Rorug02G0578300

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002568
Physical Location & Seq
Forward (+)
70186868 .. 70192245
5378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0578300.1

Sequence Viewer

Length: 2952 bp
ATGGCCTCGTCGACCACCTCGTTCGCTGCTTCCGGCGTCGGTCTTCGTCTTCCCCAGTCTGTTTCCACCAAATGTTGCAGTAAAGCTTCTCTCTTTCCTCACCCAACTCTCTCCCTCACCTTCCACGCCAGACCCCAATTCTTCCGGGGACTAGCGTCCCGGCAATTCAACCCGAACGGTGCGTTTGGAACCGGGTCGGGCCGACTGGGCCGGACTCCAAACCCGTTTGTTGTGCGCTCCCAGGCTTCTTCAACCGGAAGGATTACACAGCAGGAATTCACGGAAATGGCGTGGCAGGCGGTGGTTTCGTCGCCGGAAGTGGCCAAGGAGAACAAGCATCAGATAGTGGAGACTGAGCATTTGATGAAGGCATTGCTTGAGCAGAAGAATGGGCTTGCTCGTCGGATTTTCGCTAAGGCTGGGGTGGATAATAGTAGGCTTCTTGAGGCCACTGATAAGTATATTCAGCGCCAACCTAAGGTTTTTGGTGACTCTGCGGGATCGATGTTAGGGCGTGATTTGGAAGCCTTGCTTCAGAGAGCCAGGGATTACAAGAAGGAATATGGGGACTCGTTTGTGTCTGTGGAGCATTTGGTTCTTGGTTTCATTCAAGATCAACGATTTGGGAAGCAAATATTTAAGGATTTTCAAATCTCCAAGCAGTCTTTGAAGTCGGCTATAGAATCCATAAGGGGACGGCAATCAGTTATTGACCAAGATCCTGAGGGGAAATATGAGTCCCTTGAAAAGTATGGTAAAGATCTGACAGCCATGGCAAAAGAAGGAAAGCTGGACCCGGTAATAGGAAGAGATGATGAAATACGCAGGTGCATCCAGATTCTCTCAAGAAGAACAAAGAACAACCCAGTGCTGATTGGTGAACCAGGTGTTGGGAAAACTGCAATTTCAGAAGGGCTTGCTCAGCGAATTGTGCAAGGGGATGTCCCACAAGCTTTAATGAATCGTAAGCTAATATCTCTTGACATGGGTGCGCTAATTGCTGGAGCAAAATATCGGGGAGAGTTTGAGGATAGGCTGAAGGCTGTACTCAAGGAAGTAACAGAATCAGAGGGCCAGATTGTCCTTTTTATTGATGAGATCCACACAGTTGTTGGAGCAGGTGCTACAAATGGTGCAATGGATGCTGGCAATCTATTAAAACCCATGCTTGGTCGGGGAGAGTTGCGGTGTATAGGTGCAACAACACTGGATGAATATCGCAAGTATATTGAGAAAGATCCAGCATTGGAGCGTCGTTTTCAGCAAGTTTATGTTGATCAACCTACTGTTGAGGATACAATTTCGATACTCCGAGGATTGCGTGAAAGATATGAGTTGCATCACGGGGTCCGCATTTCTGATGGTGCACTTGTGGAAGCTGCAATTCTCTCAGACCGTTACATCAGTGGGAGATTTTTACCTGACAAAGCTATCGACTTAGTTGATGAAGCTGCTGCCAAGTTGAAAATGGAAATTACATCAAAGCCCACAGCCCTAGATGAGATCAATCGTTCAGTATTGAAACTTGAAATGGAAAGACTGTCACTTACAAATGACACCGACAAAGCGTCCAAAGAGAGATTGAACCGCCTTGAGGCAGAGTTGTCCATCTTAAAAGAGAAACAATCTCAGCTGTCTGAGCAGTGGGAACATGAGAAGTCTGTCATGACTCGCATTCAGTCGATCAAGGAAGAGGTTGACAGGGTAAATCTGGAGATCCAGCAGGCTGAACGAGAGTATGATCTTAACCGTGCTGCTGAGCTGAAGTATGGGAGTCTGAATTCCTTACAACGCCAACTCCTCAGTGCTGAAAAGGAGCTCGATGAGTATATCAGGTCTGGGAAATCAATGCTGAGAGAGGAAGTTACTGGAAATGACATTTCTGAAATTGTCAGCAAGTGGACTGGTATTCCTGTTTCCAAGCTTCTACAGTCAGAGAGGGAAAAGCTCTTGCATTTGGAGGAAGAGCTGCATAAACGTGTTGTAGGACAGGATCCTGCAGTGAAATCAGTAGCTGAAGCTATTCAGCGGTCTCGAGCAGGTCTCTCAGATCCTCATCGCCCGATCGCTAGTTTCATGTTCATGGGCCCCACCGGTGTAGGGAAGACAGAACTAGCCAAGACCCTTGCTTCCTACATGTTCAACACTGAAGAAGCTCTTGTTAGAATTGATATGAGTGAGTACATGGAAAAGCATGCTGTCTCAAGACTGATAGGTGCTCCACCTGGCTATGTGGGGTATGAGGAGGGAGGACAGCTGACAGAGGTTGTTCGCCGGAGGCCATATTCAGTTATCCTGTTTGATGAGATTGAAAAGGCACATTCTGATGTGTTCAATGTTTTCCTTCAAATTTTAGATGATGGGAGAGTAACTGACTCACAGGGCCGCACTGTGAGTTTCACCAACACTGTGATCATTATGACCTCAAATGTTGGTTCACAGTACATACTTAACGGAGATGATGAAGTATCACCAAAGGAGTTGGGTTATGAAACTATAAAGCAGCGGGTCATGGAGGCTGCAAGGTCCATATTTCGCCCTGAGTTCATGAATCGGGTTGATGAGTACATAGTTTTCCAGCCCTTGGACCGTGATCAGATAAACAACATTGTCAAGATACAGTTGGAACGAGTCCAAAAGAGAATTGCAGACCGCAAGATGAAGATCCAAGTGAGCGAGGCAGCTGTGCAGCTTCTTGGAAATCTCGGCTACGATCCAAACTACGGTGCTAGGCCAGTCAAGCGAGTGATTCAGCAATATGTAGAAAATGAGCTTGCCAAGGGCATCTTGAGAGGAGAGTTCAAAGAAGAAGACACCATTTTGGTCGACACAGAGGTCACGGCGTTTGCCAATGGCCAGCTACCCCAGCAAAAGCTATTCTTCAAGACGCTTGAAACTGGTTCAGAATCTCCTACAACAGAGAACAAAGAAGCTTTGTCAGGGGCCGTCTAA

Protein Analysis

983

Amino Acids

110.22

Weight (kDa)

6.21

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 92 - 215 2.6e-35 Clp repeat (R) N-terminal domain
NBD_SMAX1 PF23569 272 - 373 8.6e-06 SMAX1 nucleotide binding domain
AAA PF00004 290 - 421 2e-12 ATPase family associated with various cellular activities (AAA)
AAA_lid_9 PF17871 429 - 531 7.3e-34 AAA lid domain
Sigma54_activat PF00158 664 - 810 5e-06 Sigma-54 interaction domain
AAA_2 PF07724 687 - 855 8.8e-70 AAA domain (Cdc48 subfamily)
AAA_5 PF07728 692 - 813 2e-11 AAA domain (dynein-related subfamily)
AAA PF00004 693 - 809 1.7e-08 ATPase family associated with various cellular activities (AAA)
ClpB_D2-small PF10431 862 - 942 7.4e-27 C-terminal, D2-small domain, of ClpB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 816, 1109
AasI GACNNNNNNGTC 1 cut(s) 2834
Acc36I ACCTGC 3 cut(s) 816, 1109, 2030
AccB7I CCANNNNNTGG 2 cut(s) 890, 2584
AccI GTMKAC 2 cut(s) 11, 2826
AciI CCGC 9 cut(s) 299, 497, 1186, 1351, 1588, 2029, 2386, 2506, 2653
AcoI YGGCCR 2 cut(s) 321, 2854
