Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010161

Physical Location & Seq

Genomic Coordinates Reverse (-)

11841139 .. 11845167

Gene Structure 4029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022764

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACGATTACCGGTCGGCCTACGACGTCATCCAAGAGCGTCACCGGCTACGAGCTCGACAGGAGCAACGACAAGTTCACCGCCTATTTCGACGGCGCGTGCAGCTTCTCGCCCGAAGGATCCTCAAGGTCAACGGCGACGGCCACTGAGCCAGCACACCGCCGATCGGAGATTGAAATTGAGGTCTCCAATAGTGACAAATCCGGCGAGTTCCAAATGGCGTTGTCTCAGAGCTGGTGGCTCCTGATTTCCTGCGCTTCGGACAACGCCGACGATCTGATACGTCAGCTGGTCGGCGTCCTCAAGTCCGGTTCGATTGAAGAGCAGAAGCAAACTGCGATGGAGATCAGGCTCCTCGCCAAAAACAAATCAGAAAATTGCCTCAAAATCGCAGAATACGGAGTGATTCGGCCATTGATTTCGCTCTTGTCTTCCTCCAATCTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

150

Amino Acids

16.34

Weight (kDa)

5.42

Isoelectric Point (pI)

66.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01400
fragaria_vesca	FvH4_2g33150 FvH4_2g33150 FvH4_2g33150
malus_domestica	MD08G1084400.v1.1 MD09G1179200.v1.1 MD15G1070600.v1.1
prunus_persica	Prupe.1G423300_v2.0.a1
pyrus_communis	pycom09g14900 pycom15g06630
rosa_chinensis	RchiOBHm_Chr6g0309511
rosa_laevigata	RLG00000010559 RLG00000022764
rosa_multiflora	Rmu_co8377779.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159340
rosa_rugosa	Rorug06G0372500
rosa_samantha	Rh6AG485900 Rh6BG495300 Rh6CG500300 Rh6DG486200
rosa_wichuraiana	Rw6G042320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	29
AccII	CGCG	1 cut(s)	98
AciI	CCGC	2 cut(s)	81, 160
AclWI	GGATC	2 cut(s)	114, 127
AcoI	YGGCCR	2 cut(s)	141, 410
AcyI	GRCGYC	2 cut(s)	26, 297
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgeI	ACCGGT	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	176, 320
AluBI	AGCT	4 cut(s)	55, 105, 234, 289
AluI	AGCT	4 cut(s)	55, 105, 234, 289
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	2 cut(s)	190, 231
AlwI	GGATC	2 cut(s)	114, 127
AoxI	GGCC	3 cut(s)	17, 141, 410
ApeKI	GCWGC	1 cut(s)	102
AsiGI	ACCGGT	1 cut(s)	11
AspLEI	GCGC	2 cut(s)	98, 257
AsuHPI	GGTGA	2 cut(s)	34, 70
BamHI	GGATCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	3 cut(s)	109, 150, 156
BcoDI	GTCTC	2 cut(s)	190, 231
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
BmiI	GGNNCC	3 cut(s)	121, 242, 353
BpiI	GAAGAC	1 cut(s)	423
BpuEI	CTTGAG	2 cut(s)	109, 287
BsaBI	GATNNNNATC	1 cut(s)	344
BsaHI	GRCGYC	2 cut(s)	26, 297
BsaI	GGTCTC	1 cut(s)	190
BsaWI	WCCGGW	2 cut(s)	11, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	2 cut(s)	11, 44
Bse8I	GATNNNNATC	1 cut(s)	344
BseGI	GGATG	1 cut(s)	29
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	138, 242
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	2 cut(s)	16, 167
BshFI	GGCC	3 cut(s)	19, 143, 412
BshTI	ACCGGT	1 cut(s)	11
BsiEI	CGRYCG	2 cut(s)	16, 167
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	4 cut(s)	12, 45, 204, 309
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	190, 231
BsnI	GGCC	3 cut(s)	19, 143, 412
Bso31I	GGTCTC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	119, 164, 274, 345
BspACI	CCGC	2 cut(s)	81, 160
BspANI	GGCC	3 cut(s)	19, 143, 412
BspCNI	CTCAG	2 cut(s)	139, 241
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	3 cut(s)	121, 242, 353
BspPI	GGATC	2 cut(s)	114, 127
BspQI	GCTCTTC	1 cut(s)	315
BspTNI	GGTCTC	1 cut(s)	190
BsrFI	RCCGGY	2 cut(s)	11, 44
BssAI	RCCGGY	2 cut(s)	11, 44
BssMI	GATC	4 cut(s)	119, 164, 274, 345
BssNI	GRCGYC	2 cut(s)	26, 297
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	2 cut(s)	26, 297
