Prupe.3G281600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0017084
Physical Location & Seq
Reverse (-)
25670289 .. 25670771
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G281600.1

Sequence Viewer

Length: 483 bp
ATGCCGTCGAAAACCGCCGCCTACCACGCCGTTCCACCTCCAAAACCGGACCTTGCTGAATCCGATGATGTCGAGGAGTTGATGTCCGCCAACACAAGCGGGTGCTGTTTATGGATGCCCTGCTTCGGCTCCGAACAGTCCTCCATCGACCGGTCCTGGGAGCGGATCCGGAACAGCGGCGACCACGGAGATCCGTGGTGGAACCGGGGCTGGAAGAAGATCCGGGAGTGGTCCGAAGTCGTGGCGGGCCCCAAGTGGAAGACCTTCATCCGCCGCTTCAACAAGAGCACCGCCAACAAGCGCTCCTCCAAATTCCATTACGACCCCATGAGTTACTCCCTCAACTTCGACGAGGGCCCGGGGCAAAGCGGTAATTTGGACGACGATTACTTGCACAGGGATTTCTCCTGTCGGTACGCGTCCATTCCTGCCTCCGCTAAGTCGTCCATGGATTTGGGGAAGGACGGGCCCTCCTTCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.13

Weight (kDa)

6.42

Isoelectric Point (pI)

