FvH4_6g50470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017084
Physical Location & Seq
Reverse (-)
37560752 .. 37562157
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50470.t1

Sequence Viewer

Length: 453 bp
ATGAATGTTTCACCCCGAATAACCGGCATTTATGATGATGTCGTGTTCGCCAAAAGGGGGTGCTTATATTGGATCCCTGGCTTGAGATCAGACCACTCCTCCCGAAACAGATCTTGGGAGCGGATCCCGAGAGACCACCACGGATGTGGATTTCCGTGGTGGAACCGGAGCTGCAAGAAACTACGAAAGTGGTCCGAACGCATAACGGGTCCGAAATGGAAGACATTCATCCGCCGGTTCAATAAGAAAAACAAAAGATCAGGATACAAGCAGTTTGGGAAGAATAAGTTCAACAACTATGACCTAGCAAGTTATTCCCTCAACTTCGACGAAGGCCCAAGGCGGAGCAGTAATTTGGACGATGAGTACTACTTCTACAGGGGCTTCTCGTCTCGATACGCGGCCATCCCGGCGCCGGCGAAGTCGTCCATGCCTTCCTTAAGCTTCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.81

Weight (kDa)

10.23

Isoelectric Point (pI)

69.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01430 AT5G14895
fragaria_vesca FvH4_6g50470
malus_domestica MD09G1036100.v1.1 MD17G1037700.v1.1
prunus_persica Prupe.3G281600_v2.0.a1
pyrus_communis pycom111g02900 pycom17g03390
rosa_laevigata RLG00000021989
rosa_multiflora Rmu_sc0009938.1_g000004
rosa_rugosa Rorug02G0552000
rosa_samantha Rh2BG635400 Rh2DG647000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 412
AccBSI CCGCTC 1 cut(s) 121
AccII CGCG 1 cut(s) 401
AciI CCGC 4 cut(s) 121, 232, 343, 401
AclWI GGATC 4 cut(s) 67, 80, 118, 131
AcoI YGGCCR 1 cut(s) 402
AcvI CACGTG 1 cut(s) 450
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 2 cut(s) 57, 415
AflII CTTAAG 1 cut(s) 439
AgsI TTSAA 2 cut(s) 241, 292
AjnI CCWGG 1 cut(s) 76
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AleI CACNNNNGTG 1 cut(s) 144
AluBI AGCT 2 cut(s) 171, 444
AluI AGCT 2 cut(s) 171, 444
Alw26I GTCTC 2 cut(s) 126, 396
AlwI GGATC 4 cut(s) 67, 80, 118, 131
Ama87I CYCGRG 1 cut(s) 127
AoxI GGCC 2 cut(s) 334, 402
ApeKI GCWGC 1 cut(s) 171
Asp700I GAANNNNTTC 2 cut(s) 224, 287
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 3 cut(s) 192, 209, 335
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 3
AvaI CYCGRG 1 cut(s) 127
AvaII GGWCC 2 cut(s) 192, 209
BamHI GGATCC 2 cut(s) 72, 123
BanI GGYRCC 1 cut(s) 412
BbrPI CACGTG 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 413
BciT130I CCWGG 1 cut(s) 78
BciVI GTATCC 1 cut(s) 257
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 2 cut(s) 126, 396
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 376
BfoI RGCGCY 1 cut(s) 416
BfrI CTTAAG 1 cut(s) 439
BfuI GTATCC 1 cut(s) 257
BglI GCCNNNNNGGC 1 cut(s) 410
BglII AGATCT 1 cut(s) 110
BisI GCNGC 2 cut(s) 172, 402
BlsI GCNGC 2 cut(s) 173, 403
BmcAI AGTACT 1 cut(s) 368
Bme1390I CCNGG 2 cut(s) 78, 410
Bme18I GGWCC 2 cut(s) 192, 209
BmeT110I CYCGRG 1 cut(s) 127
BmgT120I GGNCC 3 cut(s) 192, 209, 335
BmiI GGNNCC 5 cut(s) 74, 125, 164, 210, 414
BmrFI CCNGG 2 cut(s) 78, 410
BpiI GAAGAC 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 103
BpuMI CCSGG 1 cut(s) 410
BsaAI YACGTR 1 cut(s) 450
BsaHI GRCGYC 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 76, 139, 155, 338
BsaWI WCCGGW 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 415
Bse118I RCCGGY 3 cut(s) 23, 234, 415
