCTGCTGTCCAGTCATCTCTGAGACCTGAAAAGATAGTCTTCCATGTCATTACTGACAAGAAAACTTACGCTGGCATGCACTCATGGTTTGCATTAAACCCTGTCTCCCCTGCTATTGTTGAAGTGAAAGGTGTCCACCAGTTTGATTGGTTAACAAGAGAAAATGTTCCAGTTCTTGAAGCTGTTGAGAATCAAAATGGGATCAGGGATTATTACCATGGGAATCATCTTGCCGGGGCCAATCTCAGTGCTACAACTCCACGAACTTTCGCATCAAAATTGCAGGCTAGAAGTCCCAAATACATATCCATACTCAATCATCTTCGCATATATATACCAGAGCTATTCCCGAACCTTGACAAGGTGGTTTTCCTAGATGATGATGTTGTGATTCAACGAGATTTGTCGCCACTTTGGGACATTGACCTTGGGGGAAAGGTCAATGGAGCGGTTGAAACTTGTAAAGGTGAAGATGAGTGGGTAATGTCCAAGCGATTCAGGAACTACTTCAACTTTTCCCATCCCCTCGTAGCAAAGAACTTGGACCCTGAAGAATGTGCATGGGCGTATGGGATGAATATCTTTGATCTTAGTACCTGGAGAAAGACAAATATAAGAGAAACTTATCATTCCTGGCTGAAAGAGAATCTGAAGTCAAACCTCACTATATGGAAGCTTGGAACCCTACCACCAGCTTTAATTGCATTTAGGGGTCATGTTCACCCAATTGATCCATCGTGGCATTTGCTTGGATTGGGTTATCAAAATAACACCAGCATTGAAAGTATTGAAAAGGCTGCAGTTATCCACTATAATGGTCAGTCAAAACCCTGGTTGCAGATTGGCTTTGAGCATCTTCGGCCATTCTGGACCAAATACGTCAATTACTCCAATGATTTTGTTAGGAACTGCCACATCATGGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0047262 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090406 GO:0120025 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

411

Amino Acids

47.11

Weight (kDa)

7.33

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	165 - 497	4e-77	Glycosyl transferase family 8
Glyco_transf_24	PF18404	315 - 378	7.2e-06	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01040 AT3G01040 AT3G01040 AT5G15470
fragaria_vesca	FvH4_6g47380 FvH4_6g47380 FvH4_6g47380 FvH4_6g47380
malus_domestica	MD00G1171900.v1.1 MD09G1061900.v1.1
prunus_persica	Prupe.3G258200_v2.0.a1
pyrus_communis	pycom111g05220 pycom17g05600
rosa_chinensis	RchiOBHm_Chr2g0166431
rosa_laevigata	RLG00000021618
rosa_multiflora	Rmu_sc0003016.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084910
rosa_rugosa	Rorug02G0522800 Rorug02G0522900 Rorug02G0523000
rosa_samantha	Rh2BG601100 Rh2CG571700 Rh2DG611300
rosa_wichuraiana	Rw2G049080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1222
AccBSI	CCGCTC	1 cut(s)	752
AciI	CCGC	2 cut(s)	119, 752
AclWI	GGATC	2 cut(s)	512, 1028
AcoI	YGGCCR	1 cut(s)	1163
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	3 cut(s)	273, 873, 974
AfaI	GTAC	2 cut(s)	132, 898
AfiI	CCNNNNNNNGG	2 cut(s)	664, 1222
AgsI	TTSAA	8 cut(s)	68, 425, 482, 698, 758, 814, 1085, 1094
AjnI	CCWGG	3 cut(s)	899, 935, 1133
AluBI	AGCT	6 cut(s)	100, 126, 485, 646, 979, 998
AluI	AGCT	6 cut(s)	100, 126, 485, 646, 979, 998
Alw26I	GTCTC	2 cut(s)	319, 412
AlwI	GGATC	2 cut(s)	512, 1028
AoxI	GGCC	2 cut(s)	540, 1163
ApeKI	GCWGC	2 cut(s)	284, 1100
