Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010161

Physical Location & Seq

Genomic Coordinates Forward (+)

151725 .. 153263

Gene Structure 1539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAGATGGAGAATCACCGCCCCGGCAGTTTCACCTACATGGGCCGCAAATTCAGCGATTTAAGTCTCAACGATGACTCCTCTGCTTTCAGCGATTGTAACAGCGACAGATCCGGCGAATTCCCCACTGCTTCCTCCGAGAGCCGTCGTCTCCTCCTCTCTTGCGCCTCTGAGAATTCCGATGATCTCATCAATCATCTCGTGTCGCATCTTGATTCCTCCTATTCGATCGATGAGCAGAAGCAAGCTGCTATGGAGATCAGGCTCTTATCCAAGAACAAACCTGAGAATCGGATCAAAATCGCCAAGGCCGGTGCGATTAAGCCGTTGATTTCTCTGATCTCTTCTTCGGATCTTCAGCTTCAGGAGTATGGTGTCACTGCAATCTTGAATCTATCTCTCTGCGACGAGAACAAAGAGTCGATTGCTTCTTCCGGTGCGATTAAGCCGCTTGTCAGGGCTTTGAAAATGGGAACACCGACTGCTAAAGAGAACGCTGCTTGTGCTCTGCTCCGTCTATCGCAGATCGAGGAGAACAAAGTCGCCATCGGGAGATCCGGAGCGATTCCTCTGTTGGTGAACCTTCTAGAAACAGGCGGATTCAGAGCGAAGAAGGACGCGTCGACGGCTCTGTACTCGTTGTGCTCAGCTAAAGAGAACAAAATCAGAGCCGTGCAATCGGGAATTATGAAGCCGCTTGTTGAATTGATGGCGGATTTCGGATCAAACATGGTGGATAAATCGGCGTTTGTGATGAGTCTGTTAATGTCGGTGCCGGAATCGAAACCGGCGATTGTGGAGGAAGGAGGAGTTCCGGTGCTGGTGGAGATAGTAGAGGTGGGAACACAGAGACAGAAAGAGATGGCTGTGTCGATATTGCTACAGCTTTGTGAGGAGAGTGTTGTGTATAGAACAATGGTGGCTAGAGAAGGAGCGATACCTCCGCTAGTGGCTCTGTCGCAGGCAGGAACAAGTCGAGCTAAGCAAAAGGCTGAGGCGTTGATTGAGCTTCTAAGGCAACCAAGATCCATTAGTAATGGTGGTGCTAGATCATCGTCCCAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

355

Amino Acids

38.28

Weight (kDa)

