Rh2BG635400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017084
Physical Location & Seq
Reverse (-)
85655426 .. 85655770
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG635400.1

Sequence Viewer

Length: 345 bp
ATGTCTCCCACAACCTCATCAATGCCGGTTTCACCCCGAAGAACCGGCATTCATGAGGGTGTCATGTTCGCCAAGAGGGGGTGCTTATATTGGATTCCCTGCTTTGGTCTCGGACCACTCCTCTCCGGAGAGATCCTGGGAGCGGATCCCAGGACACCACCACGGATCTCTGTGGTGGAACTGGGGTTGGAAGAAACTCCGAGAGTGGTCCAAACTCATAGCGAGTCCGAACTCCAAAGTGGCCGGAAAACATTCATCCGCCGGTTCAATAAGGAAAACACAAACTCAGGATGCAAGCGGTGTAGGAACAATATATATATAAGCTCAACTATGACAAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.75

Weight (kDa)

9.75

Isoelectric Point (pI)

65.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01430 AT5G14895
fragaria_vesca FvH4_6g50470
malus_domestica MD09G1036100.v1.1 MD17G1037700.v1.1
prunus_persica Prupe.3G281600_v2.0.a1
pyrus_communis pycom111g02900 pycom17g03390
rosa_laevigata RLG00000021989
rosa_multiflora Rmu_sc0009938.1_g000004
rosa_rugosa Rorug02G0552000
rosa_samantha Rh2BG635400 Rh2DG647000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 3 cut(s) 143, 259, 298
AclWI GGATC 4 cut(s) 127, 140, 153, 173
AcoI YGGCCR 1 cut(s) 241
AfiI CCNNNNNNNGG 3 cut(s) 78, 104, 142
AgsI TTSAA 1 cut(s) 268
AjnI CCWGG 2 cut(s) 135, 149
AluBI AGCT 1 cut(s) 324
AluI AGCT 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 9, 113
AlwI GGATC 4 cut(s) 127, 140, 153, 173
Aor13HI TCCGGA 1 cut(s) 125
AoxI GGCC 1 cut(s) 241
Asp700I GAANNNNTTC 1 cut(s) 251
AspS9I GGNCC 2 cut(s) 113, 208
AsuHPI GGTGA 1 cut(s) 24
AvaII GGWCC 2 cut(s) 113, 208
BamHI GGATCC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 137, 151
BcoDI GTCTC 2 cut(s) 9, 113
Bme1390I CCNGG 2 cut(s) 137, 151
Bme18I GGWCC 2 cut(s) 113, 208
BmgT120I GGNCC 2 cut(s) 113, 208
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 137, 151
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 281
BmuI ACTGGG 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 3 cut(s) 136, 149, 161
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 104, 142
Bse118I RCCGGY 3 cut(s) 25, 44, 261
Bse1I ACTGG 1 cut(s) 186
BseAI TCCGGA 1 cut(s) 125
BseBI CCWGG 2 cut(s) 137, 151
BseDI CCNNGG 3 cut(s) 136, 149, 161
BseGI GGATG 2 cut(s) 255, 296
BseLI CCNNNNNNNGG 3 cut(s) 78, 104, 142
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 110
BshFI GGCC 1 cut(s) 243
BsiSI CCGG 5 cut(s) 26, 45, 126, 244, 262
BslI CCNNNNNNNGG 3 cut(s) 78, 104, 142
BsmAI GTCTC 2 cut(s) 9, 113
BsmI GAATGC 1 cut(s) 48
BsnI GGCC 1 cut(s) 243
Bso31I GGTCTC 1 cut(s) 113
Bsp13I TCCGGA 1 cut(s) 125
Bsp143I GATC 3 cut(s) 132, 145, 165
BspACI CCGC 3 cut(s) 143, 259, 298
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 299
BspEI TCCGGA 1 cut(s) 125
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 4 cut(s) 127, 140, 153, 173
BspTNI GGTCTC 1 cut(s) 113
BsrBI CCGCTC 1 cut(s) 143
BsrFI RCCGGY 3 cut(s) 25, 44, 261
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 3 cut(s) 25, 44, 261
BssECI CCNNGG 3 cut(s) 136, 149, 161
