Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01770 AT3G01770 AT3G27260 AT3G27260 AT3G27260 AT3G27260 AT5G14270 AT5G14270 AT5G14270 |
| fragaria_vesca | FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 |
| malus_domestica | MD09G1016100.v1.1 MD17G1016600.v1.1 |
| prunus_persica | Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 |
| pyrus_communis | pycom111g01310 pycom17g01330 |
| rosa_chinensis | RchiOBHm_Chr2g0174631 |
| rosa_laevigata | RLG00000022278 |
| rosa_multiflora | Rmu_sc0003649.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00077990 |
| rosa_rugosa | Rorug02G0578200 Rorug02G0578300 Rorug02G0578400 Rorug02G0578500 |
| rosa_samantha | Rh2AG659500 Rh2BG670300 Rh2CG633600 Rh2DG684000 |
| rosa_wichuraiana | Rw2G054010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 36, 615 |
| AarI | CACCTGC | 1 cut(s) | 271 |
| AatII | GACGTC | 1 cut(s) | 465 |
| Acc36I | ACCTGC | 1 cut(s) | 271 |
| AccIII | TCCGGA | 1 cut(s) | 704 |
| AciI | CCGC | 5 cut(s) | 63, 598, 832, 1009, 1373 |
| AclWI | GGATC | 2 cut(s) | 1020, 1820 |
| AcsI | RAATTY | 3 cut(s) | 890, 910, 1105 |
| AcuI | CTGAAG | 2 cut(s) | 549, 1536 |
| AcyI | GRCGYC | 1 cut(s) | 462 |
| AfaI | GTAC | 2 cut(s) | 259, 900 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1009, 1829 |
| AgsI | TTSAA | 8 cut(s) | 558, 671, 1056, 1231, 1360, 1387, 1571, 1619 |
| AhlI | ACTAGT | 1 cut(s) | 254 |
| AjnI | CCWGG | 3 cut(s) | 25, 319, 1099 |
| Alw21I | GWGCWC | 3 cut(s) | 336, 1176, 1309 |
| Alw26I | GTCTC | 3 cut(s) | 282, 1419, 1427 |
| AlwI | GGATC | 2 cut(s) | 1020, 1820 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 190 |
| Ama87I | CYCGRG | 1 cut(s) | 115 |
| Aor13HI | TCCGGA | 1 cut(s) | 704 |
| AoxI | GGCC | 2 cut(s) | 316, 1097 |
| ApeKI | GCWGC | 5 cut(s) | 427, 430, 1349, 1580, 1762 |
| ApoI | RAATTY | 3 cut(s) | 890, 910, 1105 |
| AspS9I | GGNCC | 7 cut(s) | 204, 226, 317, 879, 1097, 1648, 1678 |
| AsuC2I | CCSGG | 3 cut(s) | 60, 1585, 1830 |
| AsuHPI | GGTGA | 4 cut(s) | 358, 484, 1073, 1862 |
| AvaI | CYCGRG | 1 cut(s) | 115 |
| AvaII | GGWCC | 5 cut(s) | 204, 226, 879, 1648, 1678 |
| Bbv12I | GWGCWC | 3 cut(s) | 336, 1176, 1309 |
| BbvCI | CCTCAGC | 1 cut(s) | 1536 |
| BbvI | GCAGC | 5 cut(s) | 439, 442, 1336, 1592, 1774 |
| BccI | CCATC | 7 cut(s) | 672, 1121, 1231, 1277, 1289, 1597, 1712 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1796, 1830 |
| BciT130I | CCWGG | 3 cut(s) | 27, 321, 1101 |
| BcnI | CCSGG | 3 cut(s) | 60, 1585, 1830 |
