Prupe.1G423300_v2.0.a1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010161
Physical Location & Seq
Forward (+)
36502611 .. 36504739
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G423300.1

Sequence Viewer

Length: 1059 bp
ATGGAGACGGAAAATCCGCCGGATTTCAGTTACCTTGGAAGGAATTTCAGTGATCTGAGTAACGGCGAACACTCCTCTGCTTTCAGTGATTGTAACAGCGACAGATCCGGAGAGTTTCAAACGGCGTCGTCTCAGAGCCGTCGGCTTCTGATTTCTTGCACTTCGGACAACTCCGACGATCTGATTAGCCAGCTCATCGCCGACCTCGAGGCCGGTTCGATTGAGGAGCAGAAGCAGGCGGCCATGGAGATCAGGCTCCTCGCCAAGAACAAGTCCGAAAACCGGCTCAAAATCGCCAAAGCAGGCGCGATTAAGCCGTTGGTTTCGCTCTTATCGTGTTCCGATCTCCAGCTACAAGAGTACGGCGTCACGGCGATTCTGAACCTTTCGCTCTGCGACGAGAACAAGGAGCTCATAGCTTCGTCCGGAGCAATCAAGCCTTTGGTACGATCGCTCAAGACAGGAACGCCGACGGCCAAAGAGAACGCAGCTTGCGCTCTGCTCCGCCTATCGCAAATCGAAGAAAACAAAGTCGCAATTGGACGGTCAGGAGCGATTCCGCAGCTGGTAAATCTTCTCGAGAGCGGAGGTTTTCGCGGGAAGAAGGACGCCTCGACGGCTCTGTACTCGCTGTGCTCCGTGAAGGAGAATAAGATCAGAGCCGTCCAATCGGGAATCATGAAGCCGTTGGTGGAATTGATGGCGGATTTCGGGTCGAACATGGTGGACAAATCAGCGTACGTCCTGAGCGTTCTCGTTTCGGTGCCGGAGGCTCGTGCGGCGTTGGTCGAAGAAGGAGGAATTCCGGTGCTGGTGGAGATTATAGAGGTCGGGTCGCAGAGGCAGAAGGAGATTTCGGTGGCGATATTGCTTCAGATTTGCGAGAACAGTGCAGTGCACCGTAATATGGTGGCCCGCGAAGGAGCGATTCCTCCCCTTGTGGCCTTGTCACAGTCCGGCACTAATCGCGCCAAGCAAAAGGCGGAGACATTGACAGAGCTTCTACGGCAACCGAGATCCGGCAACGTCGCTGCACGAGCGTCAGACGTGTCATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

353

Amino Acids

37.68

Weight (kDa)

