Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010161

Physical Location & Seq

Genomic Coordinates Forward (+)

15349485 .. 15350410

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1179200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTGCAAGAAGGCCAATTTTTTGCTATGCATCAAAATCCATTGGTTAGAAGCAAGTTTCTCCACCCCAACCGCAATAAATGCAGCATTCAAACTGAAACCACAAGCAGCAGCGTTACTCGACGGAGCTGCAGCAGGAGCAGGCGGCGATGGAAATCAGGCTCCTCGCCAAGAACAAGTCCGAAATGGCACGATTAAGCCATTGATTTCGCTCCTATCGTCGTCTGATCTCCAGCTCCAGGAGTACGGCGTTACTGTGATTCTCAACTTCTCGCTGTGCGACGAGAATAAGGAGCTCATCGCTTCGTCAGGAGTAATCAAGCCACTCGTTCGGTCGCTCAAGACGGGGACCGCCACAACGAAAGAGAACACCGCCTGCGCTCTGCTCCGCCTCTCGCAAATCGAAGAGGACAAAGACGCAATCGGACGATCGGGAGTGATTCCGCTTCTGGTGAACCTTCTAGAGTGTGGAGGCTTTCGTGGGAAGAATGACGCGTCGACGACTTTGTACTCGCTTTGCTCGGTCAAAGAGAACAATATTAGAGCCGTCGAGTCGGGAATCATGAAGCCGCTGGTGGAATTGATGGCGGACTTCGGGTCGAACATGGTGGACAAGTCGACGTACGTGCTGAGCGTCCTTGTGTCGGTGCCGGAGGCCCGCGCAACGTTGGTGAAGGAAGCCGAGATTCCGGTGCTGGTGGAAATTGTAAAGGTGGGGTCGCAGCGGCAGAATGAGATATCGGTGGTGATATTACTGAAGCTTTGCGAGAACAGTGGGGTCCACCGTAACATGGTGGTCTGCAACGACGCCAATCGCGCCAAGCAAAAGGCGGAGACATTGACAAAGCTTTTACGGCAACCGAGGTCCGGCAACGGCGCTGCACGACCGTCAGACGTGTCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

302

Amino Acids

32.24

Weight (kDa)

