AT3G01430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017084
Physical Location & Seq
Reverse (-)
165392 .. 166542
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01430.1

Sequence Viewer

Length: 543 bp
ATGAGTCATCAATCGCCGCCGATCGCTGAAGTTGATGCCACCGACGATATGCACGAGGCGTTGTTCGCGAAGCGAGGTTGTTGTTTCCTCATGCCCTGCCTTGCCTCATCTCAGCCATCAACTCGCGGCGGATCTGTGTGGTGGCAACGGATCACGACCGTCGACAAACTCGAACCCGACGAGCGATGGTGGATCCGAGGGTGGCGGAGGATGAGGGAGTGGTCGGAGCTCGTCGCTGGACCTAGATGGAAGACGTATATCCGCCGGTTCGGACGCAGCAACTGCTGTGGAGGAGGAGGAGGGAGAGTCGGAAACAGCAGCGGAGGATGCGGAGGTGGTGCAATGCCTAACCGGTCATCGGATCAGGGTAAATTCCGGTACGATCAGTTGAGCTACTCGTTAAATTTCGATGACGGAAATCAAACCGGACATTTTGACGACGAGTTCCCGTACCGAGATTACTCGATGAGATTCGCTGCGCCTTCCTTACCGGTTTCCACTAAATGCTCAATTGATTTCGATAGCGACATTGATAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.3

Weight (kDa)

