Rroxscaffold_7G00159340

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010161
Physical Location & Seq
Forward (+)
2563133 .. 2565921
2789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159340.1

Sequence Viewer

Length: 1044 bp
ATGGAGAATGAAGACCTATCCAATTTCAGTTACATGGGGCGGAATTTCAGTGATCTCAGTATCGGCGACAGCTCCTCTGCTTTCAGTGACTGCAACAGTGACAGATCCGGCGAGTTCCAAACGGCGTCGTCTCAGAGCCGGCGGCTCCTGATTGCCTGCGCTTCGGACAACTCCGACGATCTGATACGTCAGCTGGTCGGCGTCCTCGAGTCCGGTTCGATTGAAGAGCAGAAGCAAGCGGCGATGGAGATCAGGCTCCTCGCCAAAAACAAATCGGAAAACCGCCTCAAAATCGCGGAATACGGAGCGATACGGCCGTTGATTTCGCTCTTGTCTTCCTCCGATCTCCAGCTCCAGGAGTACGGCGTCACGGCGATTCTGAACCTGTCGCTCTGCGACGAGAACAAGGAGCTCATAGCTTCGTCGGGAGCAATCAAGCCTCTGGTCCGAGCGCTCAAGACGGGAAATCCAACCACGAAAGAGAACGCCGCGTGCGCTCTGCTCCGTCTATCTCAAATAGAAGAAAACAAAGTCGCAATCGGACGGTCGGGAGCGCTTCCGCTGCTGGTGAATCTTCTAGAGAACGGCGGAATTCGCGGCAAGAAGGACGCGTCGACGGCTCTGTATTCTCTATGCTCGGTAAAAGAGAACAAAATCAGAGCCGTTCAGGCCGGGATCATGAAGCCGTTGGTGGAATTGATGGCGGATTTCAGTTCAAACATGGTGGACAAGTCGGCATACGTGCTGAGCGTGCTGGTTTCGGTGCCGGAGGCTCGAACGGCGTTGGTGGAGGAAGGCGGGATTCCGGTGCTGGTGGAAATCGTGGAGGTTGGGTCGCAGAGGCAGAAGGAGATATCGGTGGCGATATTGCTGCAGCTGTGCGAGAATAACGCGGTCCACCGTAACATGGTGGCCCGCGAAGGAGCGCTACCTCCCCTGGTGGCTCTGTCTCAGTCCGGCACTAATCGCGCCAGGCAAAAGGCGGAGACATTGACAGAGCTTCTACGGCAACCGAGATCCGGCAACGTCGCTGCACGAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

347

Amino Acids

37.36

Weight (kDa)

