FvH4_2g33150

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010161
Physical Location & Seq
Forward (+)
24920960 .. 24922924
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33150.t3

Sequence Viewer

Length: 1044 bp
ATGGAGAATGAGGAGCCAACGAATTTCAGTTACATGGGGCGGAATTTCAGTGATCTCAGTATCGACAACAGTTCCTCAGCTTTCAGTGACTGCAACAGTGACAGATCCGGCGAGTTCCAAACGGCGTCGTCTCAGAGCCGGCGGTTTTTAATCGCATGCGCTTCGGATAACTCCGACGATCTGATTCGTCAGCTGGTCGGCGTCCTCGAGTCCGGTTCGATTGAGGAGCAGAAGCAAGCGGCGATGGAGATCAGGCTCCTCGCGAAAAACACATCGGAAAACCGTCTCAAAATCGCGAAATCCGGAGCGATTCGGCCGTTGATTTCACTCTTGTCCTCCTCCGATCTCCAGCTCCAGGAGTACGGCGTCACGGCGATTCTCAACCTCTCGCTCTGCGACGAGAACAAGGAGCTCATAGCGTCGTCCGGAGCGATCAAGCCTCTGGTGCGCGCGCTCAAGACGGGAACTCCGACGGCGAAAGAGAACGCCGCGTGCGCTCTGCTCCGTCTGTCTCAAATGGAAGAGAACAAAGTCGCAATCGGACGGTCCGGAGCGCTCCCGCTGCTGGTGAATCTTCTAGAGAACGGCGGGATTCGCGGCAAGAAGGACGCGTCGACGGCGTTGTACTCGCTCTGCTCGGTGAAAGAGAACAAAATCAGAGCCGTCCAGGCCGGAATCATGAAGCCGTTGGTGGAATTGATGGCGGATTTCGCGTCAAACATGGTGGACAAGTCGGCGTACGTGCTGAGCGTGCTGGTTTCGGTGCCGGAGGCAAGAACGGCGTTGGTCGAGGAAGGCGGGATTCCGGTGCTGGTGGAGATCGTGGAGGTTGGGTCGCAGAGGCAGAAAGAGATATCGGTAGCGATACTACTGCAGCTCTGCGAGAATAACGCGGTCCACCGTAACCTGGTGGCCCGCGAAGGAGCGATACCTCCCCTGGTGGCTTTGTCTCAGTCCGGCACTAAACGCGCCAAGCAAAAGGCGGAGACATTGACAGAGCTTCTACGGCAACCGAGATCCGGCAACGTCGCTGCACGAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

348

Amino Acids

37.28

Weight (kDa)