ApoI	RAATTY	1 cut(s)	61
Asp700I	GAANNNNTTC	2 cut(s)	468, 809
AspS9I	GGNCC	4 cut(s)	27, 540, 847, 1173
AsuC2I	CCSGG	2 cut(s)	196, 538
AsuHPI	GGTGA	2 cut(s)	782, 1016
AvaII	GGWCC	3 cut(s)	27, 847, 1173
BbsI	GAAGAC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	271, 1087
BccI	CCATC	3 cut(s)	49, 831, 1045
BciT130I	CCWGG	3 cut(s)	901, 937, 1135
BcnI	CCSGG	2 cut(s)	196, 538
BcoDI	GTCTC	2 cut(s)	319, 412
BfaI	CTAG	2 cut(s)	591, 677
BfmI	CTRYAG	1 cut(s)	1101
BisI	GCNGC	3 cut(s)	120, 285, 1101
BlsI	GCNGC	3 cut(s)	121, 286, 1102
Bme1390I	CCNGG	5 cut(s)	196, 538, 901, 937, 1135
Bme18I	GGWCC	3 cut(s)	27, 847, 1173
BmgT120I	GGNCC	4 cut(s)	27, 540, 847, 1173
BmiI	GGNNCC	3 cut(s)	541, 849, 985
BmrFI	CCNGG	5 cut(s)	196, 538, 901, 937, 1135
BmsI	GCATC	4 cut(s)	10, 150, 584, 1165
BpiI	GAAGAC	1 cut(s)	334
BpmI	CTGGAG	2 cut(s)	198, 922
BpuMI	CCSGG	2 cut(s)	196, 538
BsaBI	GATNNNNATC	1 cut(s)	881
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	4 cut(s)	520, 537, 730, 1133
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	664, 1222
Bse1I	ACTGG	4 cut(s)	13, 313, 442, 473
Bse3DI	GCAATG	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	881
BseBI	CCWGG	3 cut(s)	901, 937, 1135
BseDI	CCNNGG	4 cut(s)	520, 537, 730, 1133
BseGI	GGATG	4 cut(s)	141, 179, 823, 882
BseJI	GATNNNNATC	1 cut(s)	881
BseLI	CCNNNNNNNGG	2 cut(s)	664, 1222
BseMI	GCAATG	1 cut(s)	227
BseMII	CTCAG	2 cut(s)	314, 562
BseNI	ACTGG	4 cut(s)	13, 313, 442, 473
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	271, 1087
BshFI	GGCC	2 cut(s)	542, 1165
BsiSI	CCGG	2 cut(s)	196, 537
BslFI	GGGAC	2 cut(s)	582, 734
BslI	CCNNNNNNNGG	2 cut(s)	664, 1222
BsmAI	GTCTC	2 cut(s)	319, 412
BsmFI	GGGAC	2 cut(s)	582, 734
BsnI	GGCC	2 cut(s)	542, 1165
Bso31I	GGTCTC	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	504, 889, 1033
Bsp19I	CCATGG	1 cut(s)	520
BspACI	CCGC	2 cut(s)	119, 752
BspANI	GGCC	2 cut(s)	542, 1165
BspCNI	CTCAG	2 cut(s)	315, 561
BspLI	GGNNCC	3 cut(s)	541, 849, 985
BspMAI	CTGCAG	1 cut(s)	1105
BspPI	GGATC	2 cut(s)	512, 1028
BspTNI	GGTCTC	1 cut(s)	319
BsrBI	CCGCTC	1 cut(s)	752
BsrDI	GCAATG	1 cut(s)	227
BsrI	ACTGG	4 cut(s)	13, 313, 442, 473
BssECI	CCNNGG	4 cut(s)	520, 537, 730, 1133
BssMI	GATC	3 cut(s)	504, 889, 1033
BssT1I	CCWWGG	2 cut(s)	520, 730
Bst2UI	CCWGG	3 cut(s)	901, 937, 1135
Bst4CI	ACNGT	1 cut(s)	149
BstC8I	GCNNGC	4 cut(s)	124, 376, 380, 588
BstDEI	CTNAG	5 cut(s)	44, 87, 323, 548, 893
BstDSI	CCRYGG	1 cut(s)	520
BstENI	CCTNNNNNAGG	1 cut(s)	662
BstF5I	GGATG	4 cut(s)	141, 179, 823, 882