6.81

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01430 AT5G14895
fragaria_vesca FvH4_6g50470
malus_domestica MD09G1036100.v1.1 MD17G1037700.v1.1
prunus_persica Prupe.3G281600_v2.0.a1
pyrus_communis pycom111g02900 pycom17g03390
rosa_laevigata RLG00000021989
rosa_multiflora Rmu_sc0009938.1_g000004
rosa_rugosa Rorug02G0552000
rosa_samantha Rh2BG635400 Rh2DG647000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 162
AccII CGCG 2 cut(s) 68, 126
AciI CCGC 7 cut(s) 17, 126, 129, 205, 262, 321, 330
AclWI GGATC 5 cut(s) 139, 158, 187, 200, 369
AcsI RAATTY 2 cut(s) 371, 403
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 2 cut(s) 380, 452
AfiI CCNNNNNNNGG 1 cut(s) 358
AgeI ACCGGT 2 cut(s) 351, 490
AluBI AGCT 2 cut(s) 229, 393
AluI AGCT 2 cut(s) 229, 393
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 5 cut(s) 139, 158, 187, 200, 369
AlwNI CAGNNNCTG 1 cut(s) 282
ApeKI GCWGC 3 cut(s) 276, 318, 476
ApoI RAATTY 2 cut(s) 371, 403
AsiGI ACCGGT 2 cut(s) 351, 490
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 1 cut(s) 239
AvaII GGWCC 1 cut(s) 239
BamHI GGATCC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 231
BauI CACGAG 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 288, 330, 463
BccI CCATC 3 cut(s) 124, 180, 240
BfaI CTAG 1 cut(s) 243
BisI GCNGC 5 cut(s) 17, 127, 277, 319, 477
BlsI GCNGC 5 cut(s) 18, 128, 278, 320, 478
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 194
BmsI GCATC 2 cut(s) 25, 317
BpiI GAAGAC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 4 cut(s) 351, 375, 425, 490
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse118I RCCGGY 3 cut(s) 264, 351, 490
Bse3DI GCAATG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 2 cut(s) 216, 332
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 1 cut(s) 125
BseRI GAGGAG 3 cut(s) 306, 309, 312
BseXI GCAGC 3 cut(s) 288, 330, 463
Bsh1236I CGCG 2 cut(s) 68, 126
Bsh1285I CGRYCG 2 cut(s) 24, 159
BshTI ACCGGT 2 cut(s) 351, 490
BsiEI CGRYCG 2 cut(s) 24, 159
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 5 cut(s) 265, 352, 376, 426, 491
BslI CCNNNNNNNGG 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 6 cut(s) 21, 131, 150, 192, 361, 382
Bsp68I TCGCGA 1 cut(s) 68
BspACI CCGC 7 cut(s) 17, 126, 129, 205, 262, 321, 330
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 2 cut(s) 68, 126
BspLI GGNNCC 1 cut(s) 194
BspPI GGATC 5 cut(s) 139, 158, 187, 200, 369
BsrDI GCAATG 1 cut(s) 348
BsrFI RCCGGY 3 cut(s) 264, 351, 490
BssAI RCCGGY 3 cut(s) 264, 351, 490
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 6 cut(s) 21, 131, 150, 192, 361, 382
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 216, 332
BstFNI CGCG 2 cut(s) 68, 126
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 6 cut(s) 24, 134, 153, 195, 364, 385
BstMBI GATC 6 cut(s) 21, 131, 150, 192, 361, 382
BstMCI CGRYCG 2 cut(s) 24, 159
BstMWI GCNNNNNNNGC 3 cut(s) 65, 282, 327
BstUI CGCG 2 cut(s) 68, 126
BstV1I GCAGC 3 cut(s) 288, 330, 463
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 2 cut(s) 131, 192
BstYI RGATCY 2 cut(s) 131, 192
BtgZI GCGATG 1 cut(s) 199
BtsCI GGATG 2 cut(s) 216, 332
BtuMI TCGCGA 1 cut(s) 68
CaiI CAGNNNCTG 1 cut(s) 282
CfoI GCGC 1 cut(s) 481
Cfr10I RCCGGY 3 cut(s) 264, 351, 490
Cfr13I GGNCC 1 cut(s) 239
CseI GACGC 1 cut(s) 282
Csp6I GTAC 2 cut(s) 379, 451
CspAI ACCGGT 2 cut(s) 351, 490
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 1 cut(s) 91
CviJI RGCY 3 cut(s) 115, 229, 393
CviKI_1 RGCY 3 cut(s) 115, 229, 393
CviQI GTAC 2 cut(s) 379, 451
DdeI CTNAG 1 cut(s) 111
DpnI GATC 6 cut(s) 23, 133, 152, 194, 363, 384
DpnII GATC 6 cut(s) 21, 131, 150, 192, 361, 382
EciI GGCGGA 3 cut(s) 144, 220, 251
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 1 cut(s) 94
FaiI YATR 3 cut(s) 50, 92, 258
FatI CATG 1 cut(s) 90
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 5 cut(s) 17, 127, 277, 319, 477
FokI GGATG 2 cut(s) 223, 339
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 5 cut(s) 17, 127, 277, 319, 477
FspBI CTAG 1 cut(s) 243
GlaI GCGC 1 cut(s) 480
GluI GCNGC 5 cut(s) 17, 127, 277, 319, 477
HapII CCGG 5 cut(s) 265, 352, 376, 426, 491
HgaI GACGC 1 cut(s) 282
HhaI GCGC 1 cut(s) 481
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 3 cut(s) 4, 306, 471
HpaII CCGG 5 cut(s) 265, 352, 376, 426, 491
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 5 cut(s) 197, 226, 272, 311, 361
Hpy188III TCNNGA 2 cut(s) 67, 154
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 5 cut(s) 47, 164, 182, 236, 443
HpyAV CCTTC 1 cut(s) 492
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 52, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 282, 327
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 479
Kzo9I GATC 6 cut(s) 21, 131, 150, 192, 361, 382
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 8 cut(s) 109, 222, 278, 350, 365, 389, 439, 504
Lsp1109I GCAGC 3 cut(s) 288, 330, 463
LweI GCATC 2 cut(s) 25, 317
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 254
MalI GATC 6 cut(s) 23, 133, 152, 194, 363, 384
MboI GATC 6 cut(s) 21, 131, 150, 192, 361, 382
MboII GAAGA 1 cut(s) 262
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 2 cut(s) 131, 192
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 3 cut(s) 371, 403, 510
MlyI GAGTC 2 cut(s) 13, 315
MmeI TCCRAC 2 cut(s) 204, 289
MseI TTAA 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 321
MspI CCGG 5 cut(s) 265, 352, 376, 426, 491
MunI CAATTG 1 cut(s) 510
MvnI CGCG 2 cut(s) 68, 126
MwoI GCNNNNNNNGC 3 cut(s) 65, 282, 327
NdeII GATC 6 cut(s) 21, 131, 150, 192, 361, 382
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 194
NruI TCGCGA 1 cut(s) 68
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 168, 177
PfeI GAWTC 1 cut(s) 471
PinAI ACCGGT 2 cut(s) 351, 490
PkrI GCNGC 5 cut(s) 18, 128, 278, 320, 478
Ple19I CGATCG 1 cut(s) 24
PleI GAGTC 2 cut(s) 12, 314
PpsI GAGTC 2 cut(s) 12, 314
Psp124BI GAGCTC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 282
PsuI RGATCY 2 cut(s) 131, 192
PvuI CGATCG 1 cut(s) 24
RruI TCGCGA 1 cut(s) 68
RsaI GTAC 2 cut(s) 380, 452
RsaNI GTAC 2 cut(s) 379, 451
SacI GAGCTC 1 cut(s) 231
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 5 cut(s) 17, 127, 277, 319, 477
Sau3AI GATC 6 cut(s) 21, 131, 150, 192, 361, 382
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 2 cut(s) 13, 315
SduI GDGCHC 1 cut(s) 231
SetI ASST 6 cut(s) 79, 231, 244, 257, 337, 395
SfaNI GCATC 2 cut(s) 25, 317
SinI GGWCC 1 cut(s) 239
Sse9I AATT 3 cut(s) 371, 403, 510
SsiI CCGC 7 cut(s) 17, 126, 129, 205, 262, 321, 330
SspMI CTAG 1 cut(s) 243
SstI GAGCTC 1 cut(s) 231
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 257
TaqI TCGA 5 cut(s) 162, 171, 408, 464, 519
TasI AATT 3 cut(s) 371, 403, 510
TauI GCSGC 2 cut(s) 19, 129
TfiI GAWTC 1 cut(s) 471
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TseI GCWGC 3 cut(s) 276, 318, 476
TspGWI ACGGA 2 cut(s) 163, 429
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 2 cut(s) 371, 403
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.