AcsI RAATTY 3 cut(s) 275, 1780, 2349
AcuI CTGAAG 5 cut(s) 518, 1058, 1784, 2037, 2169
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 4 cut(s) 1047, 2183, 2444, 2567
AfiI CCNNNNNNNGG 8 cut(s) 478, 803, 890, 1169, 1594, 2100, 2584, 2723
AflIII ACRYGT 2 cut(s) 1978, 2136
AgeI ACCGGT 1 cut(s) 2093
AhdI GACNNNNNGTC 1 cut(s) 1567
AjnI CCWGG 4 cut(s) 240, 542, 883, 2224
AjuI GAANNNNNNNTTGG 2 cut(s) 873, 905
Alw21I GWGCWC 3 cut(s) 1369, 1821, 2221
Alw26I GTCTC 4 cut(s) 344, 2037, 2048, 2206
Alw44I GTGCAC 1 cut(s) 1365
AlwNI CAGNNNCTG 1 cut(s) 2015
Ama87I CYCGRG 1 cut(s) 2034
ApaI GGGCCC 1 cut(s) 2090
ApaLI GTGCAC 1 cut(s) 1365
ApoI RAATTY 3 cut(s) 275, 1780, 2349
ArsI GACNNNNNNTTYG 2 cut(s) 343, 375
AsiGI ACCGGT 1 cut(s) 2093
Asp700I GAANNNNTTC 1 cut(s) 2022
AspLEI GCGC 3 cut(s) 237, 471, 994
AsuC2I CCSGG 4 cut(s) 146, 160, 193, 797
AsuHPI GGTGA 6 cut(s) 92, 109, 500, 890, 2392, 2463
AvaI CYCGRG 1 cut(s) 2034
AvaII GGWCC 4 cut(s) 793, 1348, 2526, 2587
AxyI CCTNAGG 2 cut(s) 477, 723
BaeGI GKGCMC 2 cut(s) 1369, 2090
BalI TGGCCA 2 cut(s) 323, 2856
BamHI GGATCC 1 cut(s) 1993
BanII GRGCYC 2 cut(s) 1821, 2090
BbsI GAAGAC 4 cut(s) 35, 41, 2111, 2817
Bbv12I GWGCWC 3 cut(s) 1369, 1821, 2221
BccI CCATC 3 cut(s) 1355, 1616, 2354
BceAI ACGGC 3 cut(s) 713, 2856, 2930
BciT130I CCWGG 4 cut(s) 242, 544, 885, 2226
BciVI GTATCC 1 cut(s) 1288
BclI TGATCA 3 cut(s) 1276, 2412, 2593
BcnI CCSGG 4 cut(s) 146, 160, 193, 797
BcoDI GTCTC 4 cut(s) 344, 2037, 2048, 2206
BfaI CTAG 5 cut(s) 152, 1496, 2070, 2114, 2730
BfmI CTRYAG 3 cut(s) 678, 1928, 1998
BfoI RGCGCY 1 cut(s) 472
BfuAI ACCTGC 3 cut(s) 816, 1109, 2030
BfuI GTATCC 1 cut(s) 1288
BglI GCCNNNNNGGC 1 cut(s) 207
BglII AGATCT 1 cut(s) 760
BlpI GCTNAGC 2 cut(s) 921, 1758
Bme1390I CCNGG 8 cut(s) 146, 160, 193, 242, 544, 797, 885, 2226
Bme18I GGWCC 4 cut(s) 793, 1348, 2526, 2587
BmeRI GACNNNNNGTC 1 cut(s) 1567
BmeT110I CYCGRG 1 cut(s) 2034
BmiI GGNNCC 7 cut(s) 190, 795, 1349, 1995, 2088, 2089, 2944
BmrFI CCNGG 8 cut(s) 146, 160, 193, 242, 544, 797, 885, 2226
BmrI ACTGGG 3 cut(s) 49, 215, 860
BmsI GCATC 5 cut(s) 346, 840, 1132, 1348, 2793
BmuI ACTGGG 3 cut(s) 49, 215, 860