6.68

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 58 - 237 2e-13 ARMC5
ARM_PUB PF25598 76 - 327 2.2e-17 Plant U-box protein ARM repeat region
Arm PF00514 92 - 130 4.7e-06 Armadillo/beta-catenin-like repeat
ARM_ARMC5 PF24768 126 - 319 2e-14 ARMC5
Arm PF00514 133 - 171 1.7e-06 Armadillo/beta-catenin-like repeat
Arm PF00514 174 - 213 7.8e-06 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 763
AccI GTMKAC 1 cut(s) 614
AccIII TCCGGA 3 cut(s) 302, 425, 548
AclWI GGATC 2 cut(s) 99, 1011
AcoI YGGCCR 1 cut(s) 314
AcsI RAATTY 2 cut(s) 22, 43
AcyI GRCGYC 3 cut(s) 125, 201, 366
AfaI GTAC 3 cut(s) 362, 626, 740
AfeI AGCGCT 1 cut(s) 555
AfiI CCNNNNNNNGG 4 cut(s) 355, 565, 907, 1019
AflIII ACRYGT 1 cut(s) 609
AjnI CCWGG 4 cut(s) 354, 666, 906, 936
AleI CACNNNNGTG 1 cut(s) 1039
AluBI AGCT 6 cut(s) 80, 193, 352, 412, 877, 1000
AluI AGCT 6 cut(s) 80, 193, 352, 412, 877, 1000
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 5 cut(s) 135, 290, 516, 954, 980
AlwI GGATC 2 cut(s) 99, 1011
AlwNI CAGNNNCTG 1 cut(s) 90
Ama87I CYCGRG 1 cut(s) 206
Aor13HI TCCGGA 3 cut(s) 302, 425, 548
Aor51HI AGCGCT 1 cut(s) 555
AoxI GGCC 3 cut(s) 314, 669, 912
ApeKI GCWGC 3 cut(s) 562, 874, 1031
ApoI RAATTY 2 cut(s) 22, 43
AspLEI GCGC 7 cut(s) 161, 450, 452, 454, 497, 556, 971
AspS9I GGNCC 3 cut(s) 546, 895, 913
AsuHPI GGTGA 2 cut(s) 580, 652
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 2 cut(s) 546, 895
BanI GGYRCC 1 cut(s) 763
BanII GRGCYC 1 cut(s) 414
BarI GAAGNNNNNNTAC 2 cut(s) 912, 944
BauI CACGAG 1 cut(s) 1035
Bbv12I GWGCWC 1 cut(s) 414
BbvCI CCTCAGC 1 cut(s) 76
BbvI GCAGC 3 cut(s) 549, 886, 1018
BccI CCATC 2 cut(s) 238, 694
BcgI CGANNNNNNTGC 4 cut(s) 144, 178, 853, 887
BciT130I CCWGG 4 cut(s) 356, 668, 908, 938
BcoDI GTCTC 5 cut(s) 135, 290, 516, 954, 980
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 1 cut(s) 872
BfoI RGCGCY 1 cut(s) 557
BglI GCCNNNNNGGC 1 cut(s) 668
BisI GCNGC 6 cut(s) 240, 489, 563, 598, 875, 1032
BlpI GCTNAGC 1 cut(s) 746
BlsI GCNGC 6 cut(s) 241, 490, 564, 599, 876, 1033
Bme1390I CCNGG 4 cut(s) 356, 668, 908, 938
Bme18I GGWCC 2 cut(s) 546, 895
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 3 cut(s) 546, 895, 913
BmiI GGNNCC 3 cut(s) 15, 257, 765
BmrFI CCNGG 4 cut(s) 356, 668, 908, 938
BpmI CTGGAG 2 cut(s) 332, 338
Bpu10I CCTNAGC 1 cut(s) 76
Bpu1102I GCTNAGC 1 cut(s) 746
BpuEI CTTGAG 1 cut(s) 440
BsaAI YACGTR 1 cut(s) 742
BsaBI GATNNNNATC 1 cut(s) 248
BsaHI GRCGYC 3 cut(s) 125, 201, 366
BsaJI CCNNGG 1 cut(s) 936
BsaWI WCCGGW 5 cut(s) 212, 302, 425, 548, 805
BsaXI ACNNNNNCTCC 4 cut(s) 451, 481, 818, 848
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 565, 907, 1019
Bse118I RCCGGY 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 248
BseAI TCCGGA 3 cut(s) 302, 425, 548
BseBI CCWGG 4 cut(s) 356, 668, 908, 938
BseDI CCNNGG 1 cut(s) 936
BseJI GATNNNNATC 1 cut(s) 248
BseLI CCNNNNNNNGG 4 cut(s) 355, 565, 907, 1019
