Rmu_co8377779.1_g000001

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8377779.1
OG0010161
Physical Location & Seq
Reverse (-)
2 .. 1115
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8377779.1_g000001.1.cds

Sequence Viewer

Length: 1047 bp
atggagactgaaaacccatccaatttcagttacatggggcggaatttcagcgatctgagtatcggcgacagctcctctgctttcagtgactgcaacagtgacagatccggcgagttccaaacggcgtcgtctcagagccggcggctcctgattgcctgcgcttcggacaactccgacgatctgatacgtcagctggtcggcgtcctcgagtccggttcgattgaagagcagaagcaagcggcgatggagatcaggctcctcgccaaaaacaaatcggaaaaccgcctcaaaatcgcggaatacggagcgatacggccgttgatttcgctcttgtcttcctccgatctccagctccaggagtacggcgtcacggcgattctgaacctctcgctctgcgacgagaacaaggagctcatagcttcgtcgggagcaatcaagcctctggtccgcgcgctcaagaccggaaatccaaccacgaaagagaacgccgcgtgcgctctgctccgtctatctcaaatggaagagaacaaagtcgcaatcggacggtcgggagcgcttccgctgctggtgaatcttctagagaacggcggaattcgcggcaagaaggacgcgtcgacggctctgtattctctatgctcggtaaaagagaacaaaatcagagccgttcaggccgggatcatgaagccgttggtggaattgatggcggatttcagttcaaacatggtggacaagtcggcatacgtgctgagcgtgctggtttcggtgccggaggctcgaacggcgttggtggaggaaggcgggattccggtgctggtggaaatcgtggaggttgggtcgcagaggcagaaggagatatcggtggcgatattgttgcagctgtgcgagaataacgctgtccaccgtaacatggtggcccgcgaaggagcgatacctcccctggtggctctgtctcagtccggcactaatcgcgccaggcaaaagctggtcgaggacccagagctggctgacgcggcgttggctctttttgaaaatattcccgaaattaat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

349

Amino Acids

37.59

Weight (kDa)

