Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002568

Physical Location & Seq

Genomic Coordinates Forward (+)

1331729 .. 1336617

Gene Structure 4889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1016600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGGCCAAGAAGAACAAGAACCCGGGAAGGGGAGGGTACTATGGCGGTGCATTTGAGCAGGCTGGTGAATGCTCGGGTAGCTCAGGGAGAATCGACGCAGAAGTTACTGGCTCGGAGGATTCAAGTGCTCCTACGAGGAAAAGTATTAGTTTGAATTCTAGTAACCGCGACAGTTTTCGTGTGCCCATACAAATTCTTCCCTTGTCAAACATGTTGTCATCAGAGAGGAAGGATTTGATACATAGGTTGAGAATGGAACTTGAACAGATACGAATACTTCAGAAAAAAGTTGAAATGCATAAAACCAATGGTGTTGCAGTGTCCTCTTCTAGTGATATCATCAGCAATGGCCAGAATGGGCCGCATGTCGATAGTTTTAGAAAGTCGTCGACATTGACTTCTGTGTCGGGGAAAAAACTGAATCTTGGGGCTCCAAAAGCACAGACACGGAATCCGGAACCTTCTGGGAGGTTTGACTCTACCACTGCTAGTGCGATTCTTATGAAACAATGCGAGGCACTATTGAAACGGTTGATGGCCCATCAATCCAGTTGGCTTTTCAAGGAACCTGTTGATGTGGTGAAGTTGAACATTCCAGATTATTTCACTGTTATCAAACATCCAATGGACTTGGGTACAATAAAGAGCAAGATAGCTTCGGGATCTTATTCATCCCCGTTGGAGTTTGCTGCTGATGTAAGGATGACCTTCACCAATGCTATGACCTACAATCCACCACAAAATAAGGTCTATGCCATGGCTGATACTCTTAGTAAATTTTTTGAAGTCAGGTGGAAAACCATTGAGAAAAAACTGCCCAAGGCTGATTCCCAACCACTGCCAACTAAATCTGGTTCTCGCGAAGGCATGGAAACTTCTAAACCATTGCCCCCCTCAAAAAAGAGGACTATCACGTCAGTGCACAATGAAGTCAAGTCTGAGCCTCCTAAGCGAGTAATGACAACAGAGGAGAAGCTCAATCTGAGCAGAGAACTGGAGTCTTTGCTTGGAGAGATGCCGTTACACATCATTGATTTCTTGAAGGAGCACAGTTCAAATGGAAAGGACACTGGAGAGGATGAGATTGAGATTGATATCGATGTTCTAAGTGATGATACTTTGTTCACCTTACGGAGGCTTTTAAATGAGTATTTGCAAGAGAAACGAAAGAACCATGCAAAGGCTGAACCTTGTTCAATGGAGCTTGTCAATGAATCAGGGTTGAGCAATTCATCCATGCAGCCATGTAAAGGGAATGATCCGGCTGATGAAGATGTTGATATTGGTGGAAATGAGCCTCCTGTCTCAAGCTATCCTCCTGTGGAGATAGAAATGGATACTGGCCATAAAAGTAGTAAAGCCATCAGCTCAAGCAGCTCCAGTGATTCAGATTCTAGCAGTTCTTCTGAGAGTGAATGTGATGATGTGAAGGCTGCAAGTCTGGTACCAGAAACTGTGAGTTCTGGAGCTCATTTAGATGTAAAGACAACAATTGATAATCCCCTCGAAGGAAATCAGTCTGATAGTGGGTTGGATCAAGTTGAACAAAGTTCCCAGCAGAAGCCAAGTCCTGTTGAGTCAGATTGTTGCCAGCATGGAGACAGTGCTCCCCAAGAGAGGCCAGTCTCCCCCGAGAAGCAGTACAGGGCTGCTCTATTGAAGAATCGTTTTGCTGATACCATTTTAAGAGCACGTGAGAAAACACTTAATCAGGGTGATAAAGGAGATCCGGAGAAATTGCGGCGCCAGAGGGAGGAACTTGAACTGCAACGGAAGAAAGAGAAAGCACGGTTACAAGCGGAAGCTAAGGCTGCTGAGGATGCTCGAAGGCGAGCGGAAGCAGAAGCTGCAGCTGAGGCTAAACGGAAGAGGGAGCTTGAGAGAGAAGCAGCAAGGCAGGCATTGCTGCAGATGGAAAAGACTGTTGAAATCAACGAGAACTCTCGGTTTCTTAAAGATCTGGAGATGCTTAGAACTGCCCCTGCAGAGCAGCTACCGAGCTCTGTAGACGAAACGAGCCCCGATCACTCGCAGGATGGCTTAGGCGGCTTTAACTTTGGAGGGAGTAACCCGTTGGAACAACTTGGCTTGTACATGAAAGACGATGATGAGGAGGAAGACGCCGAGCCTGTTAGTGTTCCTCCAGGTACTGTAAATGCTTCTCCGAGTCCTGTAAATGATATAGAAGAGGGAGAAATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