BoxI GACNNNNGTC 1 cut(s) 154
BpiI GAAGAC 4 cut(s) 35, 41, 2111, 2817
BplI GAGNNNNNCTC 2 cut(s) 2028, 2060
BpmI CTGGAG 2 cut(s) 1023, 1733
Bpu10I CCTNAGC 1 cut(s) 414
Bpu1102I GCTNAGC 2 cut(s) 921, 1758
BpuEI CTTGAG 7 cut(s) 398, 464, 829, 1034, 1613, 2188, 2809
BpuMI CCSGG 4 cut(s) 146, 160, 193, 797
Bsa29I ATCGAT 1 cut(s) 503
BsaBI GATNNNNATC 3 cut(s) 1215, 2055, 2663
BsaHI GRCGYC 1 cut(s) 36
BsaI GGTCTC 2 cut(s) 2037, 2048
BsaJI CCNNGG 8 cut(s) 145, 240, 324, 543, 771, 1312, 2583, 2778
BsaWI WCCGGW 2 cut(s) 254, 2093
BsaXI ACNNNNNCTCC 2 cut(s) 1782, 1812
Bsc4I CCNNNNNNNGG 8 cut(s) 478, 803, 890, 1169, 1594, 2100, 2584, 2723
Bse118I RCCGGY 1 cut(s) 2093
Bse1I ACTGG 8 cut(s) 55, 210, 866, 1212, 1873, 1909, 2735, 2902
Bse21I CCTNAGG 2 cut(s) 477, 723
Bse3DI GCAATG 2 cut(s) 371, 1143
Bse8I GATNNNNATC 3 cut(s) 1215, 2055, 2663
BseBI CCWGG 4 cut(s) 242, 544, 885, 2226
BseCI ATCGAT 1 cut(s) 503
BseDI CCNNGG 8 cut(s) 145, 240, 324, 543, 771, 1312, 2583, 2778
BseGI GGATG 4 cut(s) 831, 946, 1147, 1216
BseJI GATNNNNATC 3 cut(s) 1215, 2055, 2663
BseLI CCNNNNNNNGG 8 cut(s) 478, 803, 890, 1169, 1594, 2100, 2584, 2723
BseMI GCAATG 2 cut(s) 371, 1143
BseNI ACTGG 8 cut(s) 55, 210, 866, 1212, 1873, 1909, 2735, 2902
BseRI GAGGAG 3 cut(s) 1790, 2258, 2808
BseSI GKGCMC 2 cut(s) 1369, 2090
BseYI CCCAGC 2 cut(s) 419, 2865
BsgI GTGCAG 1 cut(s) 2708
Bsh1285I CGRYCG 1 cut(s) 2067
BshTI ACCGGT 1 cut(s) 2093
BshVI ATCGAT 1 cut(s) 503
BsiEI CGRYCG 1 cut(s) 2067
BsiHKAI GWGCWC 3 cut(s) 1369, 1821, 2221
BsiHKCI CYCGRG 1 cut(s) 2034
BslFI GGGAC 6 cut(s) 142, 162, 581, 708, 724, 929
BslI CCNNNNNNNGG 8 cut(s) 478, 803, 890, 1169, 1594, 2100, 2584, 2723
BsmAI GTCTC 4 cut(s) 344, 2037, 2048, 2206
BsmFI GGGAC 6 cut(s) 142, 162, 581, 708, 724, 929
BsmI GAATGC 1 cut(s) 1674
Bso31I GGTCTC 2 cut(s) 2037, 2048
BsoBI CYCGRG 1 cut(s) 2034
Bsp120I GGGCCC 1 cut(s) 2086
Bsp1286I GDGCHC 4 cut(s) 1369, 1821, 2090, 2221
Bsp1720I GCTNAGC 2 cut(s) 921, 1758
Bsp19I CCATGG 1 cut(s) 771
BspACI CCGC 9 cut(s) 299, 497, 1186, 1351, 1588, 2029, 2386, 2506, 2653
BspDI ATCGAT 1 cut(s) 503
BspHI TCATGA 2 cut(s) 1665, 2547
BspLI GGNNCC 7 cut(s) 190, 795, 1349, 1995, 2088, 2089, 2944