8.73

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	56 - 263	1.1e-11	ARMC5
ARM_PUB	PF25598	94 - 256	5.2e-09	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01400
fragaria_vesca	FvH4_2g33150 FvH4_2g33150 FvH4_2g33150
malus_domestica	MD08G1084400.v1.1 MD09G1179200.v1.1 MD15G1070600.v1.1
prunus_persica	Prupe.1G423300_v2.0.a1
pyrus_communis	pycom09g14900 pycom15g06630
rosa_chinensis	RchiOBHm_Chr6g0309511
rosa_laevigata	RLG00000010559 RLG00000022764
rosa_multiflora	Rmu_co8377779.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159340
rosa_rugosa	Rorug06G0372500
rosa_samantha	Rh6AG485900 Rh6BG495300 Rh6CG500300 Rh6DG486200
rosa_wichuraiana	Rw6G042320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	904
AccB1I	GGYRCC	1 cut(s)	646
AccI	GTMKAC	2 cut(s)	497, 617
AccII	CGCG	3 cut(s)	494, 660, 816
AclI	AACGTT	1 cut(s)	665
AcuI	CTGAAG	1 cut(s)	776
AcyI	GRCGYC	1 cut(s)	807
AfaI	GTAC	3 cut(s)	245, 509, 623
AfiI	CCNNNNNNNGG	4 cut(s)	238, 643, 790, 866
AflIII	ACRYGT	2 cut(s)	492, 894
AgsI	TTSAA	1 cut(s)	91
AhdI	GACNNNNNGTC	1 cut(s)	595
AjiI	CACGTC	1 cut(s)	895
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	5 cut(s)	128, 235, 295, 760, 847
AluI	AGCT	5 cut(s)	128, 235, 295, 760, 847
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	827
AoxI	GGCC	2 cut(s)	12, 654
ApeKI	GCWGC	7 cut(s)	83, 107, 110, 128, 131, 721, 878
AspLEI	GCGC	4 cut(s)	380, 662, 818, 878
AspS9I	GGNCC	4 cut(s)	348, 655, 778, 864
AsuHPI	GGTGA	3 cut(s)	463, 682, 757
AvaII	GGWCC	3 cut(s)	348, 778, 864
BanI	GGYRCC	1 cut(s)	646
BanII	GRGCYC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	7 cut(s)	95, 115, 119, 122, 143, 733, 865
BccI	CCATC	2 cut(s)	143, 577
BceAI	ACGGC	4 cut(s)	262, 530, 869, 889
BcgI	CGANNNNNNTGC	4 cut(s)	110, 144, 607, 641
BciT130I	CCWGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	827
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	879
BlpI	GCTNAGC	1 cut(s)	629
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	3 cut(s)	348, 778, 864
BmeRI	GACNNNNNGTC	1 cut(s)	595
BmgBI	CACGTC	1 cut(s)	895
BmgT120I	GGNCC	4 cut(s)	348, 655, 778, 864
BmiI	GGNNCC	4 cut(s)	162, 349, 648, 779
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	39
BpmI	CTGGAG	2 cut(s)	215, 221
Bpu1102I	GCTNAGC	1 cut(s)	629
BpuEI	CTTGAG	1 cut(s)	323
BsaAI	YACGTR	1 cut(s)	625
BsaBI	GATNNNNATC	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	807
BsaJI	CCNNGG	1 cut(s)	860
BsaWI	WCCGGW	1 cut(s)	688
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 643, 790, 866
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	860
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	4 cut(s)	238, 643, 790, 866
BseMII	CTCAG	1 cut(s)	620
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	7 cut(s)	95, 115, 119, 122, 143, 733, 865
BsgI	GTGCAG	1 cut(s)	864
Bsh1236I	CGCG	3 cut(s)	494, 660, 816
Bsh1285I	CGRYCG	3 cut(s)	335, 431, 887
BshFI	GGCC	2 cut(s)	14, 656
BshNI	GGYRCC	1 cut(s)	646
BsiEI	CGRYCG	3 cut(s)	335, 431, 887
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	650, 689, 867
BsiWI	CGTACG	1 cut(s)	621
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	4 cut(s)	238, 643, 790, 866
BsmAI	GTCTC	1 cut(s)	827
BsmFI	GGGAC	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	14, 656