735

Amino Acids

80.8

Weight (kDa)

5.28

Isoelectric Point (pI)

60.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	171 - 255	2.9e-21	Bromodomain
BET	PF17035	319 - 382	4.7e-17	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01770 AT3G01770 AT3G27260 AT3G27260 AT3G27260 AT3G27260 AT5G14270 AT5G14270 AT5G14270
fragaria_vesca	FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920
malus_domestica	MD09G1016100.v1.1 MD17G1016600.v1.1
prunus_persica	Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1
pyrus_communis	pycom111g01310 pycom17g01330
rosa_chinensis	RchiOBHm_Chr2g0174631
rosa_laevigata	RLG00000022278
rosa_multiflora	Rmu_sc0003649.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077990
rosa_rugosa	Rorug02G0578200 Rorug02G0578300 Rorug02G0578400 Rorug02G0578500
rosa_samantha	Rh2AG659500 Rh2BG670300 Rh2CG633600 Rh2DG684000
rosa_wichuraiana	Rw2G054010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	403, 913
Acc65I	GGTACC	1 cut(s)	1444
AccB1I	GGYRCC	2 cut(s)	1444, 1743
AccBSI	CCGCTC	1 cut(s)	1835
AccI	GTMKAC	2 cut(s)	389, 2007
AccII	CGCG	2 cut(s)	168, 861
AccIII	TCCGGA	2 cut(s)	454, 1729
AciI	CCGC	7 cut(s)	45, 166, 362, 1741, 1799, 1835, 2046
AclWI	GGATC	4 cut(s)	670, 1253, 1542, 1721
AcoI	YGGCCR	3 cut(s)	3, 349, 1342
AcsI	RAATTY	3 cut(s)	154, 192, 776
AcuI	CTGAAG	1 cut(s)	263
AcvI	CACGTG	1 cut(s)	1694
AcyI	GRCGYC	2 cut(s)	1744, 2121
AfaI	GTAC	6 cut(s)	38, 637, 1446, 1643, 2093, 2149
AfiI	CCNNNNNNNGG	8 cut(s)	28, 29, 1134, 1180, 1250, 1508, 1617, 1753
AflIII	ACRYGT	1 cut(s)	210
AjiI	CACGTC	1 cut(s)	915
AjnI	CCWGG	1 cut(s)	2143
AleI	CACNNNNGTG	1 cut(s)	917
Alw21I	GWGCWC	7 cut(s)	130, 924, 1050, 1471, 1609, 1693, 2003
Alw26I	GTCTC	3 cut(s)	1309, 1593, 1630
Alw44I	GTGCAC	1 cut(s)	920
AlwI	GGATC	4 cut(s)	670, 1253, 1542, 1721
AlwNI	CAGNNNCTG	3 cut(s)	1454, 1847, 2150
Ama87I	CYCGRG	3 cut(s)	22, 73, 1631
Aor13HI	TCCGGA	2 cut(s)	454, 1729
AoxI	GGCC	6 cut(s)	3, 349, 359, 537, 1342, 1619
ApaLI	GTGCAC	1 cut(s)	920
ApoI	RAATTY	3 cut(s)	154, 192, 776
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
Asp718I	GGTACC	1 cut(s)	1444
AspLEI	GCGC	1 cut(s)	1746
AspS9I	GGNCC	2 cut(s)	359, 538
AsuC2I	CCSGG	2 cut(s)	23, 24