6.39

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	59 - 242	1.1e-14	ARMC5
ARM_PUB	PF25598	64 - 340	3.7e-18	Plant U-box protein ARM repeat region
Arm	PF00514	95 - 133	7.3e-06	Armadillo/beta-catenin-like repeat
Arm	PF00514	178 - 216	5.1e-06	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01400
fragaria_vesca	FvH4_2g33150 FvH4_2g33150 FvH4_2g33150
malus_domestica	MD08G1084400.v1.1 MD09G1179200.v1.1 MD15G1070600.v1.1
prunus_persica	Prupe.1G423300_v2.0.a1
pyrus_communis	pycom09g14900 pycom15g06630
rosa_chinensis	RchiOBHm_Chr6g0309511
rosa_laevigata	RLG00000010559 RLG00000022764
rosa_multiflora	Rmu_co8377779.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159340
rosa_rugosa	Rorug06G0372500
rosa_samantha	Rh6AG485900 Rh6BG495300 Rh6CG500300 Rh6DG486200
rosa_wichuraiana	Rw6G042320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	772
AccI	GTMKAC	1 cut(s)	623
AccII	CGCG	1 cut(s)	620
AccIII	TCCGGA	1 cut(s)	557
AciI	CCGC	7 cut(s)	19, 46, 449, 597, 695, 713, 944
AclWI	GGATC	6 cut(s)	105, 302, 360, 549, 730, 1020
AcsI	RAATTY	3 cut(s)	50, 119, 175
AcuI	CTGAAG	2 cut(s)	341, 347
AfaI	GTAC	1 cut(s)	635
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	3 cut(s)	391, 466, 704
AluBI	AGCT	6 cut(s)	248, 361, 650, 886, 980, 1009
AluI	AGCT	6 cut(s)	248, 361, 650, 886, 980, 1009
Alw21I	GWGCWC	2 cut(s)	508, 647
Alw26I	GTCTC	3 cut(s)	71, 155, 844
AlwI	GGATC	6 cut(s)	105, 302, 360, 549, 730, 1020
Aor13HI	TCCGGA	1 cut(s)	557
AoxI	GGCC	2 cut(s)	43, 309
ApeKI	GCWGC	2 cut(s)	248, 497
ApoI	RAATTY	3 cut(s)	50, 119, 175
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	3 cut(s)	8, 25, 589
BanI	GGYRCC	1 cut(s)	772
BarI	GAAGNNNNNNTAC	2 cut(s)	921, 953
BauI	CACGAG	1 cut(s)	200
Bbv12I	GWGCWC	2 cut(s)	508, 647
BbvCI	CCTCAGC	1 cut(s)	993
BbvI	GCAGC	2 cut(s)	235, 484
BccI	CCATC	3 cut(s)	554, 703, 856
BceAI	ACGGC	4 cut(s)	129, 310, 642, 656
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	3 cut(s)	71, 155, 844
BfaI	CTAG	4 cut(s)	587, 924, 947, 1047
BfmI	CTRYAG	1 cut(s)	881
BisI	GCNGC	5 cut(s)	46, 249, 449, 498, 695
BlpI	GCTNAGC	2 cut(s)	646, 981
BlsI	GCNGC	5 cut(s)	47, 250, 450, 499, 696
Bme1390I	CCNGG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	774
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	217
Bpu10I	CCTNAGC	1 cut(s)	993
Bpu1102I	GCTNAGC	2 cut(s)	646, 981
BpuMI	CCSGG	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	22, 306
BsaWI	WCCGGW	3 cut(s)	434, 557, 814
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 801, 831
Bse118I	RCCGGY	2 cut(s)	311, 787
Bse8I	GATNNNNATC	1 cut(s)	299
BseAI	TCCGGA	1 cut(s)	557
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	22, 306
BseJI	GATNNNNATC	1 cut(s)	299
BseMII	CTCAG	4 cut(s)	162, 276, 660, 984
BseRI	GAGGAG	6 cut(s)	70, 143, 146, 545, 822, 908
BseXI	GCAGC	2 cut(s)	235, 484
Bsh1236I	CGCG	1 cut(s)	620
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	45, 311
BshNI	GGYRCC	1 cut(s)	772
BshVI	ATCGAT	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	508, 647
BsiSI	CCGG	8 cut(s)	24, 114, 312, 435, 558, 776, 788, 815
BslFI	GGGAC	1 cut(s)	1042
BsmAI	GTCTC	3 cut(s)	71, 155, 844
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	1042
BsnI	GGCC	2 cut(s)	45, 311
Bsp1286I	GDGCHC	2 cut(s)	508, 647
Bsp13I	TCCGGA	1 cut(s)	557
Bsp1720I	GCTNAGC	2 cut(s)	646, 981
BspACI	CCGC	7 cut(s)	19, 46, 449, 597, 695, 713, 944
BspANI	GGCC	2 cut(s)	45, 311
BspCNI	CTCAG	4 cut(s)	163, 277, 659, 985
BspDI	ATCGAT	1 cut(s)	231
BspEI	TCCGGA	1 cut(s)	557
BspFNI	CGCG	1 cut(s)	620
BspLI	GGNNCC	1 cut(s)	774
BspPI	GGATC	6 cut(s)	105, 302, 360, 549, 730, 1020
BspT107I	GGYRCC	1 cut(s)	772
BsrFI	RCCGGY	2 cut(s)	311, 787
BssAI	RCCGGY	2 cut(s)	311, 787
BssECI	CCNNGG	2 cut(s)	22, 306
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	349
BstC8I	GCNNGC	2 cut(s)	246, 963
BstDEI	CTNAG	6 cut(s)	171, 285, 646, 981, 993, 1013
BstFNI	CGCG	1 cut(s)	620
BstHHI	GCGC	1 cut(s)	167
BstMAI	GTCTC	3 cut(s)	71, 155, 844
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 503, 626, 1015
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	881
BstUI	CGCG	1 cut(s)	620
BstV1I	GCAGC	2 cut(s)	235, 484
BstX2I	RGATCY	4 cut(s)	110, 352, 554, 1025
BstYI	RGATCY	4 cut(s)	110, 352, 554, 1025
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	45, 311
BsuTUI	ATCGAT	1 cut(s)	231
BtsI	GCAGTG	2 cut(s)	126, 378