BstKTI	GATC	3 cut(s)	507, 892, 1036
BstMAI	GTCTC	2 cut(s)	319, 412
BstMBI	GATC	3 cut(s)	504, 889, 1033
BstMWI	GCNNNNNNNGC	2 cut(s)	1004, 1162
BstNI	CCWGG	3 cut(s)	901, 937, 1135
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	5 cut(s)	194, 536, 899, 935, 1133
BstSFI	CTRYAG	1 cut(s)	1101
BstV1I	GCAGC	2 cut(s)	271, 1087
BstV2I	GAAGAC	1 cut(s)	334
BstXI	CCANNNNNNTGG	1 cut(s)	1118
BsuRI	GGCC	2 cut(s)	542, 1165
BtgI	CCRYGG	1 cut(s)	520
BtsCI	GGATG	4 cut(s)	141, 179, 823, 882
BtsIMutI	CAGTG	2 cut(s)	145, 556
Cac8I	GCNNGC	4 cut(s)	124, 376, 380, 588
Cfr13I	GGNCC	4 cut(s)	27, 540, 847, 1173
Csp6I	GTAC	2 cut(s)	131, 897
CviQI	GTAC	2 cut(s)	131, 897
DdeI	CTNAG	5 cut(s)	44, 87, 323, 548, 893
DpnI	GATC	3 cut(s)	506, 891, 1035
DpnII	GATC	3 cut(s)	504, 889, 1033
EaeI	YGGCCR	1 cut(s)	1163
Eco130I	CCWWGG	2 cut(s)	520, 730
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	3 cut(s)	27, 847, 1173
Eco57I	CTGAAG	3 cut(s)	273, 873, 974
EcoNI	CCTNNNNNAGG	1 cut(s)	662
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	3 cut(s)	899, 935, 1133
EcoT14I	CCWWGG	2 cut(s)	520, 730
ErhI	CCWWGG	2 cut(s)	520, 730
FalI	AAGNNNNNCTT	4 cut(s)	326, 358, 910, 942
FaqI	GGGAC	2 cut(s)	582, 734
Fnu4HI	GCNGC	3 cut(s)	120, 285, 1101
FokI	GGATG	4 cut(s)	128, 166, 810, 889
Fsp4HI	GCNGC	3 cut(s)	120, 285, 1101
FspBI	CTAG	2 cut(s)	591, 677
GluI	GCNGC	3 cut(s)	120, 285, 1101
GsuI	CTGGAG	2 cut(s)	198, 922
HaeIII	GGCC	2 cut(s)	542, 1165
HapII	CCGG	2 cut(s)	196, 537
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HindIII	AAGCTT	1 cut(s)	977
HinfI	GANTC	7 cut(s)	83, 493, 526, 694, 798, 949, 1226
HpaI	GTTAAC	1 cut(s)	456
HpaII	CCGG	2 cut(s)	196, 537
HphI	GGTGA	2 cut(s)	782, 1016
Hpy166II	GTNNAC	3 cut(s)	439, 456, 1024
Hpy188I	TCNGA	5 cut(s)	80, 97, 238, 324, 954
Hpy188III	TCNNGA	5 cut(s)	215, 479, 652, 802, 1171
Hpy8I	GTNNAC	3 cut(s)	439, 456, 1024
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	1182
HpyCH4V	TGCA	8 cut(s)	23, 382, 395, 586, 863, 1007, 1103, 1141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1004, 1162
HpyF3I	CTNAG	5 cut(s)	44, 87, 323, 548, 893
HpySE526I	ACGT	1 cut(s)	1182
KspAI	GTTAAC	1 cut(s)	456
Kzo9I	GATC	3 cut(s)	504, 889, 1033
LmnI	GCTCC	2 cut(s)	131, 749
Lsp1109I	GCAGC	2 cut(s)	271, 1087
LweI	GCATC	4 cut(s)	10, 150, 584, 1165
MaeI	CTAG	2 cut(s)	591, 677
MaeII	ACGT	1 cut(s)	1182
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	3 cut(s)	506, 891, 1035
MbiI	CCGCTC	1 cut(s)	752
MboI	GATC	3 cut(s)	504, 889, 1033