| BcoDI | GTCTC | 3 cut(s) | 282, 1419, 1427 |
| BcuI | ACTAGT | 1 cut(s) | 254 |
| BfaI | CTAG | 3 cut(s) | 255, 1652, 1757 |
| BfuAI | ACCTGC | 1 cut(s) | 271 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1589 |
| BglII | AGATCT | 1 cut(s) | 944 |
| BisI | GCNGC | 6 cut(s) | 64, 428, 431, 1350, 1581, 1763 |
| BlpI | GCTNAGC | 1 cut(s) | 828 |
| BlsI | GCNGC | 6 cut(s) | 65, 429, 432, 1351, 1582, 1764 |
| Bme1390I | CCNGG | 6 cut(s) | 27, 60, 321, 1101, 1585, 1830 |
| Bme18I | GGWCC | 5 cut(s) | 204, 226, 879, 1648, 1678 |
| BmeT110I | CYCGRG | 1 cut(s) | 115 |
| BmgT120I | GGNCC | 7 cut(s) | 204, 226, 317, 879, 1097, 1648, 1678 |
| BmiI | GGNNCC | 3 cut(s) | 227, 709, 880 |
| BmrFI | CCNGG | 6 cut(s) | 27, 60, 321, 1101, 1585, 1830 |
| BmsI | GCATC | 4 cut(s) | 296, 982, 1234, 1256 |
| BpmI | CTGGAG | 2 cut(s) | 969, 1314 |
| Bpu10I | CCTNAGC | 2 cut(s) | 765, 1536 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 828 |
| BpuEI | CTTGAG | 3 cut(s) | 1377, 1619, 1628 |
| BpuMI | CCSGG | 3 cut(s) | 60, 1585, 1830 |
| Bsa29I | ATCGAT | 1 cut(s) | 1366 |
| BsaAI | YACGTR | 1 cut(s) | 552 |
| BsaBI | GATNNNNATC | 3 cut(s) | 36, 971, 1287 |
| BsaHI | GRCGYC | 1 cut(s) | 462 |
| BsaI | GGTCTC | 1 cut(s) | 1419 |
| BsaJI | CCNNGG | 5 cut(s) | 25, 90, 319, 933, 1506 |
| BsaWI | WCCGGW | 1 cut(s) | 704 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1009, 1829 |
| Bse1I | ACTGG | 6 cut(s) | 319, 362, 1003, 1464, 1566, 1681 |
| Bse3DI | GCAATG | 4 cut(s) | 401, 607, 1592, 1840 |
| Bse8I | GATNNNNATC | 3 cut(s) | 36, 971, 1287 |
| BseAI | TCCGGA | 1 cut(s) | 704 |
| BseBI | CCWGG | 3 cut(s) | 27, 321, 1101 |
| BseCI | ATCGAT | 1 cut(s) | 1366 |
| BseDI | CCNNGG | 5 cut(s) | 25, 90, 319, 933, 1506 |
| BseGI | GGATG | 7 cut(s) | 100, 393, 505, 701, 1156, 1247, 1798 |
| BseJI | GATNNNNATC | 3 cut(s) | 36, 971, 1287 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1009, 1829 |
| BseMI | GCAATG | 4 cut(s) | 401, 607, 1592, 1840 |
| BseMII | CTCAG | 6 cut(s) | 670, 756, 908, 997, 1527, 1701 |
| BseNI | ACTGG | 6 cut(s) | 319, 362, 1003, 1464, 1566, 1681 |
| BseRI | GAGGAG | 1 cut(s) | 1802 |
| BseXI | GCAGC | 5 cut(s) | 439, 442, 1336, 1592, 1774 |
| BseYI | CCCAGC | 1 cut(s) | 1765 |
| BshFI | GGCC | 2 cut(s) | 318, 1099 |
| BshVI | ATCGAT | 1 cut(s) | 1366 |
| BsiHKAI | GWGCWC | 3 cut(s) | 336, 1176, 1309 |
| BsiHKCI | CYCGRG | 1 cut(s) | 115 |
| BsiSI | CCGG | 5 cut(s) | 60, 546, 705, 1585, 1830 |