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 4 cut(s) 76, 139, 155, 338
BseGI GGATG 3 cut(s) 149, 228, 405
BseLI CCNNNNNNNGG 2 cut(s) 57, 415
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 158
Bsh1236I CGCG 1 cut(s) 401
BshFI GGCC 2 cut(s) 336, 404
BshNI GGYRCC 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 5 cut(s) 24, 166, 235, 410, 416
BslI CCNNNNNNNGG 2 cut(s) 57, 415
BsmAI GTCTC 2 cut(s) 126, 396
BsmBI CGTCTC 1 cut(s) 396
BsnI GGCC 2 cut(s) 336, 404
Bso31I GGTCTC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 127
Bsp143I GATC 5 cut(s) 72, 86, 110, 123, 257
BspACI CCGC 4 cut(s) 121, 232, 343, 401
BspANI GGCC 2 cut(s) 336, 404
BspFNI CGCG 1 cut(s) 401
BspLI GGNNCC 5 cut(s) 74, 125, 164, 210, 414
BspPI GGATC 4 cut(s) 67, 80, 118, 131
BspT107I GGYRCC 1 cut(s) 412
BspTI CTTAAG 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 126
BsrBI CCGCTC 1 cut(s) 121
BsrFI RCCGGY 3 cut(s) 23, 234, 415
BssAI RCCGGY 3 cut(s) 23, 234, 415
BssECI CCNNGG 4 cut(s) 76, 139, 155, 338
BssMI GATC 5 cut(s) 72, 86, 110, 123, 257
BssNI GRCGYC 1 cut(s) 413
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 413
BstAFI CTTAAG 1 cut(s) 439
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 417
BstDSI CCRYGG 2 cut(s) 139, 155
BstF5I GGATG 3 cut(s) 149, 228, 405
BstFNI CGCG 1 cut(s) 401
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 5 cut(s) 75, 89, 113, 126, 260
BstMAI GTCTC 2 cut(s) 126, 396
BstMBI GATC 5 cut(s) 72, 86, 110, 123, 257
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 2 cut(s) 76, 408
BstSFI CTRYAG 1 cut(s) 376
BstUI CGCG 1 cut(s) 401
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 3 cut(s) 72, 110, 123
BstXI CCANNNNNNTGG 1 cut(s) 146
BstYI RGATCY 3 cut(s) 72, 110, 123
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 336, 404
BtgI CCRYGG 2 cut(s) 139, 155
BtsCI GGATG 3 cut(s) 149, 228, 405
Cac8I GCNNGC 1 cut(s) 417
CfoI GCGC 1 cut(s) 415
Cfr10I RCCGGY 3 cut(s) 23, 234, 415
Cfr13I GGNCC 3 cut(s) 192, 209, 335
Csp6I GTAC 1 cut(s) 367
CviAII CATG 1 cut(s) 430
CviJI RGCY 6 cut(s) 81, 171, 336, 384, 404, 444
CviKI_1 RGCY 6 cut(s) 81, 171, 336, 384, 404, 444
CviQI GTAC 1 cut(s) 367
DinI GGCGCC 1 cut(s) 414
DpnI GATC 5 cut(s) 74, 88, 112, 125, 259
DpnII GATC 5 cut(s) 72, 86, 110, 123, 257
EaeI YGGCCR 1 cut(s) 402
EciI GGCGGA 2 cut(s) 221, 358
Eco130I CCWWGG 1 cut(s) 338
Eco31I GGTCTC 1 cut(s) 126
Eco47I GGWCC 2 cut(s) 192, 209
Eco72I CACGTG 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 338
EgeI GGCGCC 1 cut(s) 414
EheI GGCGCC 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 338
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 1 cut(s) 433
FaiI YATR 5 cut(s) 33, 67, 203, 300, 431
FatI CATG 1 cut(s) 429
Fnu4HI GCNGC 2 cut(s) 172, 402
FokI GGATG 3 cut(s) 156, 215, 392
Fsp4HI GCNGC 2 cut(s) 172, 402
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 414
GluI GCNGC 2 cut(s) 172, 402
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 2 cut(s) 336, 404
HapII CCGG 5 cut(s) 24, 166, 235, 410, 416
HhaI GCGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 1 cut(s) 433