BseMII CTCAG 5 cut(s) 70, 90, 146, 737, 965
BsePI GCGCGC 2 cut(s) 448, 450
BseRI GAGGAG 4 cut(s) 26, 239, 248, 328
BseX3I CGGCCG 1 cut(s) 314
BseXI GCAGC 3 cut(s) 549, 886, 1018
BsgI GTGCAG 1 cut(s) 1017
Bsh1285I CGRYCG 1 cut(s) 317
BshFI GGCC 3 cut(s) 316, 671, 914
BshNI GGYRCC 1 cut(s) 763
BsiEI CGRYCG 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 206
BsiWI CGTACG 1 cut(s) 738
BslI CCNNNNNNNGG 4 cut(s) 355, 565, 907, 1019
BsmAI GTCTC 5 cut(s) 135, 290, 516, 954, 980
BsmBI CGTCTC 2 cut(s) 135, 290
BsnI GGCC 3 cut(s) 316, 671, 914
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 414
Bsp13I TCCGGA 3 cut(s) 302, 425, 548
Bsp143I GATC 8 cut(s) 52, 104, 178, 249, 343, 432, 819, 1016
Bsp1720I GCTNAGC 1 cut(s) 746
Bsp68I TCGCGA 2 cut(s) 263, 296
BspANI GGCC 3 cut(s) 316, 671, 914
BspCNI CTCAG 5 cut(s) 69, 89, 145, 738, 964
BspEI TCCGGA 3 cut(s) 302, 425, 548
BspHI TCATGA 1 cut(s) 678
BspLI GGNNCC 3 cut(s) 15, 257, 765
BspMAI CTGCAG 1 cut(s) 876
BspPI GGATC 2 cut(s) 99, 1011
BspT107I GGYRCC 1 cut(s) 763
BsrFI RCCGGY 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 936
BssHII GCGCGC 2 cut(s) 448, 450
BssMI GATC 8 cut(s) 52, 104, 178, 249, 343, 432, 819, 1016
BssNI GRCGYC 3 cut(s) 125, 201, 366
BssSI CACGAG 1 cut(s) 1035
Bst2BI CACGAG 1 cut(s) 1035
Bst2UI CCWGG 4 cut(s) 356, 668, 908, 938
Bst4CI ACNGT 5 cut(s) 71, 98, 284, 546, 902
Bst6I CTCTTC 1 cut(s) 516
BstACI GRCGYC 3 cut(s) 125, 201, 366
BstBAI YACGTR 1 cut(s) 742
BstC8I GCNNGC 8 cut(s) 140, 157, 237, 450, 452, 493, 752, 916
BstDEI CTNAG 5 cut(s) 56, 76, 132, 746, 951
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 7 cut(s) 161, 450, 452, 454, 497, 556, 971
BstKTI GATC 8 cut(s) 55, 107, 181, 252, 346, 435, 822, 1019
BstMAI GTCTC 5 cut(s) 135, 290, 516, 954, 980
BstMBI GATC 8 cut(s) 52, 104, 178, 249, 343, 432, 819, 1016
BstMCI CGRYCG 1 cut(s) 317
BstNI CCWGG 4 cut(s) 356, 668, 908, 938
BstNSI RCATGY 1 cut(s) 159
BstSCI CCNGG 4 cut(s) 354, 666, 906, 936
BstSFI CTRYAG 1 cut(s) 872
BstV1I GCAGC 3 cut(s) 549, 886, 1018
BstX2I RGATCY 2 cut(s) 104, 1016
BstYI RGATCY 2 cut(s) 104, 1016
BstZI CGGCCG 1 cut(s) 314
BsuRI GGCC 3 cut(s) 316, 671, 914
BtgZI GCGATG 1 cut(s) 257
BtsIMutI CAGTG 3 cut(s) 55, 91, 103
BtuMI TCGCGA 2 cut(s) 263, 296
Cac8I GCNNGC 8 cut(s) 140, 157, 237, 450, 452, 493, 752, 916
CaiI CAGNNNCTG 1 cut(s) 90
CciI TCATGA 1 cut(s) 678
CfoI GCGC 7 cut(s) 161, 450, 452, 454, 497, 556, 971
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 3 cut(s) 546, 895, 913
CpoI CGGWCCG 1 cut(s) 546
CseI GACGC 7 cut(s) 114, 190, 355, 408, 600, 617, 702
CsiI ACCWGGT 1 cut(s) 906
Csp6I GTAC 3 cut(s) 361, 625, 739
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CspI CGGWCCG 1 cut(s) 546
CviAII CATG 4 cut(s) 34, 156, 679, 721
CviQI GTAC 3 cut(s) 361, 625, 739
DdeI CTNAG 5 cut(s) 56, 76, 132, 746, 951
DpnI GATC 8 cut(s) 54, 106, 180, 251, 345, 434, 821, 1018
DpnII GATC 8 cut(s) 52, 104, 178, 249, 343, 432, 819, 1016
