MD17G1037700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0017084
Physical Location & Seq
Forward (+)
2743991 .. 2744470
480 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1037700.v1.1.491

Sequence Viewer

Length: 480 bp
ATGTCGTCGAAAACCGAGTACGACGCCGTTCCAAATCCGAAAACCTACTCCGCTGCGGAATCCGATGACGGGGAGGAGTTGGTGCTCTCGAGGAGAAGCGGGTGCTGTTTCTGGATCCCTTGCTTCGGACCCGAACCCTCCTCTCCCGACGGGTCGTGGGAGCGGATCCGGTCCGCCGGCGAATACGAGGATCCGTGGCTGTACCGCGGCTGGAAGAAGATCCGGGAGTGGTCCGAACTTCTCGCCGGTCCCAAGTGGAAGACCTTCATCCGGCGGTTCAACAAAAACAATCCCAGGCGGTCCGGGAAATTTCAATACGACCCCACGAGTTACTCCCTCAACTTCGACGAAGGCCCGGGGCAGAACGGTAATTTGATTGATGATTATTTGTACAGGGATTTCTCGTGCCGGTACGCGTCGATTCCGGTGTCGGCGAAGTCGTCGATGGATTTGAGCGGCGACTCGCCCCCCTTCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.21

Weight (kDa)