MboII	GAAGA	6 cut(s)	16, 334, 617, 785, 866, 1151
MfeI	CAATTG	2 cut(s)	203, 1029
MluCI	AATT	6 cut(s)	61, 203, 581, 1002, 1029, 1186
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	4 cut(s)	219, 222, 839, 974
MroXI	GAANNNNTTC	2 cut(s)	468, 809
MseI	TTAA	3 cut(s)	398, 455, 1001
MslI	CAYNNNNRTG	1 cut(s)	1116
MspI	CCGG	2 cut(s)	196, 537
MspR9I	CCNGG	5 cut(s)	196, 538, 901, 937, 1135
MunI	CAATTG	2 cut(s)	203, 1029
MvaI	CCWGG	3 cut(s)	901, 937, 1135
MwoI	GCNNNNNNNGC	2 cut(s)	1004, 1162
NciI	CCSGG	2 cut(s)	196, 538
NcoI	CCATGG	1 cut(s)	520
NdeII	GATC	3 cut(s)	504, 889, 1033
NlaIV	GGNNCC	3 cut(s)	541, 849, 985
NspI	RCATGY	1 cut(s)	382
PaeI	GCATGC	1 cut(s)	382
PdmI	GAANNNNTTC	2 cut(s)	468, 809
PfeI	GAWTC	6 cut(s)	493, 526, 694, 798, 949, 1226
PflMI	CCANNNNNTGG	1 cut(s)	1222
PkrI	GCNGC	3 cut(s)	121, 286, 1102
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	3 cut(s)	899, 935, 1133
PspGI	CCWGG	3 cut(s)	899, 935, 1133
PspN4I	GGNNCC	3 cut(s)	541, 849, 985
PspPI	GGNCC	4 cut(s)	27, 540, 847, 1173
PspPPI	RGGWCCY	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	1105
RsaI	GTAC	2 cut(s)	132, 898
RsaNI	GTAC	2 cut(s)	131, 897
RseI	CAYNNNNRTG	1 cut(s)	1116
SaqAI	TTAA	3 cut(s)	398, 455, 1001
SatI	GCNGC	3 cut(s)	120, 285, 1101
Sau3AI	GATC	3 cut(s)	504, 889, 1033
Sau96I	GGNCC	4 cut(s)	27, 540, 847, 1173
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	5 cut(s)	196, 538, 901, 937, 1135
SfaNI	GCATC	4 cut(s)	10, 150, 584, 1165
SfcI	CTRYAG	1 cut(s)	1101
SinI	GGWCC	3 cut(s)	27, 847, 1173
SmiMI	CAYNNNNRTG	1 cut(s)	1116
SphI	GCATGC	1 cut(s)	382
Sse9I	AATT	6 cut(s)	61, 203, 581, 1002, 1029, 1186
SsiI	CCGC	2 cut(s)	119, 752
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	2 cut(s)	591, 677
StyD4I	CCNGG	5 cut(s)	194, 536, 899, 935, 1133
StyI	CCWWGG	2 cut(s)	520, 730
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	1185
TasI	AATT	6 cut(s)	61, 203, 581, 1002, 1029, 1186
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	6 cut(s)	493, 526, 694, 798, 949, 1226
Tru1I	TTAA	3 cut(s)	398, 455, 1001
Tru9I	TTAA	3 cut(s)	398, 455, 1001
TscAI	CASTG	2 cut(s)	152, 556
TseI	GCWGC	2 cut(s)	284, 1100
TspDTI	ATGAA	6 cut(s)	17, 28, 119, 168, 186, 893
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	152, 556
Van91I	CCANNNNNTGG	1 cut(s)	1222
VpaK11BI	GGWCC	3 cut(s)	27, 847, 1173
XagI	CCTNNNNNAGG	1 cut(s)	662
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	1 cut(s)	382
XmnI	GAANNNNTTC	2 cut(s)	468, 809
XspI	CTAG	2 cut(s)	591, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.