EaeI YGGCCR 1 cut(s) 314
EagI CGGCCG 1 cut(s) 314
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
EciI GGCGGA 3 cut(s) 55, 719, 998
Ecl136II GAGCTC 1 cut(s) 412
EclXI CGGCCG 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 414
Eco32I GATATC 1 cut(s) 855
Eco47I GGWCC 2 cut(s) 546, 895
Eco47III AGCGCT 1 cut(s) 555
Eco52I CGGCCG 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 412
EcoRII CCWGG 4 cut(s) 354, 666, 906, 936
EcoRV GATATC 1 cut(s) 855
EcoT38I GRGCYC 1 cut(s) 414
Esp3I CGTCTC 2 cut(s) 135, 290
FaeI CATG 4 cut(s) 37, 159, 682, 724
FaiI YATR 5 cut(s) 35, 157, 416, 680, 722
FatI CATG 4 cut(s) 33, 155, 678, 720
FauI CCCGC 4 cut(s) 567, 581, 791, 923
FblI GTMKAC 1 cut(s) 614
Fnu4HI GCNGC 6 cut(s) 240, 489, 563, 598, 875, 1032
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 6 cut(s) 240, 489, 563, 598, 875, 1032
FspBI CTAG 1 cut(s) 578
GlaI GCGC 7 cut(s) 160, 449, 451, 453, 496, 555, 970
GluI GCNGC 6 cut(s) 240, 489, 563, 598, 875, 1032
GsuI CTGGAG 2 cut(s) 332, 338
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 3 cut(s) 316, 671, 914
HgaI GACGC 7 cut(s) 114, 190, 355, 408, 600, 617, 702
HhaI GCGC 7 cut(s) 161, 450, 452, 454, 497, 556, 971
Hin1I GRCGYC 3 cut(s) 125, 201, 366
Hin1II CATG 4 cut(s) 37, 159, 682, 724
Hin6I GCGC 7 cut(s) 159, 448, 450, 452, 495, 554, 969
HinP1I GCGC 7 cut(s) 159, 448, 450, 452, 495, 554, 969
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 8 cut(s) 184, 209, 310, 376, 571, 592, 675, 802
HphI GGTGA 2 cut(s) 580, 652
Hpy166II GTNNAC 3 cut(s) 615, 727, 898
Hpy188I TCNGA 9 cut(s) 135, 166, 175, 183, 277, 343, 471, 542, 659
Hpy188III TCNNGA 8 cut(s) 262, 295, 303, 426, 457, 549, 578, 679
Hpy8I GTNNAC 3 cut(s) 615, 727, 898
Hpy99I CGWCG 8 cut(s) 130, 179, 401, 424, 475, 616, 619, 1031
HpyAV CCTTC 3 cut(s) 598, 788, 914
HpyCH4III ACNGT 5 cut(s) 71, 98, 284, 546, 902
HpyCH4IV ACGT 2 cut(s) 741, 1026
HpyCH4V TGCA 3 cut(s) 93, 874, 1034
HpyF3I CTNAG 5 cut(s) 56, 76, 132, 746, 951
HpySE526I ACGT 2 cut(s) 741, 1026
Hsp92I GRCGYC 3 cut(s) 125, 201, 366
Hsp92II CATG 4 cut(s) 37, 159, 682, 724
HspAI GCGC 7 cut(s) 159, 448, 450, 452, 495, 554, 969
Kpn2I TCCGGA 3 cut(s) 302, 425, 548
KroI GCCGGC 1 cut(s) 138
KroNI GCCGGC 1 cut(s) 140
Kzo9I GATC 8 cut(s) 52, 104, 178, 249, 343, 432, 819, 1016
Lsp1109I GCAGC 3 cut(s) 549, 886, 1018
MabI ACCWGGT 1 cut(s) 906
MaeI CTAG 1 cut(s) 578
MaeII ACGT 2 cut(s) 741, 1026
MaeIII GTNAC 5 cut(s) 29, 86, 98, 367, 902
MalI GATC 8 cut(s) 54, 106, 180, 251, 345, 434, 821, 1018
MboI GATC 8 cut(s) 52, 104, 178, 249, 343, 432, 819, 1016
MboII GAAGA 2 cut(s) 533, 566
MflI RGATCY 2 cut(s) 104, 1016
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 3 cut(s) 22, 43, 695
MluI ACGCGT 1 cut(s) 609
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 2 cut(s) 198, 494
MroI TCCGGA 3 cut(s) 302, 425, 548
MroNI GCCGGC 1 cut(s) 138
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 1039