BspMAI CTGCAG 1 cut(s) 2002
BspMI ACCTGC 3 cut(s) 816, 1109, 2030
BspQI GCTCTTC 1 cut(s) 1959
BspTNI GGTCTC 2 cut(s) 2037, 2048
BsrDI GCAATG 2 cut(s) 371, 1143
BsrFI RCCGGY 1 cut(s) 2093
BsrI ACTGG 8 cut(s) 55, 210, 866, 1212, 1873, 1909, 2735, 2902
BssAI RCCGGY 1 cut(s) 2093
BssECI CCNNGG 8 cut(s) 145, 240, 324, 543, 771, 1312, 2583, 2778
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 4 cut(s) 324, 771, 2583, 2778
Bst2UI CCWGG 4 cut(s) 242, 544, 885, 2226
Bst6I CTCTTC 3 cut(s) 802, 1686, 1959
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 1142
BstC8I GCNNGC 8 cut(s) 297, 396, 918, 1147, 1725, 2196, 2775, 2858
BstDSI CCRYGG 1 cut(s) 771
BstF5I GGATG 4 cut(s) 831, 946, 1147, 1216
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 3 cut(s) 237, 471, 994
BstMAI GTCTC 4 cut(s) 344, 2037, 2048, 2206
BstMCI CGRYCG 1 cut(s) 2067
BstMWI GCNNNNNNNGC 9 cut(s) 207, 296, 922, 931, 998, 1142, 1639, 2740, 2866
BstNI CCWGG 4 cut(s) 242, 544, 885, 2226
BstNSI RCATGY 2 cut(s) 2140, 2198
BstPAI GACNNNNGTC 1 cut(s) 154
BstSCI CCNGG 8 cut(s) 144, 158, 191, 240, 542, 795, 883, 2224
BstSFI CTRYAG 3 cut(s) 678, 1928, 1998
BstSLI GKGCMC 2 cut(s) 1369, 2090
BstV2I GAAGAC 4 cut(s) 35, 41, 2111, 2817
BstX2I RGATCY 8 cut(s) 718, 760, 1098, 1237, 1716, 1993, 2050, 2664
BstYI RGATCY 8 cut(s) 718, 760, 1098, 1237, 1716, 1993, 2050, 2664
Bsu15I ATCGAT 1 cut(s) 503
Bsu36I CCTNAGG 2 cut(s) 477, 723
BsuI GTATCC 1 cut(s) 1288
BsuTUI ATCGAT 1 cut(s) 503
BtgI CCRYGG 1 cut(s) 771
BtgZI GCGATG 1 cut(s) 2042
BtsCI GGATG 4 cut(s) 831, 946, 1147, 1216
BtsI GCAGTG 2 cut(s) 1649, 2007
BveI ACCTGC 3 cut(s) 816, 1109, 2030
Cac8I GCNNGC 8 cut(s) 297, 396, 918, 1147, 1725, 2196, 2775, 2858
CaiI CAGNNNCTG 1 cut(s) 2015
CciI TCATGA 2 cut(s) 1665, 2547
CfoI GCGC 3 cut(s) 237, 471, 994
Cfr10I RCCGGY 1 cut(s) 2093
ClaI ATCGAT 1 cut(s) 503
CseI GACGC 5 cut(s) 25, 144, 1241, 1557, 2896
CsiI ACCWGGT 1 cut(s) 883
Csp6I GTAC 4 cut(s) 1046, 2182, 2443, 2566
CspAI ACCGGT 1 cut(s) 2093
CviQI GTAC 4 cut(s) 1046, 2182, 2443, 2566
DrdI GACNNNNNNGTC 1 cut(s) 2834
DriI GACNNNNNGTC 1 cut(s) 1567
DseDI GACNNNNNNGTC 1 cut(s) 2834