5.71

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1057
AbsI CCTCGAGG 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 763
AccBSI CCGCTC 1 cut(s) 585
AccII CGCG 4 cut(s) 308, 597, 918, 969
AccIII TCCGGA 2 cut(s) 107, 425
AclWI GGATC 2 cut(s) 99, 1011
AcoI YGGCCR 2 cut(s) 240, 474
AcsI RAATTY 2 cut(s) 43, 801
AcuI CTGAAG 1 cut(s) 857
AcyI GRCGYC 3 cut(s) 125, 366, 609
AfaI GTAC 4 cut(s) 362, 447, 626, 740
AfiI CCNNNNNNNGG 3 cut(s) 282, 907, 1019
AflIII ACRYGT 1 cut(s) 1047
AgsI TTSAA 1 cut(s) 119
AjiI CACGTC 1 cut(s) 1048
AluBI AGCT 7 cut(s) 193, 352, 412, 419, 491, 565, 1000
AluI AGCT 7 cut(s) 193, 352, 412, 419, 491, 565, 1000
Alw21I GWGCWC 3 cut(s) 414, 638, 900
Alw26I GTCTC 2 cut(s) 135, 980
Alw44I GTGCAC 1 cut(s) 896
AlwI GGATC 2 cut(s) 99, 1011
Ama87I CYCGRG 2 cut(s) 206, 578
Aor13HI TCCGGA 2 cut(s) 107, 425
AoxI GGCC 5 cut(s) 210, 240, 474, 912, 942
ApaLI GTGCAC 1 cut(s) 896
ApeKI GCWGC 3 cut(s) 488, 562, 1031
ApoI RAATTY 2 cut(s) 43, 801
AspLEI GCGC 3 cut(s) 308, 497, 971
AspS9I GGNCC 1 cut(s) 913
AvaI CYCGRG 2 cut(s) 206, 578
BaeGI GKGCMC 1 cut(s) 900
BanI GGYRCC 1 cut(s) 763
BanII GRGCYC 1 cut(s) 414
BauI CACGAG 2 cut(s) 774, 1035
Bbv12I GWGCWC 3 cut(s) 414, 638, 900
BbvI GCAGC 3 cut(s) 500, 574, 1018
BccI CCATC 1 cut(s) 694
BcgI CGANNNNNNTGC 2 cut(s) 872, 906
BcoDI GTCTC 2 cut(s) 135, 980
BglI GCCNNNNNGGC 1 cut(s) 617
BisI GCNGC 5 cut(s) 240, 489, 563, 780, 1032
BlsI GCNGC 5 cut(s) 241, 490, 564, 781, 1033
BmeT110I CYCGRG 2 cut(s) 206, 578
BmgBI CACGTC 1 cut(s) 1048
BmgT120I GGNCC 1 cut(s) 913
BmiI GGNNCC 2 cut(s) 257, 765
BpmI CTGGAG 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 746
BpuEI CTTGAG 1 cut(s) 440
BsaHI GRCGYC 3 cut(s) 125, 366, 609
BsaJI CCNNGG 2 cut(s) 34, 243
BsaWI WCCGGW 3 cut(s) 107, 425, 805
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 907, 1019
Bse118I RCCGGY 2 cut(s) 212, 282
BseAI TCCGGA 2 cut(s) 107, 425
BseDI CCNNGG 2 cut(s) 34, 243
BseLI CCNNNNNNNGG 3 cut(s) 282, 907, 1019
BseMII CTCAG 3 cut(s) 47, 146, 737
BseRI GAGGAG 3 cut(s) 64, 239, 248
BseSI GKGCMC 1 cut(s) 900
BseXI GCAGC 3 cut(s) 500, 574, 1018
BsgI GTGCAG 2 cut(s) 912, 1017
Bsh1236I CGCG 4 cut(s) 308, 597, 918, 969
Bsh1285I CGRYCG 1 cut(s) 452
BshFI GGCC 5 cut(s) 212, 242, 476, 914, 944
BshNI GGYRCC 1 cut(s) 763
BsiEI CGRYCG 1 cut(s) 452
BsiHKAI GWGCWC 3 cut(s) 414, 638, 900
BsiHKCI CYCGRG 2 cut(s) 206, 578
BsiSI CCGG 9 cut(s) 20, 108, 213, 283, 426, 767, 806, 957, 1020
BsiWI CGTACG 1 cut(s) 738
BslI CCNNNNNNNGG 3 cut(s) 282, 907, 1019
BsmAI GTCTC 2 cut(s) 135, 980
BsmBI CGTCTC 1 cut(s) 135
BsnI GGCC 5 cut(s) 212, 242, 476, 914, 944
BsoBI CYCGRG 2 cut(s) 206, 578
Bsp1286I GDGCHC 3 cut(s) 414, 638, 900
Bsp13I TCCGGA 2 cut(s) 107, 425
Bsp143I GATC 8 cut(s) 52, 104, 178, 249, 343, 449, 654, 1016
Bsp19I CCATGG 1 cut(s) 243
BspANI GGCC 5 cut(s) 212, 242, 476, 914, 944
BspCNI CTCAG 3 cut(s) 48, 145, 738
BspEI TCCGGA 2 cut(s) 107, 425
BspFNI CGCG 4 cut(s) 308, 597, 918, 969
BspHI TCATGA 1 cut(s) 678
BspLI GGNNCC 2 cut(s) 257, 765
BspPI GGATC 2 cut(s) 99, 1011
BspT107I GGYRCC 1 cut(s) 763
BsrBI CCGCTC 1 cut(s) 585
BsrFI RCCGGY 2 cut(s) 212, 282
