Rorug02G0552000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017084
Physical Location & Seq
Reverse (-)
67930880 .. 67936765
5886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0552000.1

Sequence Viewer

Length: 1170 bp
ATGAAGGTTTTTGTCAAGACTTTGAAAGGCACCAACTTCGAGATCGAAGTGGAACCCCAGCAGTTGGTTGCGGATGTCAAGCAAATTATAGAGACGGCACAGGGTGCAGATGTGTACCCTGCCTCAAAACAGATGCTTATTCACCAGGGGAAAGTTCTTAAGGACGCCACGACTCTAGAAGAAAATCAAGTTGCTGAAAACAGCTTTATTGTGATAATGTTGAGCAAGGCTTCACCAAGTGGAAGCTCCAGTACGCAAGGTGCCCCCAAAAGTCAGGCTCAACCTGCTAGTACTCCTAGCACGACAACAACACCAGCAGCAGCTCCGGCTCCAGCTCCAGCACCTGCCCCAATTGTGGCACAGTCACAACCTGTCGTTGAAACTGCTGCTGTTGTAGCTCCCACTGATTCTTCAGTAACTGATGTGTATGGGCAAGCTGCATCAAATCTTGTTGCAGGAAATAATTTAGAAGTTATCGTTCAACAGATTCTAGATATGGGTGGAGGAAGTTGGGATAGGGATACCGTTCTTCGTGCTTTACGTGCTGCATTTAACAACCCTGAAAGGGCTGTTGAATATCTTTATTCCGGAATTCCCGAACAAGCTGAAGTACCTCCAGCTGCCCAAGTTCCTGTTGGTGAACAGGCAGTAAATCCTCCAGCAATAAATCCTCCCGCCCAGGCTCCACAAGCAGCAGCGCCTACTGGTGGGCCAAATGCAAACCCGCTGGATCTGTTTCCACAGGGCCTTCCTAGTGTTGGTGCAAATGCCGGGGCAGGTAATTTGGATTTTCTGCGAAACAGTCCACAGTTTCAAGCTTTGAGAACTATGGTGCAAGCAAACCCTCAAATTCTGCAGCCTATGCTCCTTGAGTTGGGGAAGCAAAATCCACATCTAATGCAGCTCATTCAAGCCCATCAAGCTGACTTCTTACGCTTGATAAATGAGCCTGTTGAGGGGGGTGGCGAAGGGAACCTTTTGGGTCAATTGGGTTCAGCGGCAATGCCACAGGCTGTGACTGTCACCCCAGAGGAGCGAGAGGCCATTGAACGTCTTGAAGCTATGGGTTTTGATCGGGCCCTAGTATTGGAGGTATACTTTGCATGCAATAAGAATGAGGAGCTGGCGGCGAACTATCTTTTGGATCACATGCATGAATTTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

41.11

Weight (kDa)

4.57

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 3.2e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 6.5e-17 Ubiquitin family
UBA PF00627 158 - 194 2e-10 UBA/TS-N domain
XPC-binding PF09280 262 - 317 2.2e-22 XPC-binding domain
UBA PF00627 345 - 380 8.5e-12 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01430 AT5G14895
fragaria_vesca FvH4_6g50470
malus_domestica MD09G1036100.v1.1 MD17G1037700.v1.1
prunus_persica Prupe.3G281600_v2.0.a1
pyrus_communis pycom111g02900 pycom17g03390
rosa_laevigata RLG00000021989
rosa_multiflora Rmu_sc0009938.1_g000004
rosa_rugosa Rorug02G0552000
rosa_samantha Rh2BG635400 Rh2DG647000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 352
Acc36I ACCTGC 3 cut(s) 292, 352, 767
AccB1I GGYRCC 2 cut(s) 29, 260
AccB7I CCANNNNNTGG 1 cut(s) 64
AccI GTMKAC 1 cut(s) 1095
AccIII TCCGGA 1 cut(s) 587
AciI CCGC 5 cut(s) 71, 675, 725, 998, 1127
AclWI GGATC 2 cut(s) 738, 1152
AcsI RAATTY 3 cut(s) 591, 849, 1157
AcuI CTGAAG 2 cut(s) 396, 627
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 2 cut(s) 104, 239
AfaI GTAC 4 cut(s) 116, 253, 292, 612
AfiI CCNNNNNNNGG 8 cut(s) 64, 355, 565, 707, 758, 874, 956, 1087
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 8 cut(s) 25, 380, 482, 575, 815, 911, 1049, 1058
AjnI CCWGG 2 cut(s) 144, 678
AjuI GAANNNNNNNTTGG 2 cut(s) 1124, 1156
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 738, 1152
AlwNI CAGNNNCTG 2 cut(s) 344, 419
Aor13HI TCCGGA 1 cut(s) 587
