RLG00000021989

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017084
Physical Location & Seq
Reverse (-)
79774115 .. 79774773
659 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021989

Sequence Viewer

Length: 561 bp
ATGTCTCCTACAACCTCATCAATGCCGGTTTCACCCCGAAGAACCGGCATTCATGAGGGTGTCATGTTCACCAAGAGGGGGTGCTTATATTGGATTCCCTGCTTGGTCTCAGACCACTCCACCCCGGACAGGTCTTGGGAGCGGATACGAGGGACACCACCACATATCTCCGTGGTTGGAAGAAACTCCGAGAGTGATCCAAAGTCCAAACTCATAGCGAGTCCGAAGTGGAAAACGTCATCCGCCGGTTCAATAAGGAAAACACAATTAAACTCAGGATACAAGCGGTGTGGGAACAATGAGTTCAACTATGAGCTGGCTAGTTACCCCCTCAACTTCGACGAAGGCCCGGGTCAGAGCGGTAATTTGAACGATGACTACTTGTATAGGGGCTTCCCGTCTCGATACGCAGTCATCCCGGCCCCAGGTAAGTGGTGCGACGCTGAGCTTGAGGCGGAGTCAACGGAGGAAAGAGCGTGGCAGTTGACTACGTCTGCTTGTGCTTTGTGGGGAATGCAAACCTTTGAGGCTGTTGTATATAGCTTGAGGTCTAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.82

Weight (kDa)