5.3

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01430 AT5G14895
fragaria_vesca FvH4_6g50470
malus_domestica MD09G1036100.v1.1 MD17G1037700.v1.1
prunus_persica Prupe.3G281600_v2.0.a1
pyrus_communis pycom111g02900 pycom17g03390
rosa_laevigata RLG00000021989
rosa_multiflora Rmu_sc0009938.1_g000004
rosa_rugosa Rorug02G0552000
rosa_samantha Rh2BG635400 Rh2DG647000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 163, 456
AccII CGCG 2 cut(s) 207, 416
AclWI GGATC 7 cut(s) 109, 122, 160, 173, 185, 198, 214
AcsI RAATTY 1 cut(s) 308
AcvI CACGTG 1 cut(s) 477
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 4 cut(s) 20, 203, 392, 413
AfiI CCNNNNNNNGG 3 cut(s) 69, 125, 270
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 2 cut(s) 280, 314
AjnI CCWGG 1 cut(s) 293
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 7 cut(s) 109, 122, 160, 173, 185, 198, 214
Ama87I CYCGRG 2 cut(s) 88, 355
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 263
AspS9I GGNCC 6 cut(s) 128, 171, 231, 248, 300, 353
AsuC2I CCSGG 4 cut(s) 224, 304, 356, 357
AvaI CYCGRG 2 cut(s) 88, 355
AvaII GGWCC 5 cut(s) 128, 171, 231, 248, 300
BamHI GGATCC 3 cut(s) 114, 165, 190
BauI CACGAG 2 cut(s) 325, 403
BbrPI CACGTG 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 439
BceAI ACGGC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 295
BcnI CCSGG 4 cut(s) 224, 304, 356, 357
BisI GCNGC 3 cut(s) 54, 208, 457
BlsI GCNGC 3 cut(s) 55, 209, 458
Bme1390I CCNGG 5 cut(s) 224, 295, 304, 356, 357
Bme18I GGWCC 5 cut(s) 128, 171, 231, 248, 300
BmeT110I CYCGRG 2 cut(s) 88, 355
BmgT120I GGNCC 6 cut(s) 128, 171, 231, 248, 300, 353
BmiI GGNNCC 5 cut(s) 116, 130, 167, 192, 250
BmrFI CCNGG 5 cut(s) 224, 295, 304, 356, 357
BpiI GAAGAC 1 cut(s) 266
BpuMI CCSGG 4 cut(s) 224, 304, 356, 357
BsaAI YACGTR 1 cut(s) 477
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 5 cut(s) 194, 205, 293, 355, 356
BsaWI WCCGGW 2 cut(s) 168, 424
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 125, 270
Bse118I RCCGGY 3 cut(s) 176, 245, 408
BseBI CCWGG 1 cut(s) 295
BseDI CCNNGG 5 cut(s) 194, 205, 293, 355, 356
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 3 cut(s) 69, 125, 270
BseRI GAGGAG 3 cut(s) 89, 106, 130
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 2 cut(s) 207, 416
BshFI GGCC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 2 cut(s) 88, 355
BsiSI CCGG 9 cut(s) 169, 177, 223, 246, 271, 303, 356, 409, 425
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 3 cut(s) 69, 125, 270
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 1 cut(s) 354
BsoBI CYCGRG 2 cut(s) 88, 355
Bsp1286I GDGCHC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 4 cut(s) 114, 165, 190, 219
BspANI GGCC 1 cut(s) 354
BspFNI CGCG 2 cut(s) 207, 416
BspLI GGNNCC 5 cut(s) 116, 130, 167, 192, 250
BspPI GGATC 7 cut(s) 109, 122, 160, 173, 185, 198, 214
BsrBI CCGCTC 2 cut(s) 163, 456
BsrFI RCCGGY 3 cut(s) 176, 245, 408
BsrGI TGTACA 1 cut(s) 390
BssAI RCCGGY 3 cut(s) 176, 245, 408
BssECI CCNNGG 5 cut(s) 194, 205, 293, 355, 356
BssMI GATC 4 cut(s) 114, 165, 190, 219
BssNI GRCGYC 1 cut(s) 24
BssSI CACGAG 2 cut(s) 325, 403
Bst2BI CACGAG 2 cut(s) 325, 403
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 368
BstACI GRCGYC 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 390
BstBAI YACGTR 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 178
BstDSI CCRYGG 2 cut(s) 194, 205
BstF5I GGATG 1 cut(s) 267
BstFNI CGCG 2 cut(s) 207, 416
BstKTI GATC 4 cut(s) 117, 168, 193, 222
BstMBI GATC 4 cut(s) 114, 165, 190, 219
BstNI CCWGG 1 cut(s) 295
BstSCI CCNGG 5 cut(s) 222, 293, 302, 354, 355
BstUI CGCG 2 cut(s) 207, 416
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 4 cut(s) 114, 165, 190, 219
BstYI RGATCY 4 cut(s) 114, 165, 190, 219
BsuRI GGCC 1 cut(s) 354
BtgI CCRYGG 2 cut(s) 194, 205
BtsCI GGATG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 178
Cfr10I RCCGGY 3 cut(s) 176, 245, 408
Cfr13I GGNCC 6 cut(s) 128, 171, 231, 248, 300, 353
Cfr42I CCGCGG 1 cut(s) 208
Cfr9I CCCGGG 1 cut(s) 355