5.79

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 58 - 237 6.4e-14 ARMC5
ARM_PUB PF25598 76 - 336 1e-20 Plant U-box protein ARM repeat region
Arm PF00514 92 - 130 7.5e-06 Armadillo/beta-catenin-like repeat
ARM_ARMC5 PF24768 128 - 321 1.6e-15 ARMC5
Arm PF00514 133 - 171 1.6e-08 Armadillo/beta-catenin-like repeat
Arm PF00514 175 - 213 8.3e-06 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 763
AccI GTMKAC 1 cut(s) 614
AccII CGCG 7 cut(s) 296, 491, 597, 611, 893, 918, 969
AclWI GGATC 3 cut(s) 99, 683, 1011
AcoI YGGCCR 1 cut(s) 314
AcsI RAATTY 2 cut(s) 43, 591
AcyI GRCGYC 3 cut(s) 125, 201, 366
AfaI GTAC 1 cut(s) 362
AfeI AGCGCT 3 cut(s) 453, 555, 927
AfiI CCNNNNNNNGG 3 cut(s) 355, 907, 1019
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 2 cut(s) 224, 717
AjnI CCWGG 3 cut(s) 354, 936, 971
AleI CACNNNNGTG 1 cut(s) 1039
AluBI AGCT 7 cut(s) 72, 193, 352, 412, 419, 877, 1000
AluI AGCT 7 cut(s) 72, 193, 352, 412, 419, 877, 1000
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 3 cut(s) 135, 954, 980
AlwI GGATC 3 cut(s) 99, 683, 1011
AlwNI CAGNNNCTG 1 cut(s) 90
Ama87I CYCGRG 1 cut(s) 206
Aor51HI AGCGCT 3 cut(s) 453, 555, 927
AoxI GGCC 3 cut(s) 314, 669, 912
ApeKI GCWGC 4 cut(s) 562, 871, 874, 1031
ApoI RAATTY 2 cut(s) 43, 591
AspLEI GCGC 6 cut(s) 161, 454, 497, 556, 928, 971
AspS9I GGNCC 3 cut(s) 445, 895, 913
AsuC2I CCSGG 1 cut(s) 673
AsuHPI GGTGA 1 cut(s) 580
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 2 cut(s) 445, 895
BaeI ACNNNNGTAYC 2 cut(s) 302, 335
BanI GGYRCC 1 cut(s) 763
BanII GRGCYC 1 cut(s) 414
BarI GAAGNNNNNNTAC 2 cut(s) 912, 944
BauI CACGAG 1 cut(s) 1035
BbsI GAAGAC 2 cut(s) 18, 327
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 4 cut(s) 549, 858, 886, 1018
BccI CCATC 2 cut(s) 238, 694
BcgI CGANNNNNNTGC 2 cut(s) 853, 887
BciT130I CCWGG 3 cut(s) 356, 938, 973
BcnI CCSGG 1 cut(s) 673
BcoDI GTCTC 3 cut(s) 135, 954, 980
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 1 cut(s) 872
BfoI RGCGCY 3 cut(s) 455, 557, 929
BglI GCCNNNNNGGC 1 cut(s) 668
BisI GCNGC 8 cut(s) 143, 240, 489, 563, 598, 872, 875, 1032
BlpI GCTNAGC 1 cut(s) 746
BlsI GCNGC 8 cut(s) 144, 241, 490, 564, 599, 873, 876, 1033
Bme1390I CCNGG 4 cut(s) 356, 673, 938, 973
Bme18I GGWCC 2 cut(s) 445, 895
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 3 cut(s) 445, 895, 913
BmiI GGNNCC 3 cut(s) 146, 257, 765
BmrFI CCNGG 4 cut(s) 356, 673, 938, 973
BpiI GAAGAC 2 cut(s) 18, 327
BpmI CTGGAG 2 cut(s) 332, 338
Bpu1102I GCTNAGC 1 cut(s) 746
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 1 cut(s) 673
BsaAI YACGTR 1 cut(s) 742
BsaBI GATNNNNATC 1 cut(s) 248
BsaHI GRCGYC 3 cut(s) 125, 201, 366
BsaJI CCNNGG 1 cut(s) 936
BsaWI WCCGGW 2 cut(s) 212, 805
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 907, 1019
Bse118I RCCGGY 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 248