EaeI YGGCCR 2 cut(s) 321, 2854
Eam1104I CTCTTC 3 cut(s) 802, 1686, 1959
Eam1105I GACNNNNNGTC 1 cut(s) 1567
EarI CTCTTC 3 cut(s) 802, 1686, 1959
Ecl136II GAGCTC 1 cut(s) 1819
Eco130I CCWWGG 4 cut(s) 324, 771, 2583, 2778
Eco24I GRGCYC 2 cut(s) 1821, 2090
Eco31I GGTCTC 2 cut(s) 2037, 2048
Eco47I GGWCC 4 cut(s) 793, 1348, 2526, 2587
Eco53kI GAGCTC 1 cut(s) 1819
Eco57I CTGAAG 5 cut(s) 518, 1058, 1784, 2037, 2169
Eco81I CCTNAGG 2 cut(s) 477, 723
Eco88I CYCGRG 1 cut(s) 2034
EcoICRI GAGCTC 1 cut(s) 1819
EcoO109I RGGNCCY 1 cut(s) 2087
EcoRI GAATTC 2 cut(s) 275, 1780
EcoRII CCWGG 4 cut(s) 240, 542, 883, 2224
EcoT14I CCWWGG 4 cut(s) 324, 771, 2583, 2778
EcoT38I GRGCYC 2 cut(s) 1821, 2090
ErhI CCWWGG 4 cut(s) 324, 771, 2583, 2778
FalI AAGNNNNNCTT 8 cut(s) 516, 548, 2142, 2174, 2771, 2803, 2864, 2896
FaqI GGGAC 6 cut(s) 142, 162, 581, 708, 724, 929
FauI CCCGC 2 cut(s) 490, 2499
FbaI TGATCA 3 cut(s) 1276, 2412, 2593
FblI GTMKAC 2 cut(s) 11, 2826
FokI GGATG 4 cut(s) 818, 953, 1154, 1223
FriOI GRGCYC 2 cut(s) 1821, 2090
FspBI CTAG 5 cut(s) 152, 1496, 2070, 2114, 2730
GlaI GCGC 3 cut(s) 236, 470, 993
GsaI CCCAGC 2 cut(s) 423, 2869
GsuI CTGGAG 2 cut(s) 1023, 1733
HaeII RGCGCY 1 cut(s) 472
HgaI GACGC 5 cut(s) 25, 144, 1241, 1557, 2896
HhaI GCGC 3 cut(s) 237, 471, 994
Hin1I GRCGYC 1 cut(s) 36
Hin6I GCGC 3 cut(s) 235, 469, 992
HinP1I GCGC 3 cut(s) 235, 469, 992
HincII GTYRAC 3 cut(s) 12, 1699, 2827
HindII GTYRAC 3 cut(s) 12, 1699, 2827
HindIII AAGCTT 4 cut(s) 84, 951, 1922, 2931
HphI GGTGA 6 cut(s) 92, 109, 500, 890, 2392, 2463
Hpy166II GTNNAC 7 cut(s) 12, 881, 1367, 1699, 1902, 2438, 2827
Hpy8I GTNNAC 7 cut(s) 12, 881, 1367, 1699, 1902, 2438, 2827
Hpy99I CGWCG 5 cut(s) 13, 41, 313, 405, 1257
HpyAV CCTTC 8 cut(s) 130, 252, 361, 550, 776, 905, 1033, 2354
HpyCH4IV ACGT 1 cut(s) 1978
HpyF10VI GCNNNNNNNGC 9 cut(s) 207, 296, 922, 931, 998, 1142, 1639, 2740, 2866
HpySE526I ACGT 1 cut(s) 1978
Hsp92I GRCGYC 1 cut(s) 36
HspAI GCGC 3 cut(s) 235, 469, 992
Ksp22I TGATCA 3 cut(s) 1276, 2412, 2593
LguI GCTCTTC 1 cut(s) 1959
LmnI GCTCC 7 cut(s) 242, 586, 1004, 1115, 1249, 1816, 2224
LweI GCATC 5 cut(s) 346, 840, 1132, 1348, 2793