| BslFI | GGGAC | 2 cut(s) | 98, 239 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1009, 1829 |
| BsmAI | GTCTC | 3 cut(s) | 282, 1419, 1427 |
| BsmFI | GGGAC | 2 cut(s) | 98, 239 |
| BsmI | GAATGC | 1 cut(s) | 799 |
| BsnI | GGCC | 2 cut(s) | 318, 1099 |
| Bso31I | GGTCTC | 1 cut(s) | 1419 |
| BsoBI | CYCGRG | 1 cut(s) | 115 |
| Bsp1286I | GDGCHC | 3 cut(s) | 336, 1176, 1309 |
| Bsp13I | TCCGGA | 1 cut(s) | 704 |
| Bsp1407I | TGTACA | 1 cut(s) | 898 |
| Bsp143I | GATC | 5 cut(s) | 922, 944, 979, 1012, 1825 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 828 |
| BspACI | CCGC | 5 cut(s) | 63, 598, 832, 1009, 1373 |
| BspANI | GGCC | 2 cut(s) | 318, 1099 |
| BspCNI | CTCAG | 6 cut(s) | 669, 757, 909, 996, 1528, 1702 |
| BspDI | ATCGAT | 1 cut(s) | 1366 |
| BspEI | TCCGGA | 1 cut(s) | 704 |
| BspHI | TCATGA | 1 cut(s) | 988 |
| BspLI | GGNNCC | 3 cut(s) | 227, 709, 880 |
| BspMI | ACCTGC | 1 cut(s) | 271 |
| BspPI | GGATC | 2 cut(s) | 1020, 1820 |
| BspTNI | GGTCTC | 1 cut(s) | 1419 |
| BsrDI | GCAATG | 4 cut(s) | 401, 607, 1592, 1840 |
| BsrGI | TGTACA | 1 cut(s) | 898 |
| BsrI | ACTGG | 6 cut(s) | 319, 362, 1003, 1464, 1566, 1681 |
| BssECI | CCNNGG | 5 cut(s) | 25, 90, 319, 933, 1506 |
| BssMI | GATC | 5 cut(s) | 922, 944, 979, 1012, 1825 |
| BssNI | GRCGYC | 1 cut(s) | 462 |
| BssT1I | CCWWGG | 3 cut(s) | 90, 933, 1506 |
| Bst2UI | CCWGG | 3 cut(s) | 27, 321, 1101 |
| Bst6I | CTCTTC | 4 cut(s) | 209, 776, 933, 1839 |
| BstACI | GRCGYC | 1 cut(s) | 462 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1594 |
| BstAUI | TGTACA | 1 cut(s) | 898 |
| BstBAI | YACGTR | 1 cut(s) | 552 |
| BstC8I | GCNNGC | 3 cut(s) | 825, 1590, 1815 |
| BstF5I | GGATG | 7 cut(s) | 100, 393, 505, 701, 1156, 1247, 1798 |
| BstKTI | GATC | 5 cut(s) | 925, 947, 982, 1015, 1828 |
| BstMAI | GTCTC | 3 cut(s) | 282, 1419, 1427 |
| BstMBI | GATC | 5 cut(s) | 922, 944, 979, 1012, 1825 |
| BstNI | CCWGG | 3 cut(s) | 27, 321, 1101 |
| BstNSI | RCATGY | 1 cut(s) | 1813 |
| BstSCI | CCNGG | 6 cut(s) | 25, 58, 319, 1099, 1583, 1828 |
| BstV1I | GCAGC | 5 cut(s) | 439, 442, 1336, 1592, 1774 |
| BstX2I | RGATCY | 3 cut(s) | 944, 1012, 1825 |
| BstYI | RGATCY | 3 cut(s) | 944, 1012, 1825 |
| Bsu15I | ATCGAT | 1 cut(s) | 1366 |
| BsuRI | GGCC | 2 cut(s) | 318, 1099 |
| BsuTUI | ATCGAT | 1 cut(s) | 1366 |
| BtsCI | GGATG | 7 cut(s) | 100, 393, 505, 701, 1156, 1247, 1798 |
| BtsI | GCAGTG | 1 cut(s) | 1436 |
| BtsIMutI | CAGTG | 2 cut(s) | 1120, 1436 |
| BveI | ACCTGC | 1 cut(s) | 271 |