BseBI CCWGG 3 cut(s) 356, 938, 973
BseDI CCNNGG 1 cut(s) 936
BseJI GATNNNNATC 1 cut(s) 248
BseLI CCNNNNNNNGG 3 cut(s) 355, 907, 1019
BseMII CTCAG 4 cut(s) 70, 146, 737, 965
BseRI GAGGAG 2 cut(s) 64, 248
BseX3I CGGCCG 1 cut(s) 314
BseXI GCAGC 4 cut(s) 549, 858, 886, 1018
BsgI GTGCAG 1 cut(s) 1017
Bsh1236I CGCG 7 cut(s) 296, 491, 597, 611, 893, 918, 969
Bsh1285I CGRYCG 2 cut(s) 317, 548
BshFI GGCC 3 cut(s) 316, 671, 914
BshNI GGYRCC 1 cut(s) 763
BsiEI CGRYCG 2 cut(s) 317, 548
BsiHKAI GWGCWC 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 8 cut(s) 108, 139, 213, 672, 767, 806, 957, 1020
BslI CCNNNNNNNGG 3 cut(s) 355, 907, 1019
BsmAI GTCTC 3 cut(s) 135, 954, 980
BsmBI CGTCTC 1 cut(s) 135
BsnI GGCC 3 cut(s) 316, 671, 914
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 7 cut(s) 52, 104, 178, 249, 343, 675, 1016
Bsp1720I GCTNAGC 1 cut(s) 746
BspANI GGCC 3 cut(s) 316, 671, 914
BspCNI CTCAG 4 cut(s) 69, 145, 738, 964
BspFNI CGCG 7 cut(s) 296, 491, 597, 611, 893, 918, 969
BspHI TCATGA 1 cut(s) 678
BspLI GGNNCC 3 cut(s) 146, 257, 765
BspMAI CTGCAG 1 cut(s) 876
BspPI GGATC 3 cut(s) 99, 683, 1011
BspQI GCTCTTC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 763
BsrFI RCCGGY 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 936
BssMI GATC 7 cut(s) 52, 104, 178, 249, 343, 675, 1016
BssNI GRCGYC 3 cut(s) 125, 201, 366
BssSI CACGAG 1 cut(s) 1035
Bst2BI CACGAG 1 cut(s) 1035
Bst2UI CCWGG 3 cut(s) 356, 938, 973
Bst4CI ACNGT 3 cut(s) 98, 546, 902
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 3 cut(s) 125, 201, 366
BstBAI YACGTR 1 cut(s) 742
BstC8I GCNNGC 6 cut(s) 140, 157, 237, 493, 752, 916
BstDEI CTNAG 4 cut(s) 56, 132, 746, 951
BstFNI CGCG 7 cut(s) 296, 491, 597, 611, 893, 918, 969
BstH2I RGCGCY 3 cut(s) 455, 557, 929
BstHHI GCGC 6 cut(s) 161, 454, 497, 556, 928, 971
BstKTI GATC 7 cut(s) 55, 107, 181, 252, 346, 678, 1019
BstMAI GTCTC 3 cut(s) 135, 954, 980
BstMBI GATC 7 cut(s) 52, 104, 178, 249, 343, 675, 1016
BstMCI CGRYCG 2 cut(s) 317, 548
BstNI CCWGG 3 cut(s) 356, 938, 973
BstSCI CCNGG 4 cut(s) 354, 671, 936, 971
BstSFI CTRYAG 1 cut(s) 872
BstUI CGCG 7 cut(s) 296, 491, 597, 611, 893, 918, 969
BstV1I GCAGC 4 cut(s) 549, 858, 886, 1018
BstV2I GAAGAC 2 cut(s) 18, 327
BstX2I RGATCY 2 cut(s) 104, 1016
BstYI RGATCY 2 cut(s) 104, 1016
BstZI CGGCCG 1 cut(s) 314
BsuRI GGCC 3 cut(s) 316, 671, 914
BtgZI GCGATG 1 cut(s) 257
BtsIMutI CAGTG 3 cut(s) 55, 91, 103
Cac8I GCNNGC 6 cut(s) 140, 157, 237, 493, 752, 916
CaiI CAGNNNCTG 1 cut(s) 90
CciI TCATGA 1 cut(s) 678
CfoI GCGC 6 cut(s) 161, 454, 497, 556, 928, 971
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 3 cut(s) 445, 895, 913
CseI GACGC 5 cut(s) 114, 190, 355, 600, 617
Csp6I GTAC 1 cut(s) 361
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 4 cut(s) 34, 679, 721, 907