5.07

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 763
AccI GTMKAC 1 cut(s) 614
AccII CGCG 9 cut(s) 296, 450, 452, 491, 597, 611, 918, 969, 1010
AclWI GGATC 2 cut(s) 99, 683
AcoI YGGCCR 1 cut(s) 314
AcsI RAATTY 2 cut(s) 43, 591
AcyI GRCGYC 3 cut(s) 125, 201, 366
AfaI GTAC 1 cut(s) 362
AfeI AGCGCT 1 cut(s) 555
AfiI CCNNNNNNNGG 3 cut(s) 355, 907, 1000
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 3 cut(s) 224, 717, 1028
AjnI CCWGG 3 cut(s) 354, 936, 971
AluBI AGCT 8 cut(s) 72, 193, 352, 412, 419, 877, 982, 1000
AluI AGCT 8 cut(s) 72, 193, 352, 412, 419, 877, 982, 1000
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 2 cut(s) 135, 954
AlwI GGATC 2 cut(s) 99, 683
AlwNI CAGNNNCTG 1 cut(s) 90
Ama87I CYCGRG 1 cut(s) 206
Aor51HI AGCGCT 1 cut(s) 555
AoxI GGCC 3 cut(s) 314, 669, 912
ApeKI GCWGC 2 cut(s) 562, 874
ApoI RAATTY 2 cut(s) 43, 591
AseI ATTAAT 1 cut(s) 1044
Asp700I GAANNNNTTC 1 cut(s) 1032
AspLEI GCGC 6 cut(s) 161, 452, 454, 497, 556, 971
AspS9I GGNCC 3 cut(s) 445, 913, 991
AsuC2I CCSGG 1 cut(s) 673
AsuHPI GGTGA 1 cut(s) 580
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 2 cut(s) 445, 991
BaeI ACNNNNGTAYC 2 cut(s) 302, 335
BanI GGYRCC 1 cut(s) 763
BanII GRGCYC 1 cut(s) 414
BarI GAAGNNNNNNTAC 2 cut(s) 912, 944
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 549, 886
BccI CCATC 3 cut(s) 25, 238, 694
BcgI CGANNNNNNTGC 2 cut(s) 853, 887
BciT130I CCWGG 3 cut(s) 356, 938, 973
BcnI CCSGG 1 cut(s) 673
BcoDI GTCTC 2 cut(s) 135, 954
BfaI CTAG 1 cut(s) 578
BfoI RGCGCY 1 cut(s) 557
BglI GCCNNNNNGGC 1 cut(s) 668
BisI GCNGC 7 cut(s) 143, 240, 489, 563, 598, 875, 1011
BlpI GCTNAGC 1 cut(s) 746
BlsI GCNGC 7 cut(s) 144, 241, 490, 564, 599, 876, 1012
Bme1390I CCNGG 4 cut(s) 356, 673, 938, 973
Bme18I GGWCC 2 cut(s) 445, 991
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 3 cut(s) 445, 913, 991
BmiI GGNNCC 4 cut(s) 146, 257, 765, 993
BmrFI CCNGG 4 cut(s) 356, 673, 938, 973
BpiI GAAGAC 1 cut(s) 327
BpmI CTGGAG 2 cut(s) 332, 338
Bpu1102I GCTNAGC 1 cut(s) 746
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 1 cut(s) 673
BsaAI YACGTR 1 cut(s) 742
BsaBI GATNNNNATC 1 cut(s) 248
BsaHI GRCGYC 3 cut(s) 125, 201, 366
BsaJI CCNNGG 1 cut(s) 936
BsaWI WCCGGW 3 cut(s) 212, 461, 805
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 907, 1000
Bse118I RCCGGY 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 248
BseBI CCWGG 3 cut(s) 356, 938, 973
BseDI CCNNGG 1 cut(s) 936
BseGI GGATG 1 cut(s) 17
BseJI GATNNNNATC 1 cut(s) 248
BseLI CCNNNNNNNGG 3 cut(s) 355, 907, 1000
BseMII CTCAG 4 cut(s) 47, 146, 737, 965
BsePI GCGCGC 1 cut(s) 450
BseRI GAGGAG 2 cut(s) 64, 248
BseX3I CGGCCG 1 cut(s) 314
BseXI GCAGC 2 cut(s) 549, 886
Bsh1236I CGCG 9 cut(s) 296, 450, 452, 491, 597, 611, 918, 969, 1010
Bsh1285I CGRYCG 2 cut(s) 317, 548
BshFI GGCC 3 cut(s) 316, 671, 914
BshNI GGYRCC 1 cut(s) 763
BsiEI CGRYCG 2 cut(s) 317, 548
BsiHKAI GWGCWC 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 8 cut(s) 108, 139, 213, 462, 672, 767, 806, 957
BslI CCNNNNNNNGG 3 cut(s) 355, 907, 1000
BsmAI GTCTC 2 cut(s) 135, 954
BsmBI CGTCTC 1 cut(s) 135
BsnI GGCC 3 cut(s) 316, 671, 914
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 6 cut(s) 52, 104, 178, 249, 343, 675
Bsp1720I GCTNAGC 1 cut(s) 746
BspANI GGCC 3 cut(s) 316, 671, 914
BspCNI CTCAG 4 cut(s) 48, 145, 738, 964
BspFNI CGCG 9 cut(s) 296, 450, 452, 491, 597, 611, 918, 969, 1010
BspHI TCATGA 1 cut(s) 678
BspLI GGNNCC 4 cut(s) 146, 257, 765, 993
BspPI GGATC 2 cut(s) 99, 683
BspQI GCTCTTC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 763
BsrFI RCCGGY 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 936
BssHII GCGCGC 1 cut(s) 450
BssMI GATC 6 cut(s) 52, 104, 178, 249, 343, 675