| Cac8I | GCNNGC | 3 cut(s) | 825, 1590, 1815 |
| CaiI | CAGNNNCTG | 1 cut(s) | 190 |
| CciI | TCATGA | 1 cut(s) | 988 |
| Cfr13I | GGNCC | 7 cut(s) | 204, 226, 317, 879, 1097, 1648, 1678 |
| ClaI | ATCGAT | 1 cut(s) | 1366 |
| CseI | GACGC | 1 cut(s) | 1123 |
| Csp6I | GTAC | 2 cut(s) | 258, 899 |
| CviAII | CATG | 4 cut(s) | 989, 1088, 1784, 1810 |
| CviQI | GTAC | 2 cut(s) | 258, 899 |
| DpnI | GATC | 5 cut(s) | 924, 946, 981, 1014, 1827 |
| DpnII | GATC | 5 cut(s) | 922, 944, 979, 1012, 1825 |
| Eam1104I | CTCTTC | 4 cut(s) | 209, 776, 933, 1839 |
| EarI | CTCTTC | 4 cut(s) | 209, 776, 933, 1839 |
| Eco130I | CCWWGG | 3 cut(s) | 90, 933, 1506 |
| Eco31I | GGTCTC | 1 cut(s) | 1419 |
| Eco47I | GGWCC | 5 cut(s) | 204, 226, 879, 1648, 1678 |
| Eco57I | CTGAAG | 2 cut(s) | 549, 1536 |
| Eco88I | CYCGRG | 1 cut(s) | 115 |
| EcoO109I | RGGNCCY | 3 cut(s) | 226, 879, 1648 |
| EcoRI | GAATTC | 1 cut(s) | 890 |
| EcoRII | CCWGG | 3 cut(s) | 25, 319, 1099 |
| EcoT14I | CCWWGG | 3 cut(s) | 90, 933, 1506 |
| EcoT22I | ATGCAT | 1 cut(s) | 1249 |
| ErhI | CCWWGG | 3 cut(s) | 90, 933, 1506 |
| FaeI | CATG | 4 cut(s) | 992, 1091, 1787, 1813 |
| FaqI | GGGAC | 2 cut(s) | 98, 239 |
| FatI | CATG | 4 cut(s) | 988, 1087, 1783, 1809 |
| FauI | CCCGC | 2 cut(s) | 825, 1002 |
| Fnu4HI | GCNGC | 6 cut(s) | 64, 428, 431, 1350, 1581, 1763 |
| FokI | GGATG | 7 cut(s) | 107, 400, 492, 688, 1163, 1234, 1805 |
| Fsp4HI | GCNGC | 6 cut(s) | 64, 428, 431, 1350, 1581, 1763 |
| FspBI | CTAG | 3 cut(s) | 255, 1652, 1757 |
| GluI | GCNGC | 6 cut(s) | 64, 428, 431, 1350, 1581, 1763 |
| GsaI | CCCAGC | 1 cut(s) | 1769 |
| GsuI | CTGGAG | 2 cut(s) | 969, 1314 |
| HaeIII | GGCC | 2 cut(s) | 318, 1099 |
| HapII | CCGG | 5 cut(s) | 60, 546, 705, 1585, 1830 |
| HgaI | GACGC | 1 cut(s) | 1123 |
| Hin1I | GRCGYC | 1 cut(s) | 462 |
| Hin1II | CATG | 4 cut(s) | 992, 1091, 1787, 1813 |
| HincII | GTYRAC | 3 cut(s) | 540, 1156, 1672 |
| HindII | GTYRAC | 3 cut(s) | 540, 1156, 1672 |
| HindIII | AAGCTT | 1 cut(s) | 860 |
| HinfI | GANTC | 7 cut(s) | 53, 169, 1052, 1214, 1231, 1712, 1802 |
| HpaI | GTTAAC | 2 cut(s) | 540, 1672 |
| HpaII | CCGG | 5 cut(s) | 60, 546, 705, 1585, 1830 |
| HphI | GGTGA | 4 cut(s) | 358, 484, 1073, 1862 |
| Hpy166II | GTNNAC | 6 cut(s) | 260, 460, 540, 1064, 1156, 1672 |
| Hpy8I | GTNNAC | 6 cut(s) | 260, 460, 540, 1064, 1156, 1672 |
| Hpy99I | CGWCG | 2 cut(s) | 467, 1223 |
| HpyAV | CCTTC | 6 cut(s) | 239, 349, 573, 1312, 1381, 1444 |
