pycom09g14900

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010161
Physical Location & Seq
Forward (+)
14697188 .. 14698534
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g14900.1

Sequence Viewer

Length: 1014 bp
ATGGAGATGGAAAATCCAGCGAATTTCAGTTACATGGGGAGGAACTTCAGCGATCTGAGCAACGGCGATAACTCCTCTGCTTTCAGCGAGTGTAACAGCGATAGATCCGGTGAGTTCCCGACGACATCGTCCCAGAGCCGGCAGCTTCTGATTGCCTACGCTTTCGACAACTCCGACGATATGATTCAACAGCTCGTCGCCGTGCTCGAGGCCGGTTCGACTGAGGAGCAGAAGCAGGCGGCGATGGAAATCAGGCTCCTCGCCAAGAACAAATCTGAAAATCGGCTCAAAATTGCCCGAAACGGTGCGATTAAGCCGTTGCTTTCGCTCCTATCGTCGTCTGATCTCCAGCTCCAGGAGTACGGCGTCACCGCGATTCTCAACCTCTTGCTGTGCTCCGTCAAAGAGAACAAGATTAAAGCCGTCGAGTCGGGAATCATGAAGCCGCTTGTGGAACTGATGGCGGACTTCGGGTCGAACATGGTGGACAAGTCGGCGTACGTGCTGAGCGTCCTCGTGTCGGTGCCGGAGGCCAGCGCAGCGGTTGCAAAGGTCTACAGTCAGCGAGATTCGGTGGGTTCTCCAAAGTCAGTGACCGCCTTTAAACAACTAGCTGGTCGAGAAGATCGACGCTTTGTACTACCTCCAAACAGCAGCTCCAGCTCGCCCAAAGCCTTCGTGCTCTCCGTCCAAACTTCACGGCCGTGCCCTCCATTGCTGAAGCTCCCCTACTTTCGAACCTGCTCATCGCCCAGCGTTGCACCTCTGTTGCAACACCTTCACTTCCCCTGCACAACCTCAAGCTGCCGTGCCACTTCTCCTCCGCCATGGCTGCTGCCTTTGAATGTGATCAACAAAATCAAAGTTTGTCAACTCACACCCAAAGATCGATCTTCCGTCTGCTTGCCTCTGCTGCTGCCTTTGAATGTGATTGACAAAATCAAAGTTTGTCAACTCACACCCAAAGATCTCATCCGTCTGCTTGCCTCTGCTGCTGCCTTTGAATGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

338

Amino Acids

36.72

Weight (kDa)