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HindIII AAGCTT 1 cut(s) 442
HpaII CCGG 5 cut(s) 24, 166, 235, 410, 416
HphI GGTGA 1 cut(s) 3
Hpy188I TCNGA 3 cut(s) 91, 196, 213
Hpy188III TCNNGA 4 cut(s) 102, 127, 261, 393
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 2 cut(s) 326, 444
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpySE526I ACGT 1 cut(s) 449
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 1 cut(s) 433
HspAI GCGC 1 cut(s) 413
KasI GGCGCC 1 cut(s) 412
KroI GCCGGC 1 cut(s) 415
KroNI GCCGGC 1 cut(s) 417
Kzo9I GATC 5 cut(s) 72, 86, 110, 123, 257
LmnI GCTCC 3 cut(s) 118, 168, 345
LpnPI CCDG 9 cut(s) 37, 63, 90, 179, 246, 248, 364, 423, 429
Lsp1109I GCAGC 1 cut(s) 158
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 449
MalI GATC 5 cut(s) 74, 88, 112, 125, 259
MbiI CCGCTC 1 cut(s) 121
MboI GATC 5 cut(s) 72, 86, 110, 123, 257
MboII GAAGA 2 cut(s) 232, 292
MflI RGATCY 3 cut(s) 72, 110, 123
MluCI AATT 1 cut(s) 352
Mly113I GGCGCC 1 cut(s) 413
MnlI CCTC 2 cut(s) 109, 329
MreI CGCCGGCG 1 cut(s) 415
MroNI GCCGGC 1 cut(s) 415
MroXI GAANNNNTTC 2 cut(s) 224, 287
MseI TTAA 1 cut(s) 440
MslI CAYNNNNRTG 1 cut(s) 144
MspCI CTTAAG 1 cut(s) 439
MspI CCGG 5 cut(s) 24, 166, 235, 410, 416
MspR9I CCNGG 2 cut(s) 78, 410
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 410
NaeI GCCGGC 1 cut(s) 417
NarI GGCGCC 1 cut(s) 413
NciI CCSGG 1 cut(s) 410
NdeII GATC 5 cut(s) 72, 86, 110, 123, 257
NgoMIV GCCGGC 1 cut(s) 415
NlaIII CATG 1 cut(s) 433
NlaIV GGNNCC 5 cut(s) 74, 125, 164, 210, 414
OliI CACNNNNGTG 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 417
PdmI GAANNNNTTC 2 cut(s) 224, 287
PkrI GCNGC 2 cut(s) 173, 403
PluTI GGCGCC 1 cut(s) 416
PmaCI CACGTG 1 cut(s) 450
PmlI CACGTG 1 cut(s) 450
Ppu21I YACGTR 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 76
PspCI CACGTG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 5 cut(s) 74, 125, 164, 210, 414
PspPI GGNCC 3 cut(s) 192, 209, 335
PsuI RGATCY 3 cut(s) 72, 110, 123
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 2 cut(s) 172, 402
Sau3AI GATC 5 cut(s) 72, 86, 110, 123, 257
Sau96I GGNCC 3 cut(s) 192, 209, 335
ScaI AGTACT 1 cut(s) 368
ScrFI CCNGG 2 cut(s) 78, 410
SetI ASST 4 cut(s) 173, 306, 446, 452
SfcI CTRYAG 1 cut(s) 376
SfoI GGCGCC 1 cut(s) 414
SgrAI CRCCGGYG 1 cut(s) 415
SinI GGWCC 2 cut(s) 192, 209
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 82, 439
SmoI CTYRAG 2 cut(s) 82, 439
Sse9I AATT 1 cut(s) 352
SsiI CCGC 4 cut(s) 121, 232, 343, 401
SspDI GGCGCC 1 cut(s) 412
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 76, 408
StyI CCWWGG 1 cut(s) 338
TaiI ACGT 1 cut(s) 452
TaqI TCGA 2 cut(s) 327, 394
TasI AATT 1 cut(s) 352
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 404
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TseI GCWGC 1 cut(s) 171
TspDTI ATGAA 2 cut(s) 17, 217
TspGWI ACGGA 2 cut(s) 144, 156
Vha464I CTTAAG 1 cut(s) 439
VpaK11BI GGWCC 2 cut(s) 192, 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmnI GAANNNNTTC 2 cut(s) 224, 287
XspI CTAG 1 cut(s) 305
ZrmI AGTACT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.