AT5G14895

NHL repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017084
Physical Location & Seq
Forward (+)
4820830 .. 4821859
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14895.1

Sequence Viewer

Length: 516 bp
ATGGGCCTTGAATCTTTTCCGATCTCTGAAATGGACGCGACCGATGAAATGCACGAAGCCATGTTCGCGAAACGAGGTTGTTGTTTTATCCTCCCTTGTCTTGGATCATCTCAGCCATCTGGTCCTAACGGATCTGTGTGGTGGCAACGAATCAGAACCGTTGATAAATTGGAGCCTGATGAGCGGTGGTGGGTCTCTGGGTGGATGAAGATGAGGGAATGGTCTGAGATCGTAGCTGGTCCCAAATGGAAAACTTTTATCCGTCGCTTTGGACGTAATCACTGCTGCAACGGTGGCATTGACGGTGGTTGTAATCGGCCGGAGCATGTTAGTTTCCGGTACGATTCGTGGAGTTACTCGTTGAATTTCGACGACGGGAAACAGACGGGTCATTTCGAAGATGAGTTTCCTTACCGTGATTACTCGATGAGGTTCGCTGCGCCGTCTCTGCCGGTTTCTACTAAATGCTCCATTGATTTCGACAATGATAACCACGCGCCGTCGCTGTTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NHL

Protein Analysis

171

Amino Acids

19.78

Weight (kDa)