BtsIMutI	CAGTG	2 cut(s)	126, 378
Cac8I	GCNNGC	2 cut(s)	246, 963
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	2 cut(s)	311, 787
Cfr13I	GGNCC	1 cut(s)	43
ClaI	ATCGAT	1 cut(s)	231
CseI	GACGC	2 cut(s)	609, 626
Csp6I	GTAC	1 cut(s)	634
CspCI	CAANNNNNGTGG	2 cut(s)	714, 749
CviAII	CATG	2 cut(s)	40, 730
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	6 cut(s)	171, 285, 646, 981, 993, 1013
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
EciI	GGCGGA	2 cut(s)	612, 728
Eco130I	CCWWGG	1 cut(s)	306
Eco57I	CTGAAG	2 cut(s)	341, 347
EcoRI	GAATTC	2 cut(s)	119, 175
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	2 cut(s)	43, 733
FaiI	YATR	6 cut(s)	41, 254, 372, 689, 731, 909
FaqI	GGGAC	1 cut(s)	1042
FatI	CATG	2 cut(s)	39, 729
FblI	GTMKAC	1 cut(s)	623
Fnu4HI	GCNGC	5 cut(s)	46, 249, 449, 498, 695
Fsp4HI	GCNGC	5 cut(s)	46, 249, 449, 498, 695
FspBI	CTAG	4 cut(s)	587, 924, 947, 1047
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	5 cut(s)	46, 249, 449, 498, 695
HaeIII	GGCC	2 cut(s)	45, 311
HapII	CCGG	8 cut(s)	24, 114, 312, 435, 558, 776, 788, 815
HgaI	GACGC	2 cut(s)	609, 626
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	2 cut(s)	43, 733
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HpaII	CCGG	8 cut(s)	24, 114, 312, 435, 558, 776, 788, 815
HphI	GGTGA	3 cut(s)	8, 25, 589
Hpy166II	GTNNAC	2 cut(s)	580, 624
Hpy188III	TCNNGA	7 cut(s)	212, 365, 388, 550, 558, 587, 681
Hpy8I	GTNNAC	2 cut(s)	580, 624
Hpy99I	CGWCG	4 cut(s)	150, 410, 625, 628
HpyAV	CCTTC	4 cut(s)	593, 607, 797, 923
HpyCH4V	TGCA	2 cut(s)	383, 676
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 503, 626, 1015
HpyF3I	CTNAG	6 cut(s)	171, 285, 646, 981, 993, 1013
Hsp92II	CATG	2 cut(s)	43, 733
HspAI	GCGC	1 cut(s)	165
Kpn2I	TCCGGA	1 cut(s)	557
LmnI	GCTCC	3 cut(s)	516, 560, 932
Lsp1109I	GCAGC	2 cut(s)	235, 484
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	4 cut(s)	587, 924, 947, 1047
MaeIII	GTNAC	2 cut(s)	98, 376
MboII	GAAGA	5 cut(s)	336, 339, 347, 423, 622
MflI	RGATCY	4 cut(s)	110, 352, 554, 1025
MhlI	GDGCHC	2 cut(s)	508, 647
MluCI	AATT	5 cut(s)	50, 119, 175, 684, 704
MluI	ACGCGT	1 cut(s)	618
MlyI	GAGTC	3 cut(s)	71, 428, 766
MroI	TCCGGA	1 cut(s)	557
MseI	TTAA	4 cut(s)	62, 321, 444, 764
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	8 cut(s)	24, 114, 312, 435, 558, 776, 788, 815
MspR9I	CCNGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	620
MwoI	GCNNNNNNNGC	4 cut(s)	54, 503, 626, 1015
NciI	CCSGG	1 cut(s)	24
NlaIII	CATG	2 cut(s)	43, 733
NlaIV	GGNNCC	1 cut(s)	774
NmuCI	GTSAC	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	788
PfeI	GAWTC	7 cut(s)	13, 215, 289, 391, 565, 600, 779
PkrI	GCNGC	5 cut(s)	47, 250, 450, 499, 696
Ple19I	CGATCG	1 cut(s)	231
PleI	GAGTC	3 cut(s)	71, 427, 765
PpsI	GAGTC	3 cut(s)	71, 427, 765
PspN4I	GGNNCC	1 cut(s)	774
PspPI	GGNCC	1 cut(s)	43
PsuI	RGATCY	4 cut(s)	110, 352, 554, 1025
PvuI	CGATCG	1 cut(s)	231
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
RseI	CAYNNNNRTG	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	622
SaqAI	TTAA	4 cut(s)	62, 321, 444, 764
SatI	GCNGC	5 cut(s)	46, 249, 449, 498, 695
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	3 cut(s)	71, 428, 766
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	2 cut(s)	508, 647
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	881
SgrDI	CGTCGACG	1 cut(s)	622
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	5 cut(s)	50, 119, 175, 684, 704
SsiI	CCGC	7 cut(s)	19, 46, 449, 597, 695, 713, 944
SspMI	CTAG	4 cut(s)	587, 924, 947, 1047
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	306
TaqI	TCGA	8 cut(s)	227, 231, 422, 528, 623, 782, 872, 976
TasI	AATT	5 cut(s)	50, 119, 175, 684, 704
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	3 cut(s)	48, 451, 697
TfiI	GAWTC	7 cut(s)	13, 215, 289, 391, 565, 600, 779
Tru1I	TTAA	4 cut(s)	62, 321, 444, 764
Tru9I	TTAA	4 cut(s)	62, 321, 444, 764
TscAI	CASTG	2 cut(s)	133, 385
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	248, 497
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	1 cut(s)	704
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	2 cut(s)	133, 385
XapI	RAATTY	3 cut(s)	50, 119, 175
XbaI	TCTAGA	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	623
XspI	CTAG	4 cut(s)	587, 924, 947, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.