65.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01430 AT5G14895
fragaria_vesca FvH4_6g50470
malus_domestica MD09G1036100.v1.1 MD17G1037700.v1.1
prunus_persica Prupe.3G281600_v2.0.a1
pyrus_communis pycom111g02900 pycom17g03390
rosa_laevigata RLG00000021989
rosa_multiflora Rmu_sc0009938.1_g000004
rosa_rugosa Rorug02G0552000
rosa_samantha Rh2BG635400 Rh2DG647000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 163
AccII CGCG 1 cut(s) 419
AccIII TCCGGA 1 cut(s) 168
AclWI GGATC 4 cut(s) 160, 173, 185, 214
AcsI RAATTY 1 cut(s) 311
AcvI CACGTG 1 cut(s) 480
AfaI GTAC 1 cut(s) 416
AfeI AGCGCT 1 cut(s) 302
AfiI CCNNNNNNNGG 4 cut(s) 125, 150, 157, 162
AflIII ACRYGT 1 cut(s) 417
AgeI ACCGGT 1 cut(s) 150
AgsI TTSAA 1 cut(s) 280
AjnI CCWGG 1 cut(s) 155
Alw21I GWGCWC 1 cut(s) 290
AlwI GGATC 4 cut(s) 160, 173, 185, 214
Ama87I CYCGRG 1 cut(s) 358
Aor13HI TCCGGA 1 cut(s) 168
Aor51HI AGCGCT 1 cut(s) 302
AoxI GGCC 3 cut(s) 247, 355, 467
ApaI GGGCCC 3 cut(s) 251, 359, 471
ApoI RAATTY 1 cut(s) 311
AsiGI ACCGGT 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 9 cut(s) 49, 153, 231, 247, 248, 355, 356, 467, 468
AsuC2I CCSGG 4 cut(s) 206, 224, 359, 360
AvaI CYCGRG 1 cut(s) 358
AvaII GGWCC 3 cut(s) 49, 153, 231
BaeGI GKGCMC 3 cut(s) 251, 359, 471
BamHI GGATCC 1 cut(s) 165
BanII GRGCYC 3 cut(s) 251, 359, 471
BbrPI CACGTG 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 290
BccI CCATC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 4 cut(s) 206, 224, 359, 360
BfoI RGCGCY 1 cut(s) 304
BisI GCNGC 3 cut(s) 18, 178, 274
BlsI GCNGC 3 cut(s) 19, 179, 275
Bme1390I CCNGG 5 cut(s) 157, 206, 224, 359, 360
Bme18I GGWCC 3 cut(s) 49, 153, 231
BmeT110I CYCGRG 1 cut(s) 358
BmgT120I GGNCC 9 cut(s) 49, 153, 231, 247, 248, 355, 356, 467, 468
BmiI GGNNCC 7 cut(s) 130, 167, 203, 249, 250, 357, 469
BmrFI CCNGG 5 cut(s) 157, 206, 224, 359, 360
BmsI GCATC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 266
BpuMI CCSGG 4 cut(s) 206, 224, 359, 360
BsaAI YACGTR 1 cut(s) 480
BsaJI CCNNGG 7 cut(s) 156, 184, 194, 205, 358, 359, 447
BsaWI WCCGGW 3 cut(s) 46, 150, 168
BsaXI ACNNNNNCTCC 5 cut(s) 68, 98, 287, 317, 455
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 150, 157, 162
Bse118I RCCGGY 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 168
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 7 cut(s) 156, 184, 194, 205, 358, 359, 447
BseGI GGATG 2 cut(s) 120, 267
BseLI CCNNNNNNNGG 4 cut(s) 125, 150, 157, 162
BseRI GAGGAG 2 cut(s) 89, 295
BseSI GKGCMC 3 cut(s) 251, 359, 471
Bsh1236I CGCG 1 cut(s) 419
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 3 cut(s) 249, 357, 469
BshTI ACCGGT 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 358
BsiSI CCGG 6 cut(s) 47, 151, 169, 205, 223, 359
BslI CCNNNNNNNGG 4 cut(s) 125, 150, 157, 162
BsnI GGCC 3 cut(s) 249, 357, 469
BsoBI CYCGRG 1 cut(s) 358
Bsp120I GGGCCC 3 cut(s) 247, 355, 467
Bsp1286I GDGCHC 4 cut(s) 251, 290, 359, 471
Bsp13I TCCGGA 1 cut(s) 168
Bsp143I GATC 3 cut(s) 165, 190, 219
Bsp19I CCATGG 1 cut(s) 447
BspANI GGCC 3 cut(s) 249, 357, 469
BspEI TCCGGA 1 cut(s) 168
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 7 cut(s) 130, 167, 203, 249, 250, 357, 469
BspPI GGATC 4 cut(s) 160, 173, 185, 214
BsrBI CCGCTC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 7 cut(s) 156, 184, 194, 205, 358, 359, 447
BssMI GATC 3 cut(s) 165, 190, 219
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 438
BstDSI CCRYGG 3 cut(s) 184, 194, 447
BstF5I GGATG 2 cut(s) 120, 267
BstFNI CGCG 1 cut(s) 419
BstH2I RGCGCY 1 cut(s) 304
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 3 cut(s) 168, 193, 222
BstMBI GATC 3 cut(s) 165, 190, 219
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 5 cut(s) 155, 204, 222, 357, 358
BstSLI GKGCMC 3 cut(s) 251, 359, 471
BstUI CGCG 1 cut(s) 419
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 3 cut(s) 165, 190, 219
BstXI CCANNNNNNTGG 1 cut(s) 454
BstYI RGATCY 3 cut(s) 165, 190, 219
BsuRI GGCC 3 cut(s) 249, 357, 469
BtgI CCRYGG 3 cut(s) 184, 194, 447
BtsCI GGATG 2 cut(s) 120, 267
Cac8I GCNNGC 1 cut(s) 247