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	226, 428
Bsp1720I	GCTNAGC	1 cut(s)	629
BspANI	GGCC	2 cut(s)	14, 656
BspCNI	CTCAG	1 cut(s)	621
BspFNI	CGCG	3 cut(s)	494, 660, 816
BspHI	TCATGA	1 cut(s)	561
BspLI	GGNNCC	4 cut(s)	162, 349, 648, 779
BspMAI	CTGCAG	1 cut(s)	133
BspT107I	GGYRCC	1 cut(s)	646
BssECI	CCNNGG	1 cut(s)	860
BssMI	GATC	2 cut(s)	226, 428
BssNI	GRCGYC	1 cut(s)	807
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	4 cut(s)	256, 773, 785, 888
Bst6I	CTCTTC	1 cut(s)	399
BstACI	GRCGYC	1 cut(s)	807
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstBAI	YACGTR	1 cut(s)	625
BstC8I	GCNNGC	3 cut(s)	142, 376, 658
BstDEI	CTNAG	1 cut(s)	629
BstFNI	CGCG	3 cut(s)	494, 660, 816
BstH2I	RGCGCY	1 cut(s)	879
BstHHI	GCGC	4 cut(s)	380, 662, 818, 878
BstKTI	GATC	2 cut(s)	229, 431
BstMAI	GTCTC	1 cut(s)	827
BstMBI	GATC	2 cut(s)	226, 428
BstMCI	CGRYCG	3 cut(s)	335, 431, 887
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 137, 815, 853
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	129
BstUI	CGCG	3 cut(s)	494, 660, 816
BstV1I	GCAGC	7 cut(s)	95, 115, 119, 122, 143, 733, 865
BsuRI	GGCC	2 cut(s)	14, 656
BtgZI	GCGATG	2 cut(s)	162, 283
BtrI	CACGTC	1 cut(s)	895
BtsIMutI	CAGTG	1 cut(s)	778
Cac8I	GCNNGC	3 cut(s)	142, 376, 658
CciI	TCATGA	1 cut(s)	561
CfoI	GCGC	4 cut(s)	380, 662, 818, 878
Cfr13I	GGNCC	4 cut(s)	348, 655, 778, 864
CseI	GACGC	5 cut(s)	425, 483, 500, 622, 815
Csp6I	GTAC	3 cut(s)	244, 508, 622
CviAII	CATG	3 cut(s)	562, 604, 790
CviQI	GTAC	3 cut(s)	244, 508, 622
DdeI	CTNAG	1 cut(s)	629
DpnI	GATC	2 cut(s)	228, 430
DpnII	GATC	2 cut(s)	226, 428
DriI	GACNNNNNGTC	1 cut(s)	595
Eam1104I	CTCTTC	1 cut(s)	399
Eam1105I	GACNNNNNGTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	3 cut(s)	377, 602, 845
Ecl136II	GAGCTC	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	738
Eco47I	GGWCC	3 cut(s)	348, 778, 864
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	776
EcoICRI	GAGCTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	237
EcoRV	GATATC	1 cut(s)	738
EcoT22I	ATGCAT	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	3 cut(s)	565, 607, 793
FaiI	YATR	5 cut(s)	28, 563, 605, 791, 904
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	3 cut(s)	561, 603, 789
FauI	CCCGC	1 cut(s)	665
FblI	GTMKAC	2 cut(s)	497, 617
FriOI	GRGCYC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	461
GlaI	GCGC	4 cut(s)	379, 661, 817, 877
GsuI	CTGGAG	2 cut(s)	215, 221
HaeII	RGCGCY	1 cut(s)	879
HaeIII	GGCC	2 cut(s)	14, 656
HapII	CCGG	3 cut(s)	650, 689, 867
HgaI	GACGC	5 cut(s)	425, 483, 500, 622, 815
HhaI	GCGC	4 cut(s)	380, 662, 818, 878
Hin1I	GRCGYC	1 cut(s)	807
Hin1II	CATG	3 cut(s)	565, 607, 793
Hin6I	GCGC	4 cut(s)	378, 660, 816, 876
HinP1I	GCGC	4 cut(s)	378, 660, 816, 876
HincII	GTYRAC	2 cut(s)	498, 618
HindII	GTYRAC	2 cut(s)	498, 618
HindIII	AAGCTT	2 cut(s)	758, 845
HinfI	GANTC	5 cut(s)	259, 439, 551, 558, 685
HpaII	CCGG	3 cut(s)	650, 689, 867
HphI	GGTGA	3 cut(s)	463, 682, 757
Hpy166II	GTNNAC	5 cut(s)	454, 498, 610, 618, 781
Hpy188I	TCNGA	4 cut(s)	182, 226, 425, 892
Hpy188III	TCNNGA	6 cut(s)	309, 340, 432, 461, 555, 562
Hpy8I	GTNNAC	5 cut(s)	454, 498, 610, 618, 781
Hpy99I	CGWCG	8 cut(s)	125, 223, 284, 499, 502, 551, 622, 809
HpyAV	CCTTC	3 cut(s)	4, 467, 667