8.62

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 56 - 183 3.2e-09 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 59 - 180 6.6e-06 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 127
Acc36I ACCTGC 1 cut(s) 749
AccB1I GGYRCC 1 cut(s) 523
AccI GTMKAC 1 cut(s) 555
AccII CGCG 1 cut(s) 374
AciI CCGC 7 cut(s) 239, 372, 446, 464, 542, 597, 824
AclWI GGATC 1 cut(s) 99
AcoI YGGCCR 1 cut(s) 701
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 2 cut(s) 31, 740
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 3 cut(s) 362, 500, 639
AfiI CCNNNNNNNGG 3 cut(s) 138, 355, 520
AgsI TTSAA 4 cut(s) 188, 844, 925, 1004
AhdI GACNNNNNGTC 1 cut(s) 472
AjnI CCWGG 1 cut(s) 354
AleI CACNNNNGTG 1 cut(s) 703
AluBI AGCT 8 cut(s) 145, 193, 352, 614, 657, 663, 724, 804
AluI AGCT 8 cut(s) 145, 193, 352, 614, 657, 663, 724, 804
Alw21I GWGCWC 3 cut(s) 207, 398, 684
AlwI GGATC 1 cut(s) 99
AlwNI CAGNNNCTG 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 3 cut(s) 210, 531, 701
ApoI RAATTY 1 cut(s) 22
AspLEI GCGC 1 cut(s) 539
AsuHPI GGTGA 2 cut(s) 122, 361
AsuII TTCGAA 1 cut(s) 736
AvaI CYCGRG 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 710
BanI GGYRCC 1 cut(s) 523
BarI GAAGNNNNNNTAC 2 cut(s) 713, 745
BauI CACGAG 1 cut(s) 515
Bbv12I GWGCWC 3 cut(s) 207, 398, 684
BccI CCATC 2 cut(s) 238, 454
BceAI ACGGC 8 cut(s) 79, 185, 301, 379, 407, 688, 716, 792
BciT130I CCWGG 1 cut(s) 356
BclI TGATCA 1 cut(s) 849
BfaI CTAG 1 cut(s) 611
BfmI CTRYAG 1 cut(s) 556
BfuAI ACCTGC 1 cut(s) 749
BglII AGATCT 1 cut(s) 967
BlpI GCTNAGC 1 cut(s) 506
Bme1390I CCNGG 1 cut(s) 356
BmeRI GACNNNNNGTC 1 cut(s) 472
BmeT110I CYCGRG 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 257, 525
BmrFI CCNGG 1 cut(s) 356
BpmI CTGGAG 3 cut(s) 332, 338, 643
Bpu1102I GCTNAGC 1 cut(s) 506
Bpu14I TTCGAA 1 cut(s) 736
BpuEI CTTGAG 1 cut(s) 784
Bsa29I ATCGAT 1 cut(s) 889
BsaAI YACGTR 1 cut(s) 502
BsaBI GATNNNNATC 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 827
BsaWI WCCGGW 1 cut(s) 107
BsaXI ACNNNNNCTCC 4 cut(s) 641, 671, 805, 835
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 355, 520
Bse118I RCCGGY 2 cut(s) 138, 212
Bse3DI GCAATG 1 cut(s) 713
Bse8I GATNNNNATC 1 cut(s) 248
BseBI CCWGG 1 cut(s) 356
BseCI ATCGAT 1 cut(s) 889
BseDI CCNNGG 1 cut(s) 827
BseGI GGATG 1 cut(s) 972
BseJI GATNNNNATC 1 cut(s) 248
BseLI CCNNNNNNNGG 3 cut(s) 138, 355, 520
BseMI GCAATG 1 cut(s) 713
BseMII CTCAG 3 cut(s) 47, 213, 497
BseRI GAGGAG 4 cut(s) 64, 239, 248, 810
BseSI GKGCMC 1 cut(s) 710
BseX3I CGGCCG 1 cut(s) 701
BseYI CCCAGC 1 cut(s) 752
BsgI GTGCAG 1 cut(s) 775
Bsh1236I CGCG 1 cut(s) 374
Bsh1285I CGRYCG 1 cut(s) 704
BshFI GGCC 3 cut(s) 212, 533, 703
BshNI GGYRCC 1 cut(s) 523
BshVI ATCGAT 1 cut(s) 889
BsiEI CGRYCG 1 cut(s) 704
BsiHKAI GWGCWC 3 cut(s) 207, 398, 684
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 4 cut(s) 108, 139, 213, 527
BsiWI CGTACG 1 cut(s) 498
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 3 cut(s) 138, 355, 520
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 3 cut(s) 212, 533, 703
BsoBI CYCGRG 1 cut(s) 206
Bsp119I TTCGAA 1 cut(s) 736
Bsp1286I GDGCHC 4 cut(s) 207, 398, 684, 710
Bsp143I GATC 8 cut(s) 52, 104, 343, 625, 849, 886, 890, 967
Bsp1720I GCTNAGC 1 cut(s) 506
Bsp19I CCATGG 1 cut(s) 827
BspACI CCGC 7 cut(s) 239, 372, 446, 464, 542, 597, 824
BspANI GGCC 3 cut(s) 212, 533, 703
BspCNI CTCAG 3 cut(s) 48, 214, 498
BspDI ATCGAT 1 cut(s) 889
BspFNI CGCG 1 cut(s) 374