| HpyCH4IV | ACGT | 4 cut(s) | 462, 551, 805, 1444 |
| HpyCH4V | TGCA | 4 cut(s) | 266, 1247, 1441, 1468 |
| HpySE526I | ACGT | 4 cut(s) | 462, 551, 805, 1444 |
| Hsp92I | GRCGYC | 1 cut(s) | 462 |
| Hsp92II | CATG | 4 cut(s) | 992, 1091, 1787, 1813 |
| Kpn2I | TCCGGA | 1 cut(s) | 704 |
| KspAI | GTTAAC | 2 cut(s) | 540, 1672 |
| Kzo9I | GATC | 5 cut(s) | 922, 944, 979, 1012, 1825 |
| LmnI | GCTCC | 4 cut(s) | 187, 339, 935, 1312 |
| Lsp1109I | GCAGC | 5 cut(s) | 439, 442, 1336, 1592, 1774 |
| LweI | GCATC | 4 cut(s) | 296, 982, 1234, 1256 |
| MaeI | CTAG | 3 cut(s) | 255, 1652, 1757 |
| MaeII | ACGT | 4 cut(s) | 462, 551, 805, 1444 |
| MaeIII | GTNAC | 9 cut(s) | 41, 250, 300, 364, 725, 806, 1340, 1491, 1683 |
| MalI | GATC | 5 cut(s) | 924, 946, 981, 1014, 1827 |
| MboI | GATC | 5 cut(s) | 922, 944, 979, 1012, 1825 |
| MflI | RGATCY | 3 cut(s) | 944, 1012, 1825 |
| MhlI | GDGCHC | 3 cut(s) | 336, 1176, 1309 |
| MluCI | AATT | 6 cut(s) | 890, 910, 1105, 1136, 1165, 1463 |
| MlyI | GAGTC | 2 cut(s) | 47, 1721 |
| MmeI | TCCRAC | 1 cut(s) | 1830 |
| Mph1103I | ATGCAT | 1 cut(s) | 1249 |
| MroI | TCCGGA | 1 cut(s) | 704 |
| MseI | TTAA | 6 cut(s) | 411, 447, 528, 539, 1407, 1671 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1125, 1293 |
| MspA1I | CMGCKG | 1 cut(s) | 1765 |
| MspI | CCGG | 5 cut(s) | 60, 546, 705, 1585, 1830 |
| MspR9I | CCNGG | 6 cut(s) | 27, 60, 321, 1101, 1585, 1830 |
| Mva1269I | GAATGC | 1 cut(s) | 799 |
| MvaI | CCWGG | 3 cut(s) | 27, 321, 1101 |
| NciI | CCSGG | 3 cut(s) | 60, 1585, 1830 |
| NdeII | GATC | 5 cut(s) | 922, 944, 979, 1012, 1825 |
| NlaIII | CATG | 4 cut(s) | 992, 1091, 1787, 1813 |
| NlaIV | GGNNCC | 3 cut(s) | 227, 709, 880 |
| NmuCI | GTSAC | 2 cut(s) | 300, 364 |
| NsiI | ATGCAT | 1 cut(s) | 1249 |
| NspI | RCATGY | 1 cut(s) | 1813 |
| PagI | TCATGA | 1 cut(s) | 988 |
| PaqCI | CACCTGC | 1 cut(s) | 271 |
| PctI | GAATGC | 1 cut(s) | 799 |
| PfeI | GAWTC | 5 cut(s) | 169, 1052, 1214, 1231, 1802 |
| PflFI | GACNNNGTC | 1 cut(s) | 464 |
| PkrI | GCNGC | 6 cut(s) | 65, 429, 432, 1351, 1582, 1764 |
| PleI | GAGTC | 2 cut(s) | 47, 1720 |
| PpsI | GAGTC | 2 cut(s) | 47, 1720 |
| Ppu21I | YACGTR | 1 cut(s) | 552 |
| PpuMI | RGGWCCY | 3 cut(s) | 226, 879, 1648 |
| PsiI | TTATAA | 2 cut(s) | 36, 615 |
| Psp5II | RGGWCCY | 3 cut(s) | 226, 879, 1648 |
| Psp6I | CCWGG | 3 cut(s) | 25, 319, 1099 |
| PspFI | CCCAGC | 1 cut(s) | 1765 |
| PspGI | CCWGG | 3 cut(s) | 25, 319, 1099 |
| PspN4I | GGNNCC | 3 cut(s) | 227, 709, 880 |