MabI ACCWGGT 1 cut(s) 883
MaeI CTAG 5 cut(s) 152, 1496, 2070, 2114, 2730
MaeII ACGT 1 cut(s) 1978
MaeIII GTNAC 7 cut(s) 488, 1057, 1397, 1542, 1864, 2368, 2836
MflI RGATCY 8 cut(s) 718, 760, 1098, 1237, 1716, 1993, 2050, 2664
MhlI GDGCHC 4 cut(s) 1369, 1821, 2090, 2221
MlsI TGGCCA 2 cut(s) 323, 2856
MluNI TGGCCA 2 cut(s) 323, 2856
MlyI GAGTC 8 cut(s) 208, 485, 563, 746, 1663, 1783, 2369, 2640
MmeI TCCRAC 3 cut(s) 383, 1093, 2604
Mox20I TGGCCA 2 cut(s) 323, 2856
MroXI GAANNNNTTC 1 cut(s) 2022
MscI TGGCCA 2 cut(s) 323, 2856
MseI TTAA 6 cut(s) 639, 956, 1157, 1613, 1746, 2451
MslI CAYNNNNRTG 4 cut(s) 284, 1977, 2081, 2325
Msp20I TGGCCA 2 cut(s) 323, 2856
MspA1I CMGCKG 5 cut(s) 1633, 2029, 2257, 2506, 2684
MspR9I CCNGG 8 cut(s) 146, 160, 193, 242, 544, 797, 885, 2226
Mva1269I GAATGC 1 cut(s) 1674
MvaI CCWGG 4 cut(s) 242, 544, 885, 2226
MwoI GCNNNNNNNGC 9 cut(s) 207, 296, 922, 931, 998, 1142, 1639, 2740, 2866
NciI CCSGG 4 cut(s) 146, 160, 193, 797
NcoI CCATGG 1 cut(s) 771
NlaIV GGNNCC 7 cut(s) 190, 795, 1349, 1995, 2088, 2089, 2944
NmeAIII GCCGAG 1 cut(s) 2685
NmuCI GTSAC 3 cut(s) 488, 1542, 2836
NspI RCATGY 2 cut(s) 2140, 2198
PaeI GCATGC 1 cut(s) 2198
PaeR7I CTCGAG 1 cut(s) 2034
PagI TCATGA 2 cut(s) 1665, 2547
PaqCI CACCTGC 2 cut(s) 816, 1109
PciI ACATGT 1 cut(s) 2136
PciSI GCTCTTC 1 cut(s) 1959
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 287
PctI GAATGC 1 cut(s) 1674
PdmI GAANNNNTTC 1 cut(s) 2022
PfeI GAWTC 7 cut(s) 683, 838, 961, 1064, 2551, 2749, 2906
PflMI CCANNNNNTGG 2 cut(s) 890, 2584
PinAI ACCGGT 1 cut(s) 2093
Ple19I CGATCG 1 cut(s) 2067
PleI GAGTC 8 cut(s) 208, 485, 563, 745, 1663, 1782, 2369, 2639
PpsI GAGTC 8 cut(s) 208, 485, 563, 745, 1663, 1782, 2369, 2639
PscI ACATGT 1 cut(s) 2136
PshAI GACNNNNGTC 1 cut(s) 154
Psp124BI GAGCTC 1 cut(s) 1821
Psp6I CCWGG 4 cut(s) 240, 542, 883, 2224
PspFI CCCAGC 2 cut(s) 419, 2865
PspGI CCWGG 4 cut(s) 240, 542, 883, 2224
PspN4I GGNNCC 7 cut(s) 190, 795, 1349, 1995, 2088, 2089, 2944
PspOMI GGGCCC 1 cut(s) 2086
PstI CTGCAG 1 cut(s) 2002
PstNI CAGNNNCTG 1 cut(s) 2015
PsuI RGATCY 8 cut(s) 718, 760, 1098, 1237, 1716, 1993, 2050, 2664