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 2 cut(s) 257, 525
BspMI ACCTGC 1 cut(s) 749
BspPI GGATC 1 cut(s) 99
BspT104I TTCGAA 1 cut(s) 736
BspT107I GGYRCC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 713
BsrFI RCCGGY 2 cut(s) 138, 212
BssAI RCCGGY 2 cut(s) 138, 212
BssECI CCNNGG 1 cut(s) 827
BssMI GATC 8 cut(s) 52, 104, 343, 625, 849, 886, 890, 967
BssNI GRCGYC 1 cut(s) 366
BssSI CACGAG 1 cut(s) 515
BssT1I CCWWGG 1 cut(s) 827
Bst2BI CACGAG 1 cut(s) 515
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 305, 560
BstACI GRCGYC 1 cut(s) 366
BstAPI GCANNNNNTGC 1 cut(s) 545
BstBAI YACGTR 1 cut(s) 502
BstBI TTCGAA 1 cut(s) 736
BstC8I GCNNGC 6 cut(s) 140, 237, 535, 665, 905, 984
BstDEI CTNAG 3 cut(s) 56, 222, 506
BstDSI CCRYGG 1 cut(s) 827
BstF5I GGATG 1 cut(s) 972
BstFNI CGCG 1 cut(s) 374
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 8 cut(s) 55, 107, 346, 628, 852, 889, 893, 970
BstMBI GATC 8 cut(s) 52, 104, 343, 625, 849, 886, 890, 967
BstMCI CGRYCG 1 cut(s) 704
BstMWI GCNNNNNNNGC 7 cut(s) 57, 539, 545, 660, 832, 913, 992
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 1 cut(s) 556
BstSLI GKGCMC 1 cut(s) 710
BstUI CGCG 1 cut(s) 374
BstX2I RGATCY 2 cut(s) 104, 967
BstYI RGATCY 2 cut(s) 104, 967
BstZI CGGCCG 1 cut(s) 701
Bsu15I ATCGAT 1 cut(s) 889
BsuRI GGCC 3 cut(s) 212, 533, 703
BsuTUI ATCGAT 1 cut(s) 889
BtgI CCRYGG 1 cut(s) 827
BtgZI GCGATG 2 cut(s) 257, 732
BtsCI GGATG 1 cut(s) 972
BtsIMutI CAGTG 1 cut(s) 597
BveI ACCTGC 1 cut(s) 749
Cac8I GCNNGC 6 cut(s) 140, 237, 535, 665, 905, 984
CaiI CAGNNNCTG 1 cut(s) 148
CciI TCATGA 1 cut(s) 438
CfoI GCGC 1 cut(s) 539
Cfr10I RCCGGY 2 cut(s) 138, 212
ClaI ATCGAT 1 cut(s) 889
CseI GACGC 3 cut(s) 355, 499, 639
Csp6I GTAC 3 cut(s) 361, 499, 638
CviAII CATG 4 cut(s) 34, 439, 481, 828
CviQI GTAC 3 cut(s) 361, 499, 638
DdeI CTNAG 3 cut(s) 56, 222, 506
DpnI GATC 8 cut(s) 54, 106, 345, 627, 851, 888, 892, 969
DpnII GATC 8 cut(s) 52, 104, 343, 625, 849, 886, 890, 967
DraI TTTAAA 1 cut(s) 604
DrdI GACNNNNNNGTC 1 cut(s) 127
DriI GACNNNNNGTC 1 cut(s) 472
DseDI GACNNNNNNGTC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 701
EagI CGGCCG 1 cut(s) 701
Eam1105I GACNNNNNGTC 1 cut(s) 472
EciI GGCGGA 2 cut(s) 479, 813
EclXI CGGCCG 1 cut(s) 701
Eco130I CCWWGG 1 cut(s) 827
Eco52I CGGCCG 1 cut(s) 701
Eco57I CTGAAG 2 cut(s) 31, 740
Eco88I CYCGRG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 827
ErhI CCWWGG 1 cut(s) 827
FaeI CATG 4 cut(s) 37, 442, 484, 831
FaiI YATR 5 cut(s) 35, 182, 440, 482, 829
FaqI GGGAC 1 cut(s) 115
FatI CATG 4 cut(s) 33, 438, 480, 827
FbaI TGATCA 1 cut(s) 849
FblI GTMKAC 1 cut(s) 555
FokI GGATG 1 cut(s) 959
FspBI CTAG 1 cut(s) 611
GlaI GCGC 1 cut(s) 538
GsaI CCCAGC 1 cut(s) 756
GsuI CTGGAG 3 cut(s) 332, 338, 643
HaeIII GGCC 3 cut(s) 212, 533, 703
HapII CCGG 4 cut(s) 108, 139, 213, 527
HgaI GACGC 3 cut(s) 355, 499, 639
HhaI GCGC 1 cut(s) 539
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 4 cut(s) 37, 442, 484, 831
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 2 cut(s) 872, 953
HindII GTYRAC 2 cut(s) 872, 953
HinfI GANTC 5 cut(s) 184, 376, 428, 435, 569
HpaII CCGG 4 cut(s) 108, 139, 213, 527
HphI GGTGA 2 cut(s) 122, 361
Hpy166II GTNNAC 4 cut(s) 487, 556, 872, 953
Hpy188I TCNGA 5 cut(s) 57, 150, 175, 277, 343
Hpy188III TCNNGA 4 cut(s) 118, 432, 439, 620
Hpy8I GTNNAC 4 cut(s) 487, 556, 872, 953
Hpy99I CGWCG 6 cut(s) 124, 179, 200, 340, 428, 633
HpyAV CCTTC 2 cut(s) 685, 788