AoxI GGCC 4 cut(s) 710, 745, 1041, 1077
ApaI GGGCCC 1 cut(s) 1081
ApoI RAATTY 3 cut(s) 591, 849, 1157
AspLEI GCGC 1 cut(s) 700
AspS9I GGNCC 4 cut(s) 710, 745, 1077, 1078
AsuC2I CCSGG 1 cut(s) 772
AsuHPI GGTGA 4 cut(s) 134, 225, 650, 1015
BaeGI GKGCMC 2 cut(s) 265, 1081
BanI GGYRCC 2 cut(s) 29, 260
BanII GRGCYC 1 cut(s) 1081
BarI GAAGNNNNNNTAC 2 cut(s) 235, 267
BccI CCATC 1 cut(s) 924
BceAI ACGGC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 2 cut(s) 146, 680
BciVI GTATCC 1 cut(s) 514
BcnI CCSGG 1 cut(s) 772
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 6 cut(s) 176, 288, 297, 491, 753, 1082
BfmI CTRYAG 1 cut(s) 854
BfoI RGCGCY 1 cut(s) 701
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 3 cut(s) 292, 352, 767
BfuI GTATCC 1 cut(s) 514
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 3 cut(s) 146, 680, 772
BmgT120I GGNCC 4 cut(s) 710, 745, 1077, 1078
BmiI GGNNCC 7 cut(s) 31, 54, 262, 330, 684, 974, 1079
BmrFI CCNGG 3 cut(s) 146, 680, 772
BmsI GCATC 2 cut(s) 123, 449
BpmI CTGGAG 5 cut(s) 232, 315, 321, 600, 642
BpuEI CTTGAG 1 cut(s) 890
BpuMI CCSGG 1 cut(s) 772
BsaAI YACGTR 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 145, 678, 771
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 8 cut(s) 64, 355, 565, 707, 758, 874, 956, 1087
Bse1I ACTGG 2 cut(s) 249, 709
Bse3DI GCAATG 1 cut(s) 1008
BseAI TCCGGA 1 cut(s) 587
BseBI CCWGG 2 cut(s) 146, 680
BseDI CCNNGG 3 cut(s) 145, 678, 771
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 8 cut(s) 64, 355, 565, 707, 758, 874, 956, 1087
BseMI GCAATG 1 cut(s) 1008
BseNI ACTGG 2 cut(s) 249, 709
BseRI GAGGAG 2 cut(s) 1046, 1133
BseSI GKGCMC 2 cut(s) 265, 1081
BseYI CCCAGC 1 cut(s) 57
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 4 cut(s) 712, 747, 1043, 1079
BshNI GGYRCC 2 cut(s) 29, 260
BsiSI CCGG 3 cut(s) 326, 588, 771
BslI CCNNNNNNNGG 8 cut(s) 64, 355, 565, 707, 758, 874, 956, 1087
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsnI GGCC 4 cut(s) 712, 747, 1043, 1079
Bsp120I GGGCCC 1 cut(s) 1077
Bsp1286I GDGCHC 2 cut(s) 265, 1081
Bsp13I TCCGGA 1 cut(s) 587
Bsp143I GATC 4 cut(s) 42, 730, 1072, 1144
BspACI CCGC 5 cut(s) 71, 675, 725, 998, 1127
BspANI GGCC 4 cut(s) 712, 747, 1043, 1079
BspEI TCCGGA 1 cut(s) 587
BspLI GGNNCC 7 cut(s) 31, 54, 262, 330, 684, 974, 1079
BspMAI CTGCAG 1 cut(s) 858
BspMI ACCTGC 3 cut(s) 292, 352, 767
BspPI GGATC 2 cut(s) 738, 1152
BspT107I GGYRCC 2 cut(s) 29, 260
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 1008
BsrI ACTGG 2 cut(s) 249, 709
BssECI CCNNGG 3 cut(s) 145, 678, 771
BssMI GATC 4 cut(s) 42, 730, 1072, 1144
BssNAI GTATAC 1 cut(s) 1096
BssNI GRCGYC 1 cut(s) 165
Bst1107I GTATAC 1 cut(s) 1096
Bst2UI CCWGG 2 cut(s) 146, 680
Bst4CI ACNGT 5 cut(s) 363, 526, 803, 810, 1021
BstACI GRCGYC 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 2 cut(s) 104, 862
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 4 cut(s) 435, 837, 1105, 1125
BstF5I GGATG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 701