BssAI RCCGGY 2 cut(s) 212, 282
BssECI CCNNGG 2 cut(s) 34, 243
BssMI GATC 8 cut(s) 52, 104, 178, 249, 343, 449, 654, 1016
BssNI GRCGYC 3 cut(s) 125, 366, 609
BssSI CACGAG 2 cut(s) 774, 1035
BssT1I CCWWGG 2 cut(s) 34, 243
Bst2BI CACGAG 2 cut(s) 774, 1035
Bst4CI ACNGT 4 cut(s) 546, 890, 902, 954
BstACI GRCGYC 3 cut(s) 125, 366, 609
BstC8I GCNNGC 5 cut(s) 191, 237, 304, 493, 916
BstDEI CTNAG 3 cut(s) 56, 132, 746
BstDSI CCRYGG 1 cut(s) 243
BstFNI CGCG 4 cut(s) 308, 597, 918, 969
BstHHI GCGC 3 cut(s) 308, 497, 971
BstKTI GATC 8 cut(s) 55, 107, 181, 252, 346, 452, 657, 1019
BstMAI GTCTC 2 cut(s) 135, 980
BstMBI GATC 8 cut(s) 52, 104, 178, 249, 343, 449, 654, 1016
BstMCI CGRYCG 1 cut(s) 452
BstMWI GCNNNNNNNGC 6 cut(s) 494, 617, 779, 966, 1006, 1037
BstSLI GKGCMC 1 cut(s) 900
BstUI CGCG 4 cut(s) 308, 597, 918, 969
BstV1I GCAGC 3 cut(s) 500, 574, 1018
BstX2I RGATCY 2 cut(s) 104, 1016
BstYI RGATCY 2 cut(s) 104, 1016
BsuRI GGCC 5 cut(s) 212, 242, 476, 914, 944
BtgI CCRYGG 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 181
BtrI CACGTC 1 cut(s) 1048
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 4 cut(s) 55, 91, 895, 900
Cac8I GCNNGC 5 cut(s) 191, 237, 304, 493, 916
CciI TCATGA 1 cut(s) 678
CfoI GCGC 3 cut(s) 308, 497, 971
Cfr10I RCCGGY 2 cut(s) 212, 282
Cfr13I GGNCC 1 cut(s) 913
CseI GACGC 4 cut(s) 114, 355, 617, 1029
Csp6I GTAC 4 cut(s) 361, 446, 625, 739
CviAII CATG 3 cut(s) 244, 679, 721
CviQI GTAC 4 cut(s) 361, 446, 625, 739
DdeI CTNAG 3 cut(s) 56, 132, 746
DpnI GATC 8 cut(s) 54, 106, 180, 251, 345, 451, 656, 1018
DpnII GATC 8 cut(s) 52, 104, 178, 249, 343, 449, 654, 1016
EaeI YGGCCR 2 cut(s) 240, 474
EciI GGCGGA 4 cut(s) 6, 494, 719, 998
Ecl136II GAGCTC 1 cut(s) 412
Eco130I CCWWGG 2 cut(s) 34, 243
Eco24I GRGCYC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 857
Eco88I CYCGRG 2 cut(s) 206, 578
EcoICRI GAGCTC 1 cut(s) 412
EcoRI GAATTC 1 cut(s) 801
EcoT14I CCWWGG 2 cut(s) 34, 243
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 2 cut(s) 34, 243
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 3 cut(s) 247, 682, 724
FaiI YATR 7 cut(s) 245, 416, 680, 722, 824, 908, 1057
FatI CATG 3 cut(s) 243, 678, 720
FauI CCCGC 2 cut(s) 590, 923
Fnu4HI GCNGC 5 cut(s) 240, 489, 563, 780, 1032
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 5 cut(s) 240, 489, 563, 780, 1032
GlaI GCGC 3 cut(s) 307, 496, 970
GluI GCNGC 5 cut(s) 240, 489, 563, 780, 1032
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 5 cut(s) 212, 242, 476, 914, 944
HapII CCGG 9 cut(s) 20, 108, 213, 283, 426, 767, 806, 957, 1020
HgaI GACGC 4 cut(s) 114, 355, 617, 1029
HhaI GCGC 3 cut(s) 308, 497, 971
Hin1I GRCGYC 3 cut(s) 125, 366, 609
Hin1II CATG 3 cut(s) 247, 682, 724
Hin6I GCGC 3 cut(s) 306, 495, 969
HinP1I GCGC 3 cut(s) 306, 495, 969
HinfI GANTC 4 cut(s) 376, 556, 675, 928
HpaII CCGG 9 cut(s) 20, 108, 213, 283, 426, 767, 806, 957, 1020
Hpy166II GTNNAC 2 cut(s) 727, 898
Hpy188III TCNNGA 9 cut(s) 108, 426, 457, 549, 578, 580, 672, 679, 745
Hpy8I GTNNAC 2 cut(s) 727, 898
Hpy99I CGWCG 7 cut(s) 130, 144, 179, 401, 475, 619, 1031
HpyAV CCTTC 6 cut(s) 33, 598, 637, 788, 841, 914