PvuI CGATCG 1 cut(s) 2067
PvuII CAGCTG 3 cut(s) 1633, 2257, 2684
RsaI GTAC 4 cut(s) 1047, 2183, 2444, 2567
RsaNI GTAC 4 cut(s) 1046, 2182, 2443, 2566
RseI CAYNNNNRTG 4 cut(s) 284, 1977, 2081, 2325
SacI GAGCTC 1 cut(s) 1821
SalI GTCGAC 2 cut(s) 10, 2825
SapI GCTCTTC 1 cut(s) 1959
SaqAI TTAA 6 cut(s) 639, 956, 1157, 1613, 1746, 2451
SchI GAGTC 8 cut(s) 208, 485, 563, 746, 1663, 1783, 2369, 2640
ScrFI CCNGG 8 cut(s) 146, 160, 193, 242, 544, 797, 885, 2226
SduI GDGCHC 4 cut(s) 1369, 1821, 2090, 2221
SexAI ACCWGGT 1 cut(s) 883
SfaNI GCATC 5 cut(s) 346, 840, 1132, 1348, 2793
SfcI CTRYAG 3 cut(s) 678, 1928, 1998
SfiI GGCCNNNNNGGCC 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 2034
SgrAI CRCCGGYG 1 cut(s) 2093
SinI GGWCC 4 cut(s) 793, 1348, 2526, 2587
SlaI CTCGAG 1 cut(s) 2034
SmiMI CAYNNNNRTG 4 cut(s) 284, 1977, 2081, 2325
SmlI CTYRAG 8 cut(s) 377, 443, 844, 1049, 1592, 2034, 2203, 2788
SmoI CTYRAG 8 cut(s) 377, 443, 844, 1049, 1592, 2034, 2203, 2788
SphI GCATGC 1 cut(s) 2198
SsiI CCGC 9 cut(s) 299, 497, 1186, 1351, 1588, 2029, 2386, 2506, 2653
SspI AATATT 1 cut(s) 636
SspMI CTAG 5 cut(s) 152, 1496, 2070, 2114, 2730
SstI GAGCTC 1 cut(s) 1821
StyD4I CCNGG 8 cut(s) 144, 158, 191, 240, 542, 795, 883, 2224
StyI CCWWGG 4 cut(s) 324, 771, 2583, 2778
TaiI ACGT 1 cut(s) 1981
TaqI TCGA 8 cut(s) 11, 503, 1304, 1434, 1682, 1821, 2035, 2826
TaqII GACCGA 1 cut(s) 29
TatI WGTACW 4 cut(s) 1045, 2181, 2442, 2565
TauI GCSGC 1 cut(s) 2388
TfiI GAWTC 7 cut(s) 683, 838, 961, 1064, 2551, 2749, 2906
Tru1I TTAA 6 cut(s) 639, 956, 1157, 1613, 1746, 2451
Tru9I TTAA 6 cut(s) 639, 956, 1157, 1613, 1746, 2451
TseFI GTSAC 3 cut(s) 488, 1542, 2836
Tsp45I GTSAC 3 cut(s) 488, 1542, 2836
TspGWI ACGGA 2 cut(s) 296, 2469
Van91I CCANNNNNTGG 2 cut(s) 890, 2584
VneI GTGCAC 1 cut(s) 1365
VpaK11BI GGWCC 4 cut(s) 793, 1348, 2526, 2587
XapI RAATTY 3 cut(s) 275, 1780, 2349
XceI RCATGY 2 cut(s) 2140, 2198
XcmI CCANNNNNNNNNTGG 2 cut(s) 1109, 1465
XhoI CTCGAG 1 cut(s) 2034
XmiI GTMKAC 2 cut(s) 11, 2826
XmnI GAANNNNTTC 1 cut(s) 2022
XspI CTAG 5 cut(s) 152, 1496, 2070, 2114, 2730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.