Rmu_sc0009938.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009938.1
OG0017084
Physical Location & Seq
Forward (+)
12437 .. 12778
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009938.1_g000004.1.cds

Sequence Viewer

Length: 342 bp
ctgtggtggaaccggggttggaagaaactccgagagtggtccaaactcatagcgagtccgcagtggaaaacattcatccgccggttcaataaggaaaacacaaactcaggatacaagcggggtgtgggaacaataagttccaactatgacctagcaagttactccctcaacttcgccgaaggccggaggcagagcgataatttgaacgatgactacttgtacatgggcttctcgttccgatacgcggccatcccggcgccagctgagtcgtgcgacgctgagcttgtgctagagtcaacggaggaaagagcacggcagttgactacgtttcattggtcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.31

Weight (kDa)

9.13

Isoelectric Point (pI)

62.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01430 AT5G14895
fragaria_vesca FvH4_6g50470
malus_domestica MD09G1036100.v1.1 MD17G1037700.v1.1
prunus_persica Prupe.3G281600_v2.0.a1
pyrus_communis pycom111g02900 pycom17g03390
rosa_laevigata RLG00000021989
rosa_multiflora Rmu_sc0009938.1_g000004
rosa_rugosa Rorug02G0552000
rosa_samantha Rh2BG635400 Rh2DG647000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 256
AccII CGCG 1 cut(s) 245
AciI CCGC 4 cut(s) 59, 79, 118, 245
AcoI YGGCCR 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 257
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 2 cut(s) 183, 244
AgsI TTSAA 2 cut(s) 88, 205
AluBI AGCT 2 cut(s) 263, 283
AluI AGCT 2 cut(s) 263, 283
Alw21I GWGCWC 1 cut(s) 313
AoxI GGCC 2 cut(s) 181, 246
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 2 cut(s) 14, 254
AvaII GGWCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 256
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
Bbv12I GWGCWC 1 cut(s) 313
BccI CCATC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 329
BciVI GTATCC 1 cut(s) 104
BcnI CCSGG 2 cut(s) 14, 254
BfaI CTAG 2 cut(s) 152, 290
BfoI RGCGCY 1 cut(s) 260
BfuI GTATCC 1 cut(s) 104
BglI GCCNNNNNGGC 1 cut(s) 254
BisI GCNGC 1 cut(s) 246
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 2 cut(s) 14, 254
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 11, 258
BmrFI CCNGG 2 cut(s) 14, 254
Bpu1102I GCTNAGC 1 cut(s) 279
BpuMI CCSGG 2 cut(s) 14, 254
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 244
Bse118I RCCGGY 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 2 cut(s) 75, 249
BseLI CCNNNNNNNGG 2 cut(s) 183, 244
BseMII CTCAG 3 cut(s) 120, 255, 270
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 2 cut(s) 183, 248
BshNI GGYRCC 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 4 cut(s) 13, 82, 184, 254
BslI CCNNNNNNNGG 2 cut(s) 183, 244
BsnI GGCC 2 cut(s) 183, 248
Bsp1286I GDGCHC 1 cut(s) 313
Bsp1407I TGTACA 1 cut(s) 219
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 4 cut(s) 59, 79, 118, 245
BspANI GGCC 2 cut(s) 183, 248
BspCNI CTCAG 3 cut(s) 119, 256, 271
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 2 cut(s) 11, 258
BspT107I GGYRCC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 81
BsrGI TGTACA 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 13
BssNI GRCGYC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 3 cut(s) 106, 264, 279
BstF5I GGATG 2 cut(s) 75, 249
BstFNI CGCG 1 cut(s) 245
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 12, 252
BstUI CGCG 1 cut(s) 245
BsuI GTATCC 1 cut(s) 104
BsuRI GGCC 2 cut(s) 183, 248
BtsCI GGATG 2 cut(s) 75, 249
BtsI GCAGTG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 261
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 39
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 220
CviAII CATG 1 cut(s) 223
CviJI RGCY 5 cut(s) 183, 228, 248, 263, 283
CviKI_1 RGCY 5 cut(s) 183, 228, 248, 263, 283
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 3 cut(s) 106, 264, 279
DinI GGCGCC 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 246
EciI GGCGGA 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 39
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
FaeI CATG 1 cut(s) 226
FaiI YATR 3 cut(s) 50, 147, 224
FatI CATG 1 cut(s) 222
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 2 cut(s) 62, 236
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 2 cut(s) 152, 290
GlaI GCGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 2 cut(s) 183, 248
HapII CCGG 4 cut(s) 13, 82, 184, 254
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 1 cut(s) 226
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HincII GTYRAC 2 cut(s) 297, 321
HindII GTYRAC 2 cut(s) 297, 321
HinfI GANTC 3 cut(s) 55, 266, 293
HpaII CCGG 4 cut(s) 13, 82, 184, 254
Hpy166II GTNNAC 2 cut(s) 297, 321
Hpy188I TCNGA 2 cut(s) 32, 239
Hpy188III TCNNGA 1 cut(s) 108
Hpy8I GTNNAC 2 cut(s) 297, 321
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 3 cut(s) 106, 264, 279
HpySE526I ACGT 1 cut(s) 326
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 1 cut(s) 226
HspAI GCGC 1 cut(s) 257
KasI GGCGCC 1 cut(s) 256
LpnPI CCDG 6 cut(s) 26, 93, 95, 197, 267, 273
MaeI CTAG 2 cut(s) 152, 290
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 158
MboII GAAGA 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 1 cut(s) 199
Mly113I GGCGCC 1 cut(s) 257
MlyI GAGTC 3 cut(s) 64, 275, 302
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 3 cut(s) 176, 180, 295
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 1 cut(s) 340
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 4 cut(s) 13, 82, 184, 254
MspR9I CCNGG 2 cut(s) 14, 254
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 254
NarI GGCGCC 1 cut(s) 257
NciI CCSGG 2 cut(s) 14, 254
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 2 cut(s) 11, 258
PdmI GAANNNNTTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 3 cut(s) 63, 274, 301
PluTI GGCGCC 1 cut(s) 260
PpsI GAGTC 3 cut(s) 63, 274, 301
PspN4I GGNNCC 2 cut(s) 11, 258
PspPI GGNCC 1 cut(s) 39
PsrI GAACNNNNNNTAC 2 cut(s) 197, 229
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 340
SatI GCNGC 1 cut(s) 246
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 3 cut(s) 64, 275, 302
ScrFI CCNGG 2 cut(s) 14, 254
SduI GDGCHC 1 cut(s) 313
SetI ASST 4 cut(s) 153, 265, 285, 329
SfoI GGCGCC 1 cut(s) 258
SinI GGWCC 1 cut(s) 39
Sse9I AATT 1 cut(s) 199
SsiI CCGC 4 cut(s) 59, 79, 118, 245
SspDI GGCGCC 1 cut(s) 256
SspMI CTAG 2 cut(s) 152, 290
StyD4I CCNGG 2 cut(s) 12, 252
TaiI ACGT 1 cut(s) 329
TasI AATT 1 cut(s) 199
TatI WGTACW 1 cut(s) 219
TauI GCSGC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TscAI CASTG 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 64, 320
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 2 cut(s) 152, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.