BstHHI GCGC 1 cut(s) 700
BstKTI GATC 4 cut(s) 45, 733, 1075, 1147
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 4 cut(s) 42, 730, 1072, 1144
BstMWI GCNNNNNNNGC 8 cut(s) 104, 284, 326, 395, 542, 689, 862, 920
BstNI CCWGG 2 cut(s) 146, 680
BstNSI RCATGY 2 cut(s) 1107, 1153
BstSCI CCNGG 3 cut(s) 144, 678, 770
BstSFI CTRYAG 1 cut(s) 854
BstSLI GKGCMC 2 cut(s) 265, 1081
BstX2I RGATCY 1 cut(s) 730
BstYI RGATCY 1 cut(s) 730
BstZ17I GTATAC 1 cut(s) 1096
BsuI GTATCC 1 cut(s) 514
BsuRI GGCC 4 cut(s) 712, 747, 1043, 1079
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 402
BveI ACCTGC 3 cut(s) 292, 352, 767
Cac8I GCNNGC 4 cut(s) 435, 837, 1105, 1125
CaiI CAGNNNCTG 2 cut(s) 344, 419
CfoI GCGC 1 cut(s) 700
Cfr13I GGNCC 4 cut(s) 710, 745, 1077, 1078
CseI GACGC 1 cut(s) 173
Csp6I GTAC 4 cut(s) 115, 252, 291, 611
CviAII CATG 3 cut(s) 1104, 1150, 1154
CviQI GTAC 4 cut(s) 115, 252, 291, 611
DpnI GATC 4 cut(s) 44, 732, 1074, 1146
DpnII GATC 4 cut(s) 42, 730, 1072, 1144
DraIII CACNNNGTG 2 cut(s) 104, 239
Eco24I GRGCYC 1 cut(s) 1081
Eco57I CTGAAG 2 cut(s) 396, 627
EcoO109I RGGNCCY 2 cut(s) 745, 1078
EcoRI GAATTC 1 cut(s) 591
EcoRII CCWGG 2 cut(s) 144, 678
EcoT22I ATGCAT 1 cut(s) 1155
EcoT38I GRGCYC 1 cut(s) 1081
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 3 cut(s) 1107, 1153, 1157
FalI AAGNNNNNCTT 2 cut(s) 960, 992
FatI CATG 3 cut(s) 1103, 1149, 1153
FauI CCCGC 2 cut(s) 682, 732
FblI GTMKAC 1 cut(s) 1095
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 1081
FspBI CTAG 6 cut(s) 176, 288, 297, 491, 753, 1082
GlaI GCGC 1 cut(s) 699
GsaI CCCAGC 1 cut(s) 61
GsuI CTGGAG 5 cut(s) 232, 315, 321, 600, 642
HaeII RGCGCY 1 cut(s) 701
HaeIII GGCC 4 cut(s) 712, 747, 1043, 1079
HapII CCGG 3 cut(s) 326, 588, 771
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 700
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 3 cut(s) 1107, 1153, 1157
Hin6I GCGC 1 cut(s) 698
HinP1I GCGC 1 cut(s) 698
HindIII AAGCTT 1 cut(s) 816
HinfI GANTC 3 cut(s) 172, 407, 487
HpaII CCGG 3 cut(s) 326, 588, 771
HphI GGTGA 4 cut(s) 134, 225, 650, 1015
Hpy166II GTNNAC 4 cut(s) 115, 641, 806, 1096
Hpy188III TCNNGA 7 cut(s) 16, 40, 176, 491, 588, 596, 1055
Hpy8I GTNNAC 4 cut(s) 115, 641, 806, 1096
HpyAV CCTTC 2 cut(s) 758, 962
HpyCH4III ACNGT 5 cut(s) 363, 526, 803, 810, 1021
HpyCH4IV ACGT 2 cut(s) 541, 1051
HpyF10VI GCNNNNNNNGC 8 cut(s) 104, 284, 326, 395, 542, 689, 862, 920
HpySE526I ACGT 2 cut(s) 541, 1051
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 3 cut(s) 1107, 1153, 1157
HspAI GCGC 1 cut(s) 698
Kpn2I TCCGGA 1 cut(s) 587
Kzo9I GATC 4 cut(s) 42, 730, 1072, 1144
LmnI GCTCC 9 cut(s) 251, 328, 334, 340, 403, 688, 870, 1033, 1120
LweI GCATC 2 cut(s) 123, 449
MaeI CTAG 6 cut(s) 176, 288, 297, 491, 753, 1082
MaeII ACGT 2 cut(s) 541, 1051
MaeIII GTNAC 4 cut(s) 363, 415, 1015, 1021
MalI GATC 4 cut(s) 44, 732, 1074, 1146
MboI GATC 4 cut(s) 42, 730, 1072, 1144
MboII GAAGA 3 cut(s) 191, 402, 521