5.72

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01430 AT5G14895
fragaria_vesca FvH4_6g50470
malus_domestica MD09G1036100.v1.1 MD17G1037700.v1.1
prunus_persica Prupe.3G281600_v2.0.a1
pyrus_communis pycom111g02900 pycom17g03390
rosa_laevigata RLG00000021989
rosa_multiflora Rmu_sc0009938.1_g000004
rosa_rugosa Rorug02G0552000
rosa_samantha Rh2BG635400 Rh2DG647000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 184
AccII CGCG 3 cut(s) 38, 68, 497
AciI CCGC 1 cut(s) 184
AclWI GGATC 2 cut(s) 112, 139
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 1 cut(s) 364
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 2 cut(s) 11, 364
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 2 cut(s) 199, 450
AlwI GGATC 2 cut(s) 112, 139
AoxI GGCC 2 cut(s) 4, 317
ApeKI GCWGC 2 cut(s) 285, 437
ApoI RAATTY 1 cut(s) 364
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 2 cut(s) 442, 499
AspS9I GGNCC 3 cut(s) 4, 122, 239
AsuII TTCGAA 1 cut(s) 396
AvaII GGWCC 2 cut(s) 122, 239
BbvI GCAGC 2 cut(s) 272, 424
BccI CCATC 1 cut(s) 124
BceAI ACGGC 2 cut(s) 427, 484
BcoDI GTCTC 2 cut(s) 199, 450
BisI GCNGC 2 cut(s) 286, 438
BlsI GCNGC 2 cut(s) 287, 439
Bme18I GGWCC 2 cut(s) 122, 239
BmgT120I GGNCC 3 cut(s) 4, 122, 239
BmiI GGNNCC 2 cut(s) 174, 241
Bpu14I TTCGAA 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 199
BsaWI WCCGGW 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 451
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 2 cut(s) 125, 216
BseX3I CGGCCG 1 cut(s) 317
BseXI GCAGC 2 cut(s) 272, 424
Bsh1236I CGCG 3 cut(s) 38, 68, 497
Bsh1285I CGRYCG 2 cut(s) 42, 320
BshFI GGCC 2 cut(s) 6, 319
BsiEI CGRYCG 2 cut(s) 42, 320
BsiSI CCGG 3 cut(s) 320, 337, 452
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 2 cut(s) 199, 450
BsmBI CGTCTC 1 cut(s) 450
BsmFI GGGAC 1 cut(s) 225
BsnI GGCC 2 cut(s) 6, 319
Bso31I GGTCTC 1 cut(s) 199
Bsp119I TTCGAA 1 cut(s) 396
Bsp143I GATC 4 cut(s) 21, 104, 131, 228
Bsp68I TCGCGA 1 cut(s) 68
BspACI CCGC 1 cut(s) 184
BspANI GGCC 2 cut(s) 6, 319
BspCNI CTCAG 2 cut(s) 124, 217
BspFNI CGCG 3 cut(s) 38, 68, 497
BspLI GGNNCC 2 cut(s) 174, 241
BspPI GGATC 2 cut(s) 112, 139
BspT104I TTCGAA 1 cut(s) 396
BspTNI GGTCTC 1 cut(s) 199
BsrBI CCGCTC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 451
BssMI GATC 4 cut(s) 21, 104, 131, 228
Bst4CI ACNGT 4 cut(s) 160, 293, 305, 416
BstBI TTCGAA 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 111, 225
BstF5I GGATG 1 cut(s) 210
BstFNI CGCG 3 cut(s) 38, 68, 497
BstHHI GCGC 2 cut(s) 442, 499
BstKTI GATC 4 cut(s) 24, 107, 134, 231
BstMAI GTCTC 2 cut(s) 199, 450
BstMBI GATC 4 cut(s) 21, 104, 131, 228
BstMCI CGRYCG 2 cut(s) 42, 320
BstMWI GCNNNNNNNGC 4 cut(s) 65, 181, 294, 448
BstNSI RCATGY 1 cut(s) 329
BstUI CGCG 3 cut(s) 38, 68, 497
BstV1I GCAGC 2 cut(s) 272, 424
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BstZI CGGCCG 1 cut(s) 317
BsuRI GGCC 2 cut(s) 6, 319
BtsCI GGATG 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 280
BtuMI TCGCGA 1 cut(s) 68
CfoI GCGC 2 cut(s) 442, 499
Cfr10I RCCGGY 1 cut(s) 451
Cfr13I GGNCC 3 cut(s) 4, 122, 239
CseI GACGC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 340
CviAII CATG 2 cut(s) 61, 326
CviJI RGCY 6 cut(s) 6, 59, 115, 175, 236, 319
CviKI_1 RGCY 6 cut(s) 6, 59, 115, 175, 236, 319
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 111, 225
DpnI GATC 4 cut(s) 23, 106, 133, 230
DpnII GATC 4 cut(s) 21, 104, 131, 228
EaeI YGGCCR 1 cut(s) 317
EagI CGGCCG 1 cut(s) 317
EclXI CGGCCG 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 122, 239
Eco52I CGGCCG 1 cut(s) 317
Esp3I CGTCTC 1 cut(s) 450
FaeI CATG 2 cut(s) 64, 329
FaiI YATR 2 cut(s) 62, 327
FaqI GGGAC 1 cut(s) 225
FatI CATG 2 cut(s) 60, 325
Fnu4HI GCNGC 2 cut(s) 286, 438
FokI GGATG 1 cut(s) 217
Fsp4HI GCNGC 2 cut(s) 286, 438
GlaI GCGC 2 cut(s) 441, 498
GluI GCNGC 2 cut(s) 286, 438
HaeIII GGCC 2 cut(s) 6, 319
HapII CCGG 3 cut(s) 320, 337, 452
HgaI GACGC 1 cut(s) 44
HhaI GCGC 2 cut(s) 442, 499
Hin1II CATG 2 cut(s) 64, 329
Hin6I GCGC 2 cut(s) 440, 497
HinP1I GCGC 2 cut(s) 440, 497
HinfI GANTC 3 cut(s) 11, 150, 344
HpaII CCGG 3 cut(s) 320, 337, 452
Hpy188I TCNGA 4 cut(s) 21, 28, 155, 226
Hpy188III TCNNGA 1 cut(s) 67
Hpy99I CGWCG 4 cut(s) 267, 374, 377, 505
HpyCH4III ACNGT 4 cut(s) 160, 293, 305, 416
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 2 cut(s) 52, 288
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 181, 294, 448
HpyF3I CTNAG 2 cut(s) 111, 225
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 2 cut(s) 64, 329
HspAI GCGC 2 cut(s) 440, 497
Kzo9I GATC 4 cut(s) 21, 104, 131, 228
LmnI GCTCC 3 cut(s) 172, 322, 473
LpnPI CCDG 7 cut(s) 105, 183, 189, 222, 333, 350, 465
Lsp1109I GCAGC 2 cut(s) 272, 424
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 353
MalI GATC 4 cut(s) 23, 106, 133, 230
MbiI CCGCTC 1 cut(s) 184
MboI GATC 4 cut(s) 21, 104, 131, 228
MboII GAAGA 2 cut(s) 220, 410
MflI RGATCY 1 cut(s) 131
MluCI AATT 2 cut(s) 167, 364
MnlI CCTC 4 cut(s) 68, 101, 207, 423
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 1 cut(s) 510
MspI CCGG 3 cut(s) 320, 337, 452
MvnI CGCG 3 cut(s) 38, 68, 497
MwoI GCNNNNNNNGC 4 cut(s) 65, 181, 294, 448
NdeII GATC 4 cut(s) 21, 104, 131, 228
NlaIII CATG 2 cut(s) 64, 329
NlaIV GGNNCC 2 cut(s) 174, 241
NruI TCGCGA 1 cut(s) 68
NspI RCATGY 1 cut(s) 329
NspV TTCGAA 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 3 cut(s) 11, 150, 344
PkrI GCNGC 2 cut(s) 287, 439
PspN4I GGNNCC 2 cut(s) 174, 241
PspPI GGNCC 3 cut(s) 4, 122, 239
PsuI RGATCY 1 cut(s) 131
RruI TCGCGA 1 cut(s) 68
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 2 cut(s) 286, 438
Sau3AI GATC 4 cut(s) 21, 104, 131, 228
Sau96I GGNCC 3 cut(s) 4, 122, 239
SetI ASST 4 cut(s) 79, 238, 277, 434
SfuI TTCGAA 1 cut(s) 396
SinI GGWCC 2 cut(s) 122, 239
Sse9I AATT 2 cut(s) 167, 364
SsiI CCGC 1 cut(s) 184
TaaI ACNGT 4 cut(s) 160, 293, 305, 416
TaiI ACGT 1 cut(s) 277
TaqI TCGA 4 cut(s) 369, 396, 425, 480
TaqII GACCGA 1 cut(s) 56
TasI AATT 2 cut(s) 167, 364
TfiI GAWTC 3 cut(s) 11, 150, 344
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 1 cut(s) 287
TseI GCWGC 2 cut(s) 285, 437
TspDTI ATGAA 2 cut(s) 60, 221
TspGWI ACGGA 2 cut(s) 144, 251
TspRI CASTG 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 122, 239
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.