HpyCH4III ACNGT 4 cut(s) 546, 890, 902, 954
HpyCH4IV ACGT 3 cut(s) 741, 1026, 1047
HpyCH4V TGCA 4 cut(s) 159, 893, 898, 1034
HpyF10VI GCNNNNNNNGC 6 cut(s) 494, 617, 779, 966, 1006, 1037
HpyF3I CTNAG 3 cut(s) 56, 132, 746
HpySE526I ACGT 3 cut(s) 741, 1026, 1047
Hsp92I GRCGYC 3 cut(s) 125, 366, 609
Hsp92II CATG 3 cut(s) 247, 682, 724
HspAI GCGC 3 cut(s) 306, 495, 969
Kpn2I TCCGGA 2 cut(s) 107, 425
Kzo9I GATC 8 cut(s) 52, 104, 178, 249, 343, 449, 654, 1016
LmnI GCTCC 8 cut(s) 226, 261, 409, 428, 507, 551, 641, 923
Lsp1109I GCAGC 3 cut(s) 500, 574, 1018
MaeII ACGT 3 cut(s) 741, 1026, 1047
MaeIII GTNAC 5 cut(s) 29, 59, 92, 367, 948
MalI GATC 8 cut(s) 54, 106, 180, 251, 345, 451, 656, 1018
MbiI CCGCTC 1 cut(s) 585
MboI GATC 8 cut(s) 52, 104, 178, 249, 343, 449, 654, 1016
MboII GAAGA 4 cut(s) 533, 566, 613, 803
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 104, 1016
MhlI GDGCHC 3 cut(s) 414, 638, 900
MluCI AATT 4 cut(s) 43, 537, 695, 801
MmeI TCCRAC 1 cut(s) 198
MroI TCCGGA 2 cut(s) 107, 425
MseI TTAA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 565
MspI CCGG 9 cut(s) 20, 108, 213, 283, 426, 767, 806, 957, 1020
MunI CAATTG 1 cut(s) 537
MvnI CGCG 4 cut(s) 308, 597, 918, 969
MwoI GCNNNNNNNGC 6 cut(s) 494, 617, 779, 966, 1006, 1037
NcoI CCATGG 1 cut(s) 243
NdeII GATC 8 cut(s) 52, 104, 178, 249, 343, 449, 654, 1016
NlaIII CATG 3 cut(s) 247, 682, 724
NlaIV GGNNCC 2 cut(s) 257, 765
NmuCI GTSAC 2 cut(s) 367, 948
PaeR7I CTCGAG 2 cut(s) 206, 578
PagI TCATGA 1 cut(s) 678
PcsI WCGNNNNNNNCGW 3 cut(s) 204, 332, 747
PfeI GAWTC 4 cut(s) 376, 556, 675, 928
Pfl23II CGTACG 1 cut(s) 738
PkrI GCNGC 5 cut(s) 241, 490, 564, 781, 1033
Ple19I CGATCG 1 cut(s) 452
PsiI TTATAA 1 cut(s) 1057
Psp124BI GAGCTC 1 cut(s) 414
PspLI CGTACG 1 cut(s) 738
PspN4I GGNNCC 2 cut(s) 257, 765
PspPI GGNCC 1 cut(s) 913
PspXI VCTCGAGB 1 cut(s) 206
PsuI RGATCY 2 cut(s) 104, 1016
PvuI CGATCG 1 cut(s) 452
PvuII CAGCTG 1 cut(s) 565
RsaI GTAC 4 cut(s) 362, 447, 626, 740
RsaNI GTAC 4 cut(s) 361, 446, 625, 739
SacI GAGCTC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 5 cut(s) 240, 489, 563, 780, 1032
Sau3AI GATC 8 cut(s) 52, 104, 178, 249, 343, 449, 654, 1016
Sau96I GGNCC 1 cut(s) 913
SduI GDGCHC 3 cut(s) 414, 638, 900
Sfr274I CTCGAG 2 cut(s) 206, 578
SlaI CTCGAG 2 cut(s) 206, 578
SmlI CTYRAG 3 cut(s) 206, 455, 578
SmoI CTYRAG 3 cut(s) 206, 455, 578
Sse9I AATT 4 cut(s) 43, 537, 695, 801
SstI GAGCTC 1 cut(s) 414
StyI CCWWGG 2 cut(s) 34, 243
TaaI ACNGT 4 cut(s) 546, 890, 902, 954
TaiI ACGT 3 cut(s) 744, 1029, 1050
TaqI TCGA 7 cut(s) 207, 218, 519, 579, 614, 716, 789
TasI AATT 4 cut(s) 43, 537, 695, 801
TatI WGTACW 1 cut(s) 624
TauI GCSGC 2 cut(s) 242, 782
TfiI GAWTC 4 cut(s) 376, 556, 675, 928
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 4 cut(s) 55, 91, 895, 900
TseFI GTSAC 2 cut(s) 367, 948
TseI GCWGC 3 cut(s) 488, 562, 1031
Tsp45I GTSAC 2 cut(s) 367, 948
TspDTI ATGAA 1 cut(s) 695
TspGWI ACGGA 2 cut(s) 23, 628
TspRI CASTG 4 cut(s) 55, 91, 895, 900
VneI GTGCAC 1 cut(s) 896
XapI RAATTY 2 cut(s) 43, 801
XhoI CTCGAG 2 cut(s) 206, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.