CpoI CGGWCCG 2 cut(s) 171, 300
CseI GACGC 2 cut(s) 32, 405
Csp6I GTAC 4 cut(s) 19, 202, 391, 412
CspI CGGWCCG 2 cut(s) 171, 300
CviJI RGCY 3 cut(s) 199, 210, 354
CviKI_1 RGCY 3 cut(s) 199, 210, 354
CviQI GTAC 4 cut(s) 19, 202, 391, 412
DpnI GATC 4 cut(s) 116, 167, 192, 221
DpnII GATC 4 cut(s) 114, 165, 190, 219
EciI GGCGGA 1 cut(s) 163
Eco47I GGWCC 5 cut(s) 128, 171, 231, 248, 300
Eco72I CACGTG 1 cut(s) 477
Eco88I CYCGRG 2 cut(s) 88, 355
EcoRII CCWGG 1 cut(s) 293
FaqI GGGAC 1 cut(s) 234
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 3 cut(s) 54, 208, 457
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 3 cut(s) 54, 208, 457
GluI GCNGC 3 cut(s) 54, 208, 457
HaeIII GGCC 1 cut(s) 354
HapII CCGG 9 cut(s) 169, 177, 223, 246, 271, 303, 356, 409, 425
HgaI GACGC 2 cut(s) 32, 405
Hin1I GRCGYC 1 cut(s) 24
HinfI GANTC 3 cut(s) 59, 421, 461
HpaII CCGG 9 cut(s) 169, 177, 223, 246, 271, 303, 356, 409, 425
Hpy188I TCNGA 4 cut(s) 39, 64, 128, 235
Hpy188III TCNNGA 3 cut(s) 88, 112, 146
Hpy99I CGWCG 6 cut(s) 10, 26, 152, 350, 421, 445
HpyAV CCTTC 2 cut(s) 274, 344
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 1 cut(s) 476
HpySE526I ACGT 1 cut(s) 476
Hsp92I GRCGYC 1 cut(s) 24
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 4 cut(s) 114, 165, 190, 219
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 1 cut(s) 40
MaeII ACGT 1 cut(s) 476
MaeIII GTNAC 1 cut(s) 329
MalI GATC 4 cut(s) 116, 167, 192, 221
MbiI CCGCTC 2 cut(s) 163, 456
MboI GATC 4 cut(s) 114, 165, 190, 219
MboII GAAGA 3 cut(s) 226, 229, 271
MflI RGATCY 4 cut(s) 114, 165, 190, 219
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 2 cut(s) 308, 370
MluI ACGCGT 1 cut(s) 414
MlyI GAGTC 1 cut(s) 455
MnlI CCTC 6 cut(s) 67, 84, 148, 151, 181, 347
MreI CGCCGGCG 1 cut(s) 176
MroNI GCCGGC 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 263
MspA1I CMGCKG 2 cut(s) 53, 207
MspI CCGG 9 cut(s) 169, 177, 223, 246, 271, 303, 356, 409, 425
MspR9I CCNGG 5 cut(s) 224, 295, 304, 356, 357
MvaI CCWGG 1 cut(s) 295
MvnI CGCG 2 cut(s) 207, 416
NaeI GCCGGC 1 cut(s) 178
NciI CCSGG 4 cut(s) 224, 304, 356, 357
NdeII GATC 4 cut(s) 114, 165, 190, 219
NgoMIV GCCGGC 1 cut(s) 176
NlaIV GGNNCC 5 cut(s) 116, 130, 167, 192, 250
PaeR7I CTCGAG 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 437
PdiI GCCGGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 2 cut(s) 59, 421
PfoI TCCNGGA 2 cut(s) 222, 302
PkrI GCNGC 3 cut(s) 55, 209, 458
PleI GAGTC 1 cut(s) 455
PmaCI CACGTG 1 cut(s) 477
PmlI CACGTG 1 cut(s) 477
PpsI GAGTC 1 cut(s) 455
Ppu21I YACGTR 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 293
PspCI CACGTG 1 cut(s) 477
PspGI CCWGG 1 cut(s) 293
PspN4I GGNNCC 5 cut(s) 116, 130, 167, 192, 250
PspPI GGNCC 6 cut(s) 128, 171, 231, 248, 300, 353
PsuI RGATCY 4 cut(s) 114, 165, 190, 219
RsaI GTAC 4 cut(s) 20, 203, 392, 413
RsaNI GTAC 4 cut(s) 19, 202, 391, 412
Rsr2I CGGWCCG 2 cut(s) 171, 300
RsrII CGGWCCG 2 cut(s) 171, 300
SacII CCGCGG 1 cut(s) 208
SatI GCNGC 3 cut(s) 54, 208, 457
Sau3AI GATC 4 cut(s) 114, 165, 190, 219
Sau96I GGNCC 6 cut(s) 128, 171, 231, 248, 300, 353
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 5 cut(s) 224, 295, 304, 356, 357
SduI GDGCHC 1 cut(s) 87
SetI ASST 3 cut(s) 47, 266, 479
Sfr274I CTCGAG 1 cut(s) 88
Sfr303I CCGCGG 1 cut(s) 208
SgrAI CRCCGGYG 1 cut(s) 176
SgrBI CCGCGG 1 cut(s) 208
SinI GGWCC 5 cut(s) 128, 171, 231, 248, 300
SlaI CTCGAG 1 cut(s) 88
SmaI CCCGGG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 2 cut(s) 308, 370
StyD4I CCNGG 5 cut(s) 222, 293, 302, 354, 355
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 1 cut(s) 479
TaqI TCGA 5 cut(s) 8, 89, 345, 419, 443
TasI AATT 2 cut(s) 308, 370
TatI WGTACW 1 cut(s) 390
TauI GCSGC 2 cut(s) 210, 459
TfiI GAWTC 2 cut(s) 59, 421
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 256
TspGWI ACGGA 1 cut(s) 183
TspMI CCCGGG 1 cut(s) 355
VpaK11BI GGWCC 5 cut(s) 128, 171, 231, 248, 300
XapI RAATTY 1 cut(s) 308
XhoI CTCGAG 1 cut(s) 88
XmaI CCCGGG 1 cut(s) 355
XmnI GAANNNNTTC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.