CfoI GCGC 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 9 cut(s) 49, 153, 231, 247, 248, 355, 356, 467, 468
Cfr9I CCCGGG 1 cut(s) 358
CseI GACGC 1 cut(s) 408
Csp6I GTAC 1 cut(s) 415
CspAI ACCGGT 1 cut(s) 150
CviAII CATG 2 cut(s) 328, 448
CviJI RGCY 5 cut(s) 129, 210, 249, 357, 469
CviKI_1 RGCY 5 cut(s) 129, 210, 249, 357, 469
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 1 cut(s) 438
DpnI GATC 3 cut(s) 167, 192, 221
DpnII GATC 3 cut(s) 165, 190, 219
EciI GGCGGA 2 cut(s) 76, 260
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 3 cut(s) 251, 359, 471
Eco47I GGWCC 3 cut(s) 49, 153, 231
Eco47III AGCGCT 1 cut(s) 302
Eco72I CACGTG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 358
EcoO109I RGGNCCY 3 cut(s) 248, 355, 468
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 447
EcoT38I GRGCYC 3 cut(s) 251, 359, 471
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 2 cut(s) 331, 451
FaiI YATR 3 cut(s) 112, 329, 449
FatI CATG 2 cut(s) 327, 447
FauI CCCGC 2 cut(s) 92, 238
Fnu4HI GCNGC 3 cut(s) 18, 178, 274
FokI GGATG 2 cut(s) 127, 254
FriOI GRGCYC 3 cut(s) 251, 359, 471
Fsp4HI GCNGC 3 cut(s) 18, 178, 274
GlaI GCGC 1 cut(s) 302
GluI GCNGC 3 cut(s) 18, 178, 274
HaeII RGCGCY 1 cut(s) 304
HaeIII GGCC 3 cut(s) 249, 357, 469
HapII CCGG 6 cut(s) 47, 151, 169, 205, 223, 359
HgaI GACGC 1 cut(s) 408
HhaI GCGC 1 cut(s) 303
Hin1II CATG 2 cut(s) 331, 451
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HinfI GANTC 1 cut(s) 59
HpaII CCGG 6 cut(s) 47, 151, 169, 205, 223, 359
Hpy188I TCNGA 3 cut(s) 64, 133, 235
Hpy188III TCNNGA 1 cut(s) 169
Hpy99I CGWCG 3 cut(s) 10, 353, 386
HpyAV CCTTC 2 cut(s) 274, 454
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 1 cut(s) 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 438
HpySE526I ACGT 1 cut(s) 479
Hsp92II CATG 2 cut(s) 331, 451
HspAI GCGC 1 cut(s) 301
Kpn2I TCCGGA 1 cut(s) 168
Kzo9I GATC 3 cut(s) 165, 190, 219
LmnI GCTCC 3 cut(s) 134, 160, 308
LweI GCATC 1 cut(s) 105
MaeII ACGT 1 cut(s) 479
MaeIII GTNAC 1 cut(s) 332
MalI GATC 3 cut(s) 167, 192, 221
MbiI CCGCTC 1 cut(s) 163
MboI GATC 3 cut(s) 165, 190, 219
MboII GAAGA 3 cut(s) 226, 229, 271
MflI RGATCY 3 cut(s) 165, 190, 219
MhlI GDGCHC 4 cut(s) 251, 290, 359, 471
MluCI AATT 2 cut(s) 311, 373
MluI ACGCGT 1 cut(s) 417
MnlI CCTC 8 cut(s) 48, 67, 151, 316, 346, 350, 442, 481
MroI TCCGGA 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 6 cut(s) 47, 151, 169, 205, 223, 359
MspR9I CCNGG 5 cut(s) 157, 206, 224, 359, 360
MvaI CCWGG 1 cut(s) 157
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 1 cut(s) 26
NciI CCSGG 4 cut(s) 206, 224, 359, 360
NcoI CCATGG 1 cut(s) 447
NdeII GATC 3 cut(s) 165, 190, 219
NlaIII CATG 2 cut(s) 331, 451
NlaIV GGNNCC 7 cut(s) 130, 167, 203, 249, 250, 357, 469
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 59
PfoI TCCNGGA 1 cut(s) 222
PinAI ACCGGT 1 cut(s) 150
PkrI GCNGC 3 cut(s) 19, 179, 275
PmaCI CACGTG 1 cut(s) 480
PmlI CACGTG 1 cut(s) 480
Ppu21I YACGTR 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 155
PspCI CACGTG 1 cut(s) 480
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 7 cut(s) 130, 167, 203, 249, 250, 357, 469
PspOMI GGGCCC 3 cut(s) 247, 355, 467
PspPI GGNCC 9 cut(s) 49, 153, 231, 247, 248, 355, 356, 467, 468
PsuI RGATCY 3 cut(s) 165, 190, 219
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SatI GCNGC 3 cut(s) 18, 178, 274
Sau3AI GATC 3 cut(s) 165, 190, 219
Sau96I GGNCC 9 cut(s) 49, 153, 231, 247, 248, 355, 356, 467, 468
ScrFI CCNGG 5 cut(s) 157, 206, 224, 359, 360
SduI GDGCHC 4 cut(s) 251, 290, 359, 471
SetI ASST 4 cut(s) 40, 54, 266, 482
SfaNI GCATC 1 cut(s) 105
SinI GGWCC 3 cut(s) 49, 153, 231
SmaI CCCGGG 1 cut(s) 360
Sse9I AATT 2 cut(s) 311, 373
StyD4I CCNGG 5 cut(s) 155, 204, 222, 357, 358
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 138
TaiI ACGT 1 cut(s) 482
TaqI TCGA 4 cut(s) 8, 72, 147, 348
TasI AATT 2 cut(s) 311, 373
TauI GCSGC 3 cut(s) 20, 180, 276
TfiI GAWTC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 256
TspGWI ACGGA 2 cut(s) 183, 201
TspMI CCCGGG 1 cut(s) 358
VpaK11BI GGWCC 3 cut(s) 49, 153, 231
XapI RAATTY 1 cut(s) 311
XmaI CCCGGG 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.