HpyCH4III ACNGT 2 cut(s) 305, 560
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 4 cut(s) 548, 761, 772, 792
HpyF10VI GCNNNNNNNGC 7 cut(s) 57, 539, 545, 660, 832, 913, 992
HpyF3I CTNAG 3 cut(s) 56, 222, 506
HpySE526I ACGT 1 cut(s) 501
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 4 cut(s) 37, 442, 484, 831
HspAI GCGC 1 cut(s) 537
KroI GCCGGC 1 cut(s) 138
KroNI GCCGGC 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 849
Kzo9I GATC 8 cut(s) 52, 104, 343, 625, 849, 886, 890, 967
LmnI GCTCC 7 cut(s) 226, 261, 333, 357, 401, 662, 729
MaeI CTAG 1 cut(s) 611
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 4 cut(s) 29, 92, 367, 592
MalI GATC 8 cut(s) 54, 106, 345, 627, 851, 888, 892, 969
MboI GATC 8 cut(s) 52, 104, 343, 625, 849, 886, 890, 967
MboII GAAGA 2 cut(s) 635, 885
MflI RGATCY 2 cut(s) 104, 967
MhlI GDGCHC 4 cut(s) 207, 398, 684, 710
MluCI AATT 2 cut(s) 22, 291
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 198
MroNI GCCGGC 1 cut(s) 138
MseI TTAA 3 cut(s) 312, 417, 603
MslI CAYNNNNRTG 1 cut(s) 703
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 4 cut(s) 108, 139, 213, 527
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 1 cut(s) 374
MwoI GCNNNNNNNGC 7 cut(s) 57, 539, 545, 660, 832, 913, 992
NaeI GCCGGC 1 cut(s) 140
NcoI CCATGG 1 cut(s) 827
NdeII GATC 8 cut(s) 52, 104, 343, 625, 849, 886, 890, 967
NgoMIV GCCGGC 1 cut(s) 138
NlaIII CATG 4 cut(s) 37, 442, 484, 831
NlaIV GGNNCC 2 cut(s) 257, 525
NmuCI GTSAC 2 cut(s) 367, 592
NspV TTCGAA 1 cut(s) 736
OliI CACNNNNGTG 1 cut(s) 703
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 438
PcsI WCGNNNNNNNCGW 6 cut(s) 171, 204, 332, 507, 625, 684
PdiI GCCGGC 1 cut(s) 140
PfeI GAWTC 4 cut(s) 184, 376, 435, 569
Pfl23II CGTACG 1 cut(s) 498
PflFI GACNNNGTC 1 cut(s) 127
PfoI TCCNGGA 1 cut(s) 354
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 502
Psp6I CCWGG 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 752
PspGI CCWGG 1 cut(s) 354
PspLI CGTACG 1 cut(s) 498
PspN4I GGNNCC 2 cut(s) 257, 525
PspXI VCTCGAGB 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 2 cut(s) 104, 967
PsyI GACNNNGTC 1 cut(s) 127
RsaI GTAC 3 cut(s) 362, 500, 639
RsaNI GTAC 3 cut(s) 361, 499, 638
RseI CAYNNNNRTG 1 cut(s) 703
SaqAI TTAA 3 cut(s) 312, 417, 603
Sau3AI GATC 8 cut(s) 52, 104, 343, 625, 849, 886, 890, 967
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 4 cut(s) 207, 398, 684, 710
SfcI CTRYAG 1 cut(s) 556
Sfr274I CTCGAG 1 cut(s) 206
SfuI TTCGAA 1 cut(s) 736
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 703
SmlI CTYRAG 2 cut(s) 206, 799
SmoI CTYRAG 2 cut(s) 206, 799
Sse9I AATT 2 cut(s) 22, 291
SsiI CCGC 7 cut(s) 239, 372, 446, 464, 542, 597, 824
SspMI CTAG 1 cut(s) 611
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 827
TaaI ACNGT 2 cut(s) 305, 560
TaiI ACGT 1 cut(s) 504
TaqI TCGA 9 cut(s) 165, 207, 218, 426, 476, 619, 628, 736, 889
TasI AATT 2 cut(s) 22, 291
TatI WGTACW 1 cut(s) 637
TauI GCSGC 2 cut(s) 242, 448
TfiI GAWTC 4 cut(s) 184, 376, 435, 569
Tru1I TTAA 3 cut(s) 312, 417, 603
Tru9I TTAA 3 cut(s) 312, 417, 603
TscAI CASTG 1 cut(s) 597
TseFI GTSAC 2 cut(s) 367, 592
Tsp45I GTSAC 2 cut(s) 367, 592
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 4 cut(s) 388, 676, 886, 965
TspRI CASTG 1 cut(s) 597
Tth111I GACNNNGTC 1 cut(s) 127
XapI RAATTY 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 555
XspI CTAG 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.