8.8

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01430 AT5G14895
fragaria_vesca FvH4_6g50470
malus_domestica MD09G1036100.v1.1 MD17G1037700.v1.1
prunus_persica Prupe.3G281600_v2.0.a1
pyrus_communis pycom111g02900 pycom17g03390
rosa_laevigata RLG00000021989
rosa_multiflora Rmu_sc0009938.1_g000004
rosa_rugosa Rorug02G0552000
rosa_samantha Rh2BG635400 Rh2DG647000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 142, 360
AciI CCGC 5 cut(s) 142, 243, 286, 360, 455
AclWI GGATC 1 cut(s) 191
AfiI CCNNNNNNNGG 3 cut(s) 78, 129, 425
AgsI TTSAA 3 cut(s) 252, 307, 370
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 3 cut(s) 316, 448, 543
AluI AGCT 3 cut(s) 316, 448, 543
Alw26I GTCTC 3 cut(s) 9, 112, 405
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 349
AoxI GGCC 2 cut(s) 346, 420
AspS9I GGNCC 2 cut(s) 347, 421
AsuC2I CCSGG 4 cut(s) 125, 350, 351, 419
AsuHPI GGTGA 2 cut(s) 24, 61
AvaI CYCGRG 1 cut(s) 349
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
BciT130I CCWGG 1 cut(s) 426
BciVI GTATCC 2 cut(s) 138, 272
BcnI CCSGG 4 cut(s) 125, 350, 351, 419
BcoDI GTCTC 3 cut(s) 9, 112, 405
BfaI CTAG 1 cut(s) 321
BfuI GTATCC 2 cut(s) 138, 272
BlpI GCTNAGC 1 cut(s) 444
Bme1390I CCNGG 5 cut(s) 125, 350, 351, 419, 426
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 347, 421
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 5 cut(s) 125, 350, 351, 419, 426
Bpu1102I GCTNAGC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 4 cut(s) 125, 350, 351, 419
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 4 cut(s) 123, 171, 349, 424
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 129, 425
Bse118I RCCGGY 3 cut(s) 25, 44, 245
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 4 cut(s) 123, 171, 349, 424
BseGI GGATG 2 cut(s) 239, 414
BseLI CCNNNNNNNGG 3 cut(s) 78, 129, 425
BseMII CTCAG 3 cut(s) 123, 288, 435
BshFI GGCC 2 cut(s) 348, 422
BsiHKCI CYCGRG 1 cut(s) 349
BsiSI CCGG 6 cut(s) 26, 45, 125, 246, 350, 419
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 3 cut(s) 78, 129, 425
BsmAI GTCTC 3 cut(s) 9, 112, 405
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 166
BsmI GAATGC 2 cut(s) 48, 519
BsnI GGCC 2 cut(s) 348, 422
Bso31I GGTCTC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 349
Bsp143I GATC 1 cut(s) 196
Bsp1720I GCTNAGC 1 cut(s) 444
BspACI CCGC 5 cut(s) 142, 243, 286, 360, 455
BspANI GGCC 2 cut(s) 348, 422
BspCNI CTCAG 3 cut(s) 122, 287, 436
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 423
BspPI GGATC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 112
BsrBI CCGCTC 2 cut(s) 142, 360
BsrFI RCCGGY 3 cut(s) 25, 44, 245
BssAI RCCGGY 3 cut(s) 25, 44, 245
BssECI CCNNGG 4 cut(s) 123, 171, 349, 424
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 4 cut(s) 109, 274, 444, 552
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 2 cut(s) 239, 414
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 3 cut(s) 9, 112, 405
BstMBI GATC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 5 cut(s) 123, 348, 349, 417, 424
BstXI CCANNNNNNTGG 1 cut(s) 432
BsuI GTATCC 2 cut(s) 138, 272
BsuRI GGCC 2 cut(s) 348, 422
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 2 cut(s) 239, 414
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 52
Cfr10I RCCGGY 3 cut(s) 25, 44, 245
Cfr13I GGNCC 2 cut(s) 347, 421
Cfr9I CCCGGG 1 cut(s) 349
CseI GACGC 1 cut(s) 449
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 2 cut(s) 53, 64
CviJI RGCY 8 cut(s) 316, 320, 348, 393, 422, 448, 530, 543
CviKI_1 RGCY 8 cut(s) 316, 320, 348, 393, 422, 448, 530, 543
DdeI CTNAG 4 cut(s) 109, 274, 444, 552
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EciI GGCGGA 2 cut(s) 232, 470
Eco31I GGTCTC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 424
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 2 cut(s) 56, 67
FaiI YATR 9 cut(s) 54, 65, 88, 165, 215, 312, 387, 538, 540
FaqI GGGAC 1 cut(s) 166
FatI CATG 2 cut(s) 52, 63
FokI GGATG 2 cut(s) 226, 401
FspBI CTAG 1 cut(s) 321
HaeIII GGCC 2 cut(s) 348, 422
HapII CCGG 6 cut(s) 26, 45, 125, 246, 350, 419
HgaI GACGC 1 cut(s) 449
Hin1II CATG 2 cut(s) 56, 67
HincII GTYRAC 2 cut(s) 462, 486
HindII GTYRAC 2 cut(s) 462, 486
HinfI GANTC 3 cut(s) 94, 220, 458
HpaII CCGG 6 cut(s) 26, 45, 125, 246, 350, 419
HphI GGTGA 2 cut(s) 24, 61
Hpy166II GTNNAC 3 cut(s) 69, 462, 486
Hpy188I TCNGA 4 cut(s) 112, 190, 225, 357
Hpy188III TCNNGA 3 cut(s) 53, 276, 402
Hpy8I GTNNAC 3 cut(s) 69, 462, 486
Hpy99I CGWCG 2 cut(s) 344, 443
HpyAV CCTTC 1 cut(s) 338
HpyCH4IV ACGT 2 cut(s) 236, 491
HpyCH4V TGCA 1 cut(s) 517
HpyF3I CTNAG 4 cut(s) 109, 274, 444, 552
HpySE526I ACGT 2 cut(s) 236, 491
Hsp92II CATG 2 cut(s) 56, 67
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 139
MaeI CTAG 1 cut(s) 321
MaeII ACGT 2 cut(s) 236, 491
MaeIII GTNAC 1 cut(s) 323
MalI GATC 1 cut(s) 198
MbiI CCGCTC 2 cut(s) 142, 360
MboI GATC 1 cut(s) 196
MboII GAAGA 2 cut(s) 51, 192
MluCI AATT 2 cut(s) 266, 364
MlyI GAGTC 2 cut(s) 229, 467
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 9 cut(s) 25, 49, 69, 143, 341, 445, 460, 520, 540
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 1 cut(s) 57
MspI CCGG 6 cut(s) 26, 45, 125, 246, 350, 419
MspR9I CCNGG 5 cut(s) 125, 350, 351, 419, 426
Mva1269I GAATGC 2 cut(s) 48, 519
MvaI CCWGG 1 cut(s) 426
NciI CCSGG 4 cut(s) 125, 350, 351, 419
NdeII GATC 1 cut(s) 196
NlaIII CATG 2 cut(s) 56, 67
NlaIV GGNNCC 1 cut(s) 423
PagI TCATGA 1 cut(s) 52
PctI GAATGC 2 cut(s) 48, 519
PfeI GAWTC 1 cut(s) 94
PflFI GACNNNGTC 1 cut(s) 490
PleI GAGTC 2 cut(s) 228, 466
PpsI GAGTC 2 cut(s) 228, 466
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 2 cut(s) 347, 421
PsrI GAACNNNNNNTAC 2 cut(s) 362, 394
PsyI GACNNNGTC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 1 cut(s) 269
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 347, 421
SchI GAGTC 2 cut(s) 229, 467
ScrFI CCNGG 5 cut(s) 125, 350, 351, 419, 426
SmaI CCCGGG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 2 cut(s) 449, 544
SmoI CTYRAG 2 cut(s) 449, 544
Sse9I AATT 2 cut(s) 266, 364
SsiI CCGC 5 cut(s) 142, 243, 286, 360, 455
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 5 cut(s) 123, 348, 349, 417, 424
TaiI ACGT 2 cut(s) 239, 494
TaqI TCGA 2 cut(s) 339, 403
TasI AATT 2 cut(s) 266, 364
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 41
TspGWI ACGGA 2 cut(s) 160, 479
TspMI CCCGGG 1 cut(s) 349
Tth111I GACNNNGTC 1 cut(s) 490
XmaI CCCGGG 1 cut(s) 349
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.