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 4 cut(s) 56, 132, 746, 951
DpnI GATC 7 cut(s) 54, 106, 180, 251, 345, 677, 1018
DpnII GATC 7 cut(s) 52, 104, 178, 249, 343, 675, 1016
EaeI YGGCCR 1 cut(s) 314
EagI CGGCCG 1 cut(s) 314
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EciI GGCGGA 4 cut(s) 55, 603, 719, 998
Ecl136II GAGCTC 1 cut(s) 412
EclXI CGGCCG 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 414
Eco32I GATATC 1 cut(s) 855
Eco47I GGWCC 2 cut(s) 445, 895
Eco47III AGCGCT 3 cut(s) 453, 555, 927
Eco52I CGGCCG 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 412
EcoRI GAATTC 1 cut(s) 591
EcoRII CCWGG 3 cut(s) 354, 936, 971
EcoRV GATATC 1 cut(s) 855
EcoT38I GRGCYC 1 cut(s) 414
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 4 cut(s) 37, 682, 724, 910
FaiI YATR 7 cut(s) 35, 416, 634, 680, 722, 739, 908
FatI CATG 4 cut(s) 33, 678, 720, 906
FauI CCCGC 2 cut(s) 791, 923
FblI GTMKAC 1 cut(s) 614
Fnu4HI GCNGC 8 cut(s) 143, 240, 489, 563, 598, 872, 875, 1032
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 8 cut(s) 143, 240, 489, 563, 598, 872, 875, 1032
FspBI CTAG 1 cut(s) 578
GlaI GCGC 6 cut(s) 160, 453, 496, 555, 927, 970
GluI GCNGC 8 cut(s) 143, 240, 489, 563, 598, 872, 875, 1032
GsuI CTGGAG 2 cut(s) 332, 338
HaeII RGCGCY 3 cut(s) 455, 557, 929
HaeIII GGCC 3 cut(s) 316, 671, 914
HapII CCGG 8 cut(s) 108, 139, 213, 672, 767, 806, 957, 1020
HgaI GACGC 5 cut(s) 114, 190, 355, 600, 617
HhaI GCGC 6 cut(s) 161, 454, 497, 556, 928, 971
Hin1I GRCGYC 3 cut(s) 125, 201, 366
Hin1II CATG 4 cut(s) 37, 682, 724, 910
Hin6I GCGC 6 cut(s) 159, 452, 495, 554, 926, 969
HinP1I GCGC 6 cut(s) 159, 452, 495, 554, 926, 969
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 4 cut(s) 209, 376, 571, 802
HpaII CCGG 8 cut(s) 108, 139, 213, 672, 767, 806, 957, 1020
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 3 cut(s) 615, 727, 898
Hpy188III TCNNGA 6 cut(s) 148, 426, 457, 549, 578, 679
Hpy8I GTNNAC 3 cut(s) 615, 727, 898
Hpy99I CGWCG 7 cut(s) 130, 179, 401, 427, 616, 619, 1031
HpyAV CCTTC 4 cut(s) 598, 788, 841, 914
HpyCH4III ACNGT 3 cut(s) 98, 546, 902
HpyCH4IV ACGT 3 cut(s) 187, 741, 1026
HpyCH4V TGCA 3 cut(s) 93, 874, 1034
HpyF3I CTNAG 4 cut(s) 56, 132, 746, 951
HpySE526I ACGT 3 cut(s) 187, 741, 1026
Hsp92I GRCGYC 3 cut(s) 125, 201, 366
Hsp92II CATG 4 cut(s) 37, 682, 724, 910
HspAI GCGC 6 cut(s) 159, 452, 495, 554, 926, 969
KroI GCCGGC 1 cut(s) 138
KroNI GCCGGC 1 cut(s) 140
Kzo9I GATC 7 cut(s) 52, 104, 178, 249, 343, 675, 1016
LguI GCTCTTC 1 cut(s) 219
Lsp1109I GCAGC 4 cut(s) 549, 858, 886, 1018
MaeI CTAG 1 cut(s) 578
MaeII ACGT 3 cut(s) 187, 741, 1026
MaeIII GTNAC 5 cut(s) 29, 86, 98, 367, 902
MalI GATC 7 cut(s) 54, 106, 180, 251, 345, 677, 1018
MboI GATC 7 cut(s) 52, 104, 178, 249, 343, 675, 1016
MboII GAAGA 5 cut(s) 23, 236, 327, 533, 566
MflI RGATCY 2 cut(s) 104, 1016