| PspPI | GGNCC | 7 cut(s) | 204, 226, 317, 879, 1097, 1648, 1678 |
| PspPPI | RGGWCCY | 3 cut(s) | 226, 879, 1648 |
| PstNI | CAGNNNCTG | 1 cut(s) | 190 |
| PsuI | RGATCY | 3 cut(s) | 944, 1012, 1825 |
| PsyI | GACNNNGTC | 1 cut(s) | 464 |
| PvuII | CAGCTG | 1 cut(s) | 1765 |
| RsaI | GTAC | 2 cut(s) | 259, 900 |
| RsaNI | GTAC | 2 cut(s) | 258, 899 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1125, 1293 |
| SaqAI | TTAA | 6 cut(s) | 411, 447, 528, 539, 1407, 1671 |
| SatI | GCNGC | 6 cut(s) | 64, 428, 431, 1350, 1581, 1763 |
| Sau3AI | GATC | 5 cut(s) | 922, 944, 979, 1012, 1825 |
| Sau96I | GGNCC | 7 cut(s) | 204, 226, 317, 879, 1097, 1648, 1678 |
| SchI | GAGTC | 2 cut(s) | 47, 1721 |
| ScrFI | CCNGG | 6 cut(s) | 27, 60, 321, 1101, 1585, 1830 |
| SduI | GDGCHC | 3 cut(s) | 336, 1176, 1309 |
| SfaNI | GCATC | 4 cut(s) | 296, 982, 1234, 1256 |
| SinI | GGWCC | 5 cut(s) | 204, 226, 879, 1648, 1678 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1125, 1293 |
| SmlI | CTYRAG | 3 cut(s) | 1392, 1598, 1643 |
| SmoI | CTYRAG | 3 cut(s) | 1392, 1598, 1643 |
| SpeI | ACTAGT | 1 cut(s) | 254 |
| Sse9I | AATT | 6 cut(s) | 890, 910, 1105, 1136, 1165, 1463 |
| SsiI | CCGC | 5 cut(s) | 63, 598, 832, 1009, 1373 |
| SspMI | CTAG | 3 cut(s) | 255, 1652, 1757 |
| StyD4I | CCNGG | 6 cut(s) | 25, 58, 319, 1099, 1583, 1828 |
| StyI | CCWWGG | 3 cut(s) | 90, 933, 1506 |
| TaiI | ACGT | 4 cut(s) | 465, 554, 808, 1447 |
| TaqI | TCGA | 3 cut(s) | 690, 1366, 1857 |
| TasI | AATT | 6 cut(s) | 890, 910, 1105, 1136, 1165, 1463 |
| TatI | WGTACW | 2 cut(s) | 257, 898 |
| TauI | GCSGC | 1 cut(s) | 66 |
| TfiI | GAWTC | 5 cut(s) | 169, 1052, 1214, 1231, 1802 |
| Tru1I | TTAA | 6 cut(s) | 411, 447, 528, 539, 1407, 1671 |
| Tru9I | TTAA | 6 cut(s) | 411, 447, 528, 539, 1407, 1671 |
| TscAI | CASTG | 2 cut(s) | 1127, 1443 |
| TseFI | GTSAC | 2 cut(s) | 300, 364 |
| TseI | GCWGC | 5 cut(s) | 427, 430, 1349, 1580, 1762 |
| Tsp45I | GTSAC | 2 cut(s) | 300, 364 |
| TspDTI | ATGAA | 9 cut(s) | 114, 161, 404, 806, 1098, 1793, 1809, 1815, 1851 |
| TspGWI | ACGGA | 3 cut(s) | 575, 1207, 1691 |
| TspRI | CASTG | 2 cut(s) | 1127, 1443 |
| Tth111I | GACNNNGTC | 1 cut(s) | 464 |
| VpaK11BI | GGWCC | 5 cut(s) | 204, 226, 879, 1648, 1678 |
| XapI | RAATTY | 3 cut(s) | 890, 910, 1105 |
| XbaI | TCTAGA | 1 cut(s) | 1756 |
| XceI | RCATGY | 1 cut(s) | 1813 |
| XspI | CTAG | 3 cut(s) | 255, 1652, 1757 |
| ZraI | GACGTC | 1 cut(s) | 463 |
| Zsp2I | ATGCAT | 1 cut(s) | 1249 |