MfeI CAATTG 2 cut(s) 351, 986
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 2 cut(s) 265, 1081
MluCI AATT 8 cut(s) 84, 351, 463, 591, 781, 849, 986, 1157
MlyI GAGTC 1 cut(s) 166
Mph1103I ATGCAT 1 cut(s) 1155
MroI TCCGGA 1 cut(s) 587
MseI TTAA 2 cut(s) 159, 552
MslI CAYNNNNRTG 1 cut(s) 1152
MspA1I CMGCKG 3 cut(s) 620, 727, 998
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 3 cut(s) 326, 588, 771
MspR9I CCNGG 3 cut(s) 146, 680, 772
MunI CAATTG 2 cut(s) 351, 986
MvaI CCWGG 2 cut(s) 146, 680
MwoI GCNNNNNNNGC 8 cut(s) 104, 284, 326, 395, 542, 689, 862, 920
NciI CCSGG 1 cut(s) 772
NdeII GATC 4 cut(s) 42, 730, 1072, 1144
NlaIII CATG 3 cut(s) 1107, 1153, 1157
NlaIV GGNNCC 7 cut(s) 31, 54, 262, 330, 684, 974, 1079
NmuCI GTSAC 3 cut(s) 363, 1015, 1021
NsiI ATGCAT 1 cut(s) 1155
NspI RCATGY 2 cut(s) 1107, 1153
PaeI GCATGC 1 cut(s) 1107
PaqCI CACCTGC 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 538
PfeI GAWTC 2 cut(s) 407, 487
PflMI CCANNNNNTGG 1 cut(s) 64
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 542
Psp6I CCWGG 2 cut(s) 144, 678
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 2 cut(s) 144, 678
PspN4I GGNNCC 7 cut(s) 31, 54, 262, 330, 684, 974, 1079
PspOMI GGGCCC 1 cut(s) 1077
PspPI GGNCC 4 cut(s) 710, 745, 1077, 1078
PstI CTGCAG 1 cut(s) 858
PstNI CAGNNNCTG 2 cut(s) 344, 419
PsuI RGATCY 1 cut(s) 730
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 4 cut(s) 116, 253, 292, 612
RsaNI GTAC 4 cut(s) 115, 252, 291, 611
RseI CAYNNNNRTG 1 cut(s) 1152
SaqAI TTAA 2 cut(s) 159, 552
Sau3AI GATC 4 cut(s) 42, 730, 1072, 1144
Sau96I GGNCC 4 cut(s) 710, 745, 1077, 1078
ScaI AGTACT 1 cut(s) 292
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 3 cut(s) 146, 680, 772
SduI GDGCHC 2 cut(s) 265, 1081
SfaNI GCATC 2 cut(s) 123, 449
SfcI CTRYAG 1 cut(s) 854
SmiMI CAYNNNNRTG 1 cut(s) 1152
SmlI CTYRAG 2 cut(s) 158, 869
SmoI CTYRAG 2 cut(s) 158, 869
SphI GCATGC 1 cut(s) 1107
Sse9I AATT 8 cut(s) 84, 351, 463, 591, 781, 849, 986, 1157
SsiI CCGC 5 cut(s) 71, 675, 725, 998, 1127
SspMI CTAG 6 cut(s) 176, 288, 297, 491, 753, 1082
StyD4I CCNGG 3 cut(s) 144, 678, 770
TaaI ACNGT 5 cut(s) 363, 526, 803, 810, 1021
TaiI ACGT 2 cut(s) 544, 1054
TaqI TCGA 2 cut(s) 39, 45
TasI AATT 8 cut(s) 84, 351, 463, 591, 781, 849, 986, 1157
TatI WGTACW 1 cut(s) 290
TauI GCSGC 2 cut(s) 1001, 1130
TfiI GAWTC 2 cut(s) 407, 487
Tru1I TTAA 2 cut(s) 159, 552
Tru9I TTAA 2 cut(s) 159, 552
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 3 cut(s) 363, 1015, 1021
Tsp45I GTSAC 3 cut(s) 363, 1015, 1021
TspDTI ATGAA 2 cut(s) 17, 1170
TspRI CASTG 1 cut(s) 409
Van91I CCANNNNNTGG 1 cut(s) 64
Vha464I CTTAAG 1 cut(s) 158
XapI RAATTY 3 cut(s) 591, 849, 1157
XbaI TCTAGA 2 cut(s) 175, 490
XceI RCATGY 2 cut(s) 1107, 1153
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XmiI GTMKAC 1 cut(s) 1095
XspI CTAG 6 cut(s) 176, 288, 297, 491, 753, 1082
ZrmI AGTACT 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.