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 4 cut(s) 22, 43, 591, 695
MluI ACGCGT 1 cut(s) 609
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 2 cut(s) 198, 494
MroNI GCCGGC 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 1039
MspA1I CMGCKG 3 cut(s) 193, 562, 877
MspI CCGG 8 cut(s) 108, 139, 213, 672, 767, 806, 957, 1020
MspR9I CCNGG 4 cut(s) 356, 673, 938, 973
MvaI CCWGG 3 cut(s) 356, 938, 973
MvnI CGCG 7 cut(s) 296, 491, 597, 611, 893, 918, 969
NaeI GCCGGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 673
NdeII GATC 7 cut(s) 52, 104, 178, 249, 343, 675, 1016
NgoMIV GCCGGC 1 cut(s) 138
NlaIII CATG 4 cut(s) 37, 682, 724, 910
NlaIV GGNNCC 3 cut(s) 146, 257, 765
NmuCI GTSAC 3 cut(s) 86, 98, 367
OliI CACNNNNGTG 1 cut(s) 1039
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 678
PciSI GCTCTTC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 747
PdiI GCCGGC 1 cut(s) 140
PfeI GAWTC 3 cut(s) 376, 571, 802
PfoI TCCNGGA 1 cut(s) 354
PkrI GCNGC 8 cut(s) 144, 241, 490, 564, 599, 873, 876, 1033
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 742
Psp124BI GAGCTC 1 cut(s) 414
Psp6I CCWGG 3 cut(s) 354, 936, 971
PspGI CCWGG 3 cut(s) 354, 936, 971
PspN4I GGNNCC 3 cut(s) 146, 257, 765
PspPI GGNCC 3 cut(s) 445, 895, 913
PspXI VCTCGAGB 1 cut(s) 206
PstI CTGCAG 1 cut(s) 876
PstNI CAGNNNCTG 1 cut(s) 90
PsuI RGATCY 2 cut(s) 104, 1016
PvuII CAGCTG 2 cut(s) 193, 877
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 1039
SacI GAGCTC 1 cut(s) 414
SalI GTCGAC 1 cut(s) 613
SapI GCTCTTC 1 cut(s) 219
SatI GCNGC 8 cut(s) 143, 240, 489, 563, 598, 872, 875, 1032
Sau3AI GATC 7 cut(s) 52, 104, 178, 249, 343, 675, 1016
Sau96I GGNCC 3 cut(s) 445, 895, 913
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 4 cut(s) 356, 673, 938, 973
SduI GDGCHC 1 cut(s) 414
SfcI CTRYAG 1 cut(s) 872
Sfr274I CTCGAG 1 cut(s) 206
SgrDI CGTCGACG 1 cut(s) 613
SinI GGWCC 2 cut(s) 445, 895
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 1039
SmlI CTYRAG 2 cut(s) 206, 455
SmoI CTYRAG 2 cut(s) 206, 455
Sse9I AATT 4 cut(s) 22, 43, 591, 695
SspMI CTAG 1 cut(s) 578
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 4 cut(s) 354, 671, 936, 971
TaaI ACNGT 3 cut(s) 98, 546, 902
TaiI ACGT 3 cut(s) 190, 744, 1029
TaqI TCGA 4 cut(s) 207, 218, 614, 775
TasI AATT 4 cut(s) 22, 43, 591, 695
TauI GCSGC 4 cut(s) 145, 242, 491, 600
TfiI GAWTC 3 cut(s) 376, 571, 802
TscAI CASTG 3 cut(s) 55, 91, 103
TseFI GTSAC 3 cut(s) 86, 98, 367
TseI GCWGC 4 cut(s) 562, 871, 874, 1031
Tsp45I GTSAC 3 cut(s) 86, 98, 367
TspDTI ATGAA 2 cut(s) 24, 695
TspGWI ACGGA 2 cut(s) 318, 494
TspRI CASTG 3 cut(s) 55, 91, 103
VpaK11BI GGWCC 2 cut(s) 445, 895
XapI RAATTY 2 cut(s) 43, 591
XbaI TCTAGA 1 cut(s) 577
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 614
XspI CTAG 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.