BssNI GRCGYC 3 cut(s) 125, 201, 366
Bst2UI CCWGG 3 cut(s) 356, 938, 973
Bst4CI ACNGT 3 cut(s) 98, 546, 902
Bst6I CTCTTC 2 cut(s) 219, 516
BstACI GRCGYC 3 cut(s) 125, 201, 366
BstBAI YACGTR 1 cut(s) 742
BstC8I GCNNGC 8 cut(s) 140, 157, 237, 452, 493, 752, 916, 1002
BstDEI CTNAG 4 cut(s) 56, 132, 746, 951
BstF5I GGATG 1 cut(s) 17
BstFNI CGCG 9 cut(s) 296, 450, 452, 491, 597, 611, 918, 969, 1010
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 6 cut(s) 161, 452, 454, 497, 556, 971
BstKTI GATC 6 cut(s) 55, 107, 181, 252, 346, 678
BstMAI GTCTC 2 cut(s) 135, 954
BstMBI GATC 6 cut(s) 52, 104, 178, 249, 343, 675
BstMCI CGRYCG 2 cut(s) 317, 548
BstNI CCWGG 3 cut(s) 356, 938, 973
BstSCI CCNGG 4 cut(s) 354, 671, 936, 971
BstUI CGCG 9 cut(s) 296, 450, 452, 491, 597, 611, 918, 969, 1010
BstV1I GCAGC 2 cut(s) 549, 886
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BstZI CGGCCG 1 cut(s) 314
BsuRI GGCC 3 cut(s) 316, 671, 914
BtgZI GCGATG 1 cut(s) 257
BtsCI GGATG 1 cut(s) 17
BtsIMutI CAGTG 2 cut(s) 91, 103
Cac8I GCNNGC 8 cut(s) 140, 157, 237, 452, 493, 752, 916, 1002
CaiI CAGNNNCTG 1 cut(s) 90
CciI TCATGA 1 cut(s) 678
CfoI GCGC 6 cut(s) 161, 452, 454, 497, 556, 971
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 3 cut(s) 445, 913, 991
CseI GACGC 6 cut(s) 114, 190, 355, 600, 617, 1016
Csp6I GTAC 1 cut(s) 361
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 4 cut(s) 34, 679, 721, 907
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 4 cut(s) 56, 132, 746, 951
DpnI GATC 6 cut(s) 54, 106, 180, 251, 345, 677
DpnII GATC 6 cut(s) 52, 104, 178, 249, 343, 675
EaeI YGGCCR 1 cut(s) 314
EagI CGGCCG 1 cut(s) 314
Eam1104I CTCTTC 2 cut(s) 219, 516
EarI CTCTTC 2 cut(s) 219, 516
EciI GGCGGA 3 cut(s) 55, 603, 719
Ecl136II GAGCTC 1 cut(s) 412
EclXI CGGCCG 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 414
Eco32I GATATC 1 cut(s) 855
Eco47I GGWCC 2 cut(s) 445, 991
Eco47III AGCGCT 1 cut(s) 555
Eco52I CGGCCG 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 991
EcoRI GAATTC 1 cut(s) 591
EcoRII CCWGG 3 cut(s) 354, 936, 971
EcoRV GATATC 1 cut(s) 855
EcoT38I GRGCYC 1 cut(s) 414
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 4 cut(s) 37, 682, 724, 910
FaiI YATR 7 cut(s) 35, 416, 634, 680, 722, 739, 908
FatI CATG 4 cut(s) 33, 678, 720, 906
FauI CCCGC 2 cut(s) 791, 923
FblI GTMKAC 1 cut(s) 614
Fnu4HI GCNGC 7 cut(s) 143, 240, 489, 563, 598, 875, 1011
FokI GGATG 1 cut(s) 4
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 7 cut(s) 143, 240, 489, 563, 598, 875, 1011
FspBI CTAG 1 cut(s) 578
GlaI GCGC 6 cut(s) 160, 451, 453, 496, 555, 970
GluI GCNGC 7 cut(s) 143, 240, 489, 563, 598, 875, 1011
GsuI CTGGAG 2 cut(s) 332, 338
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 3 cut(s) 316, 671, 914
HapII CCGG 8 cut(s) 108, 139, 213, 462, 672, 767, 806, 957
HgaI GACGC 6 cut(s) 114, 190, 355, 600, 617, 1016
HhaI GCGC 6 cut(s) 161, 452, 454, 497, 556, 971
Hin1I GRCGYC 3 cut(s) 125, 201, 366
Hin1II CATG 4 cut(s) 37, 682, 724, 910
Hin6I GCGC 6 cut(s) 159, 450, 452, 495, 554, 969
HinP1I GCGC 6 cut(s) 159, 450, 452, 495, 554, 969
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 4 cut(s) 209, 376, 571, 802
HpaII CCGG 8 cut(s) 108, 139, 213, 462, 672, 767, 806, 957
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 3 cut(s) 615, 727, 898
Hpy188III TCNNGA 7 cut(s) 148, 426, 457, 549, 578, 679, 1037
Hpy8I GTNNAC 3 cut(s) 615, 727, 898
Hpy99I CGWCG 6 cut(s) 130, 179, 401, 427, 616, 619
HpyAV CCTTC 4 cut(s) 598, 788, 841, 914
HpyCH4III ACNGT 3 cut(s) 98, 546, 902
HpyCH4IV ACGT 2 cut(s) 187, 741
HpyCH4V TGCA 2 cut(s) 93, 874
HpyF3I CTNAG 4 cut(s) 56, 132, 746, 951
HpySE526I ACGT 2 cut(s) 187, 741