BstC8I	GCNNGC	2 cut(s)	100, 153
BstDEI	CTNAG	2 cut(s)	147, 228
BstF5I	GGATG	1 cut(s)	29
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	98, 257
BstKTI	GATC	4 cut(s)	122, 167, 277, 348
BstMAI	GTCTC	2 cut(s)	190, 231
BstMBI	GATC	4 cut(s)	119, 164, 274, 345
BstMCI	CGRYCG	2 cut(s)	16, 167
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 102
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	114
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	19, 143, 412
BtgZI	GCGATG	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	144, 445
Cac8I	GCNNGC	2 cut(s)	100, 153
CfoI	GCGC	2 cut(s)	98, 257
Cfr10I	RCCGGY	2 cut(s)	11, 44
CseI	GACGC	2 cut(s)	28, 286
CspAI	ACCGGT	1 cut(s)	11
DdeI	CTNAG	2 cut(s)	147, 228
DpnI	GATC	4 cut(s)	121, 166, 276, 347
DpnII	GATC	4 cut(s)	119, 164, 274, 345
EaeI	YGGCCR	2 cut(s)	141, 410
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	1 cut(s)	16
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	103
GlaI	GCGC	2 cut(s)	97, 256
GluI	GCNGC	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	19, 143, 412
HapII	CCGG	4 cut(s)	12, 45, 204, 309
HgaI	GACGC	2 cut(s)	28, 286
HhaI	GCGC	2 cut(s)	98, 257
Hin1I	GRCGYC	2 cut(s)	26, 297
Hin6I	GCGC	2 cut(s)	96, 255
HinP1I	GCGC	2 cut(s)	96, 255
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	4 cut(s)	12, 45, 204, 309
HphI	GGTGA	2 cut(s)	34, 70
Hpy166II	GTNNAC	2 cut(s)	78, 132
Hpy188I	TCNGA	5 cut(s)	169, 231, 262, 279, 373
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	2 cut(s)	78, 132
Hpy99I	CGWCG	4 cut(s)	28, 95, 142, 275
HpyAV	CCTTC	1 cut(s)	110
HpyCH4IV	ACGT	2 cut(s)	26, 283
HpyCH4V	TGCA	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 102
HpyF3I	CTNAG	2 cut(s)	147, 228
HpySE526I	ACGT	2 cut(s)	26, 283
Hsp92I	GRCGYC	2 cut(s)	26, 297
HspAI	GCGC	2 cut(s)	96, 255
Kzo9I	GATC	4 cut(s)	119, 164, 274, 345
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	3 cut(s)	63, 246, 357
Lsp1109I	GCAGC	1 cut(s)	114
MaeII	ACGT	2 cut(s)	26, 283
MaeIII	GTNAC	2 cut(s)	40, 194
MalI	GATC	4 cut(s)	121, 166, 276, 347
MboI	GATC	4 cut(s)	119, 164, 274, 345
MboII	GAAGA	2 cut(s)	332, 423
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	2 cut(s)	177, 376
MnlI	CCTC	6 cut(s)	133, 175, 311, 365, 392, 445
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	4 cut(s)	12, 45, 204, 309
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	45, 102
NdeII	GATC	4 cut(s)	119, 164, 274, 345
NlaIV	GGNNCC	3 cut(s)	121, 242, 353
NmuCI	GTSAC	2 cut(s)	40, 194
PciSI	GCTCTTC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	406
PinAI	ACCGGT	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	104
Ple19I	CGATCG	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	121, 242, 353
PsuI	RGATCY	1 cut(s)	119
PvuI	CGATCG	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	315
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	4 cut(s)	119, 164, 274, 345
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	8 cut(s)	29, 57, 107, 131, 186, 236, 286, 291
SmlI	CTYRAG	2 cut(s)	124, 302
SmoI	CTYRAG	2 cut(s)	124, 302
Sse9I	AATT	2 cut(s)	177, 376
SsiI	CCGC	2 cut(s)	81, 160
SstI	GAGCTC	1 cut(s)	57
TaiI	ACGT	2 cut(s)	29, 286
TaqI	TCGA	3 cut(s)	57, 90, 314
TasI	AATT	2 cut(s)	177, 376
TfiI	GAWTC	1 cut(s)	406
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	2 cut(s)	40, 194
TseI	GCWGC	1 cut(s)	102
Tsp45I	GTSAC	2 cut(s)	40, 194
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	151
ZraI	GACGTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.