HpyCH4III	ACNGT	4 cut(s)	256, 773, 785, 888
HpyCH4IV	ACGT	4 cut(s)	620, 624, 665, 894
HpyCH4V	TGCA	6 cut(s)	6, 30, 83, 131, 801, 881
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 137, 815, 853
HpyF3I	CTNAG	1 cut(s)	629
HpySE526I	ACGT	4 cut(s)	620, 624, 665, 894
Hsp92I	GRCGYC	1 cut(s)	807
Hsp92II	CATG	3 cut(s)	565, 607, 793
HspAI	GCGC	4 cut(s)	378, 660, 816, 876
Kzo9I	GATC	2 cut(s)	226, 428
LmnI	GCTCC	7 cut(s)	125, 137, 166, 216, 240, 292, 390
Lsp1109I	GCAGC	7 cut(s)	95, 115, 119, 122, 143, 733, 865
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	4 cut(s)	620, 624, 665, 894
MaeIII	GTNAC	3 cut(s)	114, 250, 785
MalI	GATC	2 cut(s)	228, 430
MboI	GATC	2 cut(s)	226, 428
MboII	GAAGA	2 cut(s)	416, 496
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	3 cut(s)	16, 578, 702
MluI	ACGCGT	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	560
MnlI	CCTC	6 cut(s)	174, 400, 401, 464, 646, 855
Mph1103I	ATGCAT	1 cut(s)	32
MseI	TTAA	1 cut(s)	195
MspA1I	CMGCKG	2 cut(s)	571, 724
MspI	CCGG	3 cut(s)	650, 689, 867
MspR9I	CCNGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	3 cut(s)	494, 660, 816
MwoI	GCNNNNNNNGC	4 cut(s)	80, 137, 815, 853
NdeII	GATC	2 cut(s)	226, 428
NlaIII	CATG	3 cut(s)	565, 607, 793
NlaIV	GGNNCC	4 cut(s)	162, 349, 648, 779
NmeAIII	GCCGAG	1 cut(s)	706
NsiI	ATGCAT	1 cut(s)	32
PagI	TCATGA	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	2 cut(s)	215, 630
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	4 cut(s)	259, 439, 558, 685
Pfl23II	CGTACG	1 cut(s)	621
PfoI	TCCNGGA	1 cut(s)	237
Ple19I	CGATCG	1 cut(s)	431
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
Ppu21I	YACGTR	1 cut(s)	625
PsiI	TTATAA	1 cut(s)	904
Psp124BI	GAGCTC	1 cut(s)	297
Psp1406I	AACGTT	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspLI	CGTACG	1 cut(s)	621
PspN4I	GGNNCC	4 cut(s)	162, 349, 648, 779
PspPI	GGNCC	4 cut(s)	348, 655, 778, 864
PstI	CTGCAG	1 cut(s)	133
PvuI	CGATCG	1 cut(s)	431
RsaI	GTAC	3 cut(s)	245, 509, 623
RsaNI	GTAC	3 cut(s)	244, 508, 622
SacI	GAGCTC	1 cut(s)	297
SalI	GTCGAC	2 cut(s)	496, 616
SaqAI	TTAA	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	226, 428
Sau96I	GGNCC	4 cut(s)	348, 655, 778, 864
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	297
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	129
SgrDI	CGTCGACG	1 cut(s)	496
SinI	GGWCC	3 cut(s)	348, 778, 864
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	3 cut(s)	16, 578, 702
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	1 cut(s)	461
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	4 cut(s)	256, 773, 785, 888
TaiI	ACGT	4 cut(s)	623, 627, 668, 897
TaqI	TCGA	6 cut(s)	120, 402, 497, 549, 599, 617
TaqII	GACCGA	2 cut(s)	321, 511
TasI	AATT	3 cut(s)	16, 578, 702
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	3 cut(s)	147, 571, 727
TfiI	GAWTC	4 cut(s)	259, 439, 558, 685
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	778
TseI	GCWGC	7 cut(s)	83, 107, 110, 128, 131, 721, 878
TspDTI	ATGAA	1 cut(s)	578
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	778
VpaK11BI	GGWCC	3 cut(s)	348, 778, 864
XbaI	TCTAGA	1 cut(s)	460
XmiI	GTMKAC	2 cut(s)	497, 617
XspI	CTAG	1 cut(s)	461
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.