BssMI GATC 3 cut(s) 132, 145, 165
Bst2UI CCWGG 2 cut(s) 137, 151
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 286
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 255, 296
BstKTI GATC 3 cut(s) 135, 148, 168
BstMAI GTCTC 2 cut(s) 9, 113
BstMBI GATC 3 cut(s) 132, 145, 165
BstNI CCWGG 2 cut(s) 137, 151
BstSCI CCNGG 2 cut(s) 135, 149
BstX2I RGATCY 3 cut(s) 132, 145, 165
BstYI RGATCY 3 cut(s) 132, 145, 165
BsuRI GGCC 1 cut(s) 243
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 2 cut(s) 255, 296
Cac8I GCNNGC 1 cut(s) 296
CciI TCATGA 1 cut(s) 52
Cfr10I RCCGGY 3 cut(s) 25, 44, 261
Cfr13I GGNCC 2 cut(s) 113, 208
CviAII CATG 2 cut(s) 53, 64
CviJI RGCY 2 cut(s) 243, 324
CviKI_1 RGCY 2 cut(s) 243, 324
DdeI CTNAG 1 cut(s) 286
DpnI GATC 3 cut(s) 134, 147, 167
DpnII GATC 3 cut(s) 132, 145, 165
EaeI YGGCCR 1 cut(s) 241
EciI GGCGGA 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 113, 208
EcoRII CCWGG 2 cut(s) 135, 149
FaeI CATG 2 cut(s) 56, 67
FaiI YATR 9 cut(s) 54, 65, 88, 219, 314, 316, 318, 320, 332
FatI CATG 2 cut(s) 52, 63
FokI GGATG 2 cut(s) 242, 303
HaeIII GGCC 1 cut(s) 243
HapII CCGG 5 cut(s) 26, 45, 126, 244, 262
Hin1II CATG 2 cut(s) 56, 67
HinfI GANTC 2 cut(s) 94, 224
HpaII CCGG 5 cut(s) 26, 45, 126, 244, 262
HphI GGTGA 1 cut(s) 24
Hpy188I TCNGA 3 cut(s) 113, 201, 229
Hpy188III TCNNGA 3 cut(s) 53, 126, 288
HpyCH4V TGCA 1 cut(s) 294
HpyF3I CTNAG 1 cut(s) 286
Hsp92II CATG 2 cut(s) 56, 67
Kpn2I TCCGGA 1 cut(s) 125
Kzo9I GATC 3 cut(s) 132, 145, 165
LmnI GCTCC 1 cut(s) 140
LweI GCATC 1 cut(s) 281
MalI GATC 3 cut(s) 134, 147, 167
MbiI CCGCTC 1 cut(s) 143
MboI GATC 3 cut(s) 132, 145, 165
MboII GAAGA 2 cut(s) 51, 203
MflI RGATCY 3 cut(s) 132, 145, 165
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 4 cut(s) 25, 49, 69, 131
MroI TCCGGA 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 1 cut(s) 343
MslI CAYNNNNRTG 1 cut(s) 57
MspI CCGG 5 cut(s) 26, 45, 126, 244, 262
MspR9I CCNGG 2 cut(s) 137, 151
Mva1269I GAATGC 1 cut(s) 48
MvaI CCWGG 2 cut(s) 137, 151
NdeII GATC 3 cut(s) 132, 145, 165
NlaIII CATG 2 cut(s) 56, 67
NlaIV GGNNCC 1 cut(s) 147
PagI TCATGA 1 cut(s) 52
PctI GAATGC 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 94
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 2 cut(s) 135, 149
PspGI CCWGG 2 cut(s) 135, 149
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 113, 208
PsuI RGATCY 3 cut(s) 132, 145, 165
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 1 cut(s) 343
Sau3AI GATC 3 cut(s) 132, 145, 165
Sau96I GGNCC 2 cut(s) 113, 208
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 137, 151
SetI ASST 2 cut(s) 17, 326
SfaNI GCATC 1 cut(s) 281
SinI GGWCC 2 cut(s) 113, 208
SmiMI CAYNNNNRTG 1 cut(s) 57
SsiI CCGC 3 cut(s) 143, 259, 298
StyD4I CCNGG 2 cut(s) 135, 149
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 343
Tru9I TTAA 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 41, 244
TspGWI ACGGA 1 cut(s) 178
VpaK11BI GGWCC 2 cut(s) 113, 208
XmnI GAANNNNTTC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.