Hsp92I GRCGYC 3 cut(s) 125, 201, 366
Hsp92II CATG 4 cut(s) 37, 682, 724, 910
HspAI GCGC 6 cut(s) 159, 450, 452, 495, 554, 969
KroI GCCGGC 1 cut(s) 138
KroNI GCCGGC 1 cut(s) 140
Kzo9I GATC 6 cut(s) 52, 104, 178, 249, 343, 675
LguI GCTCTTC 1 cut(s) 219
Lsp1109I GCAGC 2 cut(s) 549, 886
MaeI CTAG 1 cut(s) 578
MaeII ACGT 2 cut(s) 187, 741
MaeIII GTNAC 5 cut(s) 29, 86, 98, 367, 902
MalI GATC 6 cut(s) 54, 106, 180, 251, 345, 677
MboI GATC 6 cut(s) 52, 104, 178, 249, 343, 675
MboII GAAGA 4 cut(s) 236, 327, 533, 566
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 5 cut(s) 22, 43, 591, 695, 1041
MluI ACGCGT 1 cut(s) 609
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 2 cut(s) 198, 494
MroNI GCCGGC 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 1032
MseI TTAA 1 cut(s) 1044
MspA1I CMGCKG 3 cut(s) 193, 562, 877
MspI CCGG 8 cut(s) 108, 139, 213, 462, 672, 767, 806, 957
MspR9I CCNGG 4 cut(s) 356, 673, 938, 973
MvaI CCWGG 3 cut(s) 356, 938, 973
MvnI CGCG 9 cut(s) 296, 450, 452, 491, 597, 611, 918, 969, 1010
NaeI GCCGGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 673
NdeII GATC 6 cut(s) 52, 104, 178, 249, 343, 675
NgoMIV GCCGGC 1 cut(s) 138
NlaIII CATG 4 cut(s) 37, 682, 724, 910
NlaIV GGNNCC 4 cut(s) 146, 257, 765, 993
NmuCI GTSAC 3 cut(s) 86, 98, 367
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 678
PauI GCGCGC 1 cut(s) 450
PciSI GCTCTTC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 747
PdiI GCCGGC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 1032
PfeI GAWTC 3 cut(s) 376, 571, 802
PfoI TCCNGGA 1 cut(s) 354
PkrI GCNGC 7 cut(s) 144, 241, 490, 564, 599, 876, 1012
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 742
PpuMI RGGWCCY 1 cut(s) 991
PshBI ATTAAT 1 cut(s) 1044
Psp124BI GAGCTC 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 991
Psp6I CCWGG 3 cut(s) 354, 936, 971
PspGI CCWGG 3 cut(s) 354, 936, 971
PspN4I GGNNCC 4 cut(s) 146, 257, 765, 993
PspPI GGNCC 3 cut(s) 445, 913, 991
PspPPI RGGWCCY 1 cut(s) 991
PspXI VCTCGAGB 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 90
PsuI RGATCY 1 cut(s) 104
PteI GCGCGC 1 cut(s) 450
PvuII CAGCTG 2 cut(s) 193, 877
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SacI GAGCTC 1 cut(s) 414
SalI GTCGAC 1 cut(s) 613
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 1 cut(s) 1044
SatI GCNGC 7 cut(s) 143, 240, 489, 563, 598, 875, 1011
Sau3AI GATC 6 cut(s) 52, 104, 178, 249, 343, 675
Sau96I GGNCC 3 cut(s) 445, 913, 991
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 4 cut(s) 356, 673, 938, 973
SduI GDGCHC 1 cut(s) 414
Sfr274I CTCGAG 1 cut(s) 206
SgrDI CGTCGACG 1 cut(s) 613
SinI GGWCC 2 cut(s) 445, 991
SlaI CTCGAG 1 cut(s) 206
SmlI CTYRAG 2 cut(s) 206, 455
SmoI CTYRAG 2 cut(s) 206, 455
Sse9I AATT 5 cut(s) 22, 43, 591, 695, 1041
SspI AATATT 1 cut(s) 1033
SspMI CTAG 1 cut(s) 578
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 4 cut(s) 354, 671, 936, 971
TaaI ACNGT 3 cut(s) 98, 546, 902
TaiI ACGT 2 cut(s) 190, 744
TaqI TCGA 5 cut(s) 207, 218, 614, 775, 987
TasI AATT 5 cut(s) 22, 43, 591, 695, 1041
TauI GCSGC 5 cut(s) 145, 242, 491, 600, 1013
TfiI GAWTC 3 cut(s) 376, 571, 802
Tru1I TTAA 1 cut(s) 1044
Tru9I TTAA 1 cut(s) 1044
TscAI CASTG 2 cut(s) 91, 103
TseFI GTSAC 3 cut(s) 86, 98, 367
TseI GCWGC 2 cut(s) 562, 874
Tsp45I GTSAC 3 cut(s) 86, 98, 367
TspDTI ATGAA 1 cut(s) 695
TspGWI ACGGA 2 cut(s) 318, 494
TspRI CASTG 2 cut(s) 91, 103
VpaK11BI GGWCC 2 cut(s) 445, 991
VspI ATTAAT 1 cut(s) 1044
XapI RAATTY 2 cut(s) 43, 591
XbaI TCTAGA 1 cut(s) 577
XcmI CCANNNNNNNNNTGG 1 cut(s) 979
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 614
XmnI GAANNNNTTC 1 cut(s) 1032
XspI CTAG 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.