MspA1I CMGCKG 2 cut(s) 193, 562
MspR9I CCNGG 4 cut(s) 356, 668, 908, 938
MvaI CCWGG 4 cut(s) 356, 668, 908, 938
NaeI GCCGGC 1 cut(s) 140
NdeII GATC 8 cut(s) 52, 104, 178, 249, 343, 432, 819, 1016
NgoMIV GCCGGC 1 cut(s) 138
NlaIII CATG 4 cut(s) 37, 159, 682, 724
NlaIV GGNNCC 3 cut(s) 15, 257, 765
NmuCI GTSAC 3 cut(s) 86, 98, 367
NruI TCGCGA 2 cut(s) 263, 296
NspI RCATGY 1 cut(s) 159
OliI CACNNNNGTG 1 cut(s) 1039
PaeI GCATGC 1 cut(s) 159
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 678
PauI GCGCGC 2 cut(s) 448, 450
PcsI WCGNNNNNNNCGW 4 cut(s) 204, 428, 467, 747
PdiI GCCGGC 1 cut(s) 140
PfeI GAWTC 7 cut(s) 184, 310, 376, 571, 592, 675, 802
Pfl23II CGTACG 1 cut(s) 738
PfoI TCCNGGA 1 cut(s) 354
PkrI GCNGC 6 cut(s) 241, 490, 564, 599, 876, 1033
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 742
Psp124BI GAGCTC 1 cut(s) 414
Psp6I CCWGG 4 cut(s) 354, 666, 906, 936
PspGI CCWGG 4 cut(s) 354, 666, 906, 936
PspLI CGTACG 1 cut(s) 738
PspN4I GGNNCC 3 cut(s) 15, 257, 765
PspPI GGNCC 3 cut(s) 546, 895, 913
PspXI VCTCGAGB 1 cut(s) 206
PstI CTGCAG 1 cut(s) 876
PstNI CAGNNNCTG 1 cut(s) 90
PsuI RGATCY 2 cut(s) 104, 1016
PteI GCGCGC 2 cut(s) 448, 450
PvuII CAGCTG 1 cut(s) 193
RruI TCGCGA 2 cut(s) 263, 296
RsaI GTAC 3 cut(s) 362, 626, 740
RsaNI GTAC 3 cut(s) 361, 625, 739
RseI CAYNNNNRTG 1 cut(s) 1039
Rsr2I CGGWCCG 1 cut(s) 546
RsrII CGGWCCG 1 cut(s) 546
SacI GAGCTC 1 cut(s) 414
SalI GTCGAC 1 cut(s) 613
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 6 cut(s) 240, 489, 563, 598, 875, 1032
Sau3AI GATC 8 cut(s) 52, 104, 178, 249, 343, 432, 819, 1016
Sau96I GGNCC 3 cut(s) 546, 895, 913
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 4 cut(s) 356, 668, 908, 938
SduI GDGCHC 1 cut(s) 414
SexAI ACCWGGT 1 cut(s) 906
SfcI CTRYAG 1 cut(s) 872
Sfr274I CTCGAG 1 cut(s) 206
SgrDI CGTCGACG 1 cut(s) 613
SinI GGWCC 2 cut(s) 546, 895
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 1039
SmlI CTYRAG 2 cut(s) 206, 455
SmoI CTYRAG 2 cut(s) 206, 455
SphI GCATGC 1 cut(s) 159
Sse9I AATT 3 cut(s) 22, 43, 695
SspMI CTAG 1 cut(s) 578
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 4 cut(s) 354, 666, 906, 936
TaaI ACNGT 5 cut(s) 71, 98, 284, 546, 902
TaiI ACGT 2 cut(s) 744, 1029
TaqI TCGA 5 cut(s) 63, 207, 218, 614, 789
TasI AATT 3 cut(s) 22, 43, 695
TatI WGTACW 1 cut(s) 624
TauI GCSGC 3 cut(s) 242, 491, 600
TfiI GAWTC 7 cut(s) 184, 310, 376, 571, 592, 675, 802
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 3 cut(s) 55, 91, 103
TseFI GTSAC 3 cut(s) 86, 98, 367
TseI GCWGC 3 cut(s) 562, 874, 1031
Tsp45I GTSAC 3 cut(s) 86, 98, 367
TspDTI ATGAA 1 cut(s) 695
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 3 cut(s) 55, 91, 103
VpaK11BI GGWCC 2 cut(s) 546, 895
XapI RAATTY 2 cut(s) 22, 43
XbaI TCTAGA 1 cut(s) 577
XceI RCATGY 1 cut(s) 159
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 614
XspI CTAG 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.