AsuHPI	GGTGA	5 cut(s)	77, 592, 703, 1117, 1727
AvaI	CYCGRG	3 cut(s)	22, 73, 1631
BaeGI	GKGCMC	2 cut(s)	186, 924
BaeI	ACNNNNGTAYC	2 cut(s)	230, 263
BalI	TGGCCA	3 cut(s)	5, 351, 1344
BanI	GGYRCC	2 cut(s)	1444, 1743
BanII	GRGCYC	4 cut(s)	433, 1471, 2003, 2021
BbrPI	CACGTG	1 cut(s)	1694
BbsI	GAAGAC	1 cut(s)	2124
Bbv12I	GWGCWC	7 cut(s)	130, 924, 1050, 1471, 1609, 1693, 2003
BbvCI	CCTCAGC	2 cut(s)	1815, 1854
BccI	CCATC	5 cut(s)	529, 549, 1370, 1906, 2030
BceAI	ACGGC	1 cut(s)	1003
BciT130I	CCWGG	1 cut(s)	2145
BciVI	GTATCC	1 cut(s)	1330
BcnI	CCSGG	2 cut(s)	23, 24
BcoDI	GTCTC	3 cut(s)	1309, 1593, 1630
BfaI	CTAG	4 cut(s)	159, 330, 489, 1395
BfmI	CTRYAG	4 cut(s)	1848, 1907, 1983, 2004
BfoI	RGCGCY	1 cut(s)	1747
BfuI	GTATCC	1 cut(s)	1330
BglII	AGATCT	1 cut(s)	1957
Bme1390I	CCNGG	3 cut(s)	23, 24, 2145
BmeT110I	CYCGRG	3 cut(s)	22, 73, 1631
BmgBI	CACGTC	1 cut(s)	915
BmgT120I	GGNCC	2 cut(s)	359, 538
BmiI	GGNNCC	5 cut(s)	432, 459, 567, 1446, 1745
BmrFI	CCNGG	3 cut(s)	23, 24, 2145
BmsI	GCATC	3 cut(s)	1005, 1810, 1956
BpiI	GAAGAC	1 cut(s)	2124
BpmI	CTGGAG	6 cut(s)	1016, 1092, 1363, 1485, 1982, 2127
Bpu10I	CCTNAGC	6 cut(s)	82, 948, 1806, 1815, 1854, 2041
BpuEI	CTTGAG	3 cut(s)	1291, 1354, 1898
BpuMI	CCSGG	2 cut(s)	23, 24
Bsa29I	ATCGAT	1 cut(s)	1098
BsaAI	YACGTR	1 cut(s)	1694
BsaBI	GATNNNNATC	1 cut(s)	1094
BsaHI	GRCGYC	2 cut(s)	1744, 2121
BsaJI	CCNNGG	3 cut(s)	22, 756, 819
BsaWI	WCCGGW	2 cut(s)	454, 1729
Bsc4I	CCNNNNNNNGG	8 cut(s)	28, 29, 1134, 1180, 1250, 1508, 1617, 1753
Bse1I	ACTGG	7 cut(s)	112, 549, 999, 1075, 1345, 1380, 1622
Bse3DI	GCAATG	3 cut(s)	352, 884, 1901
Bse8I	GATNNNNATC	1 cut(s)	1094
BseAI	TCCGGA	2 cut(s)	454, 1729
BseBI	CCWGG	1 cut(s)	2145
BseCI	ATCGAT	1 cut(s)	1098
BseDI	CCNNGG	3 cut(s)	22, 756, 819
BseGI	GGATG	7 cut(s)	619, 671, 708, 1084, 1232, 1825, 2041
BseJI	GATNNNNATC	1 cut(s)	1094
BseLI	CCNNNNNNNGG	8 cut(s)	28, 29, 1134, 1180, 1250, 1508, 1617, 1753
BseMI	GCAATG	3 cut(s)	352, 884, 1901
BseMII	CTCAG	6 cut(s)	96, 930, 974, 1398, 1806, 1845
BseNI	ACTGG	7 cut(s)	112, 549, 999, 1075, 1345, 1380, 1622
BseRI	GAGGAG	2 cut(s)	983, 2126
BseSI	GKGCMC	2 cut(s)	186, 924
BseYI	CCCAGC	1 cut(s)	1554
Bsh1236I	CGCG	2 cut(s)	168, 861
BshFI	GGCC	6 cut(s)	5, 351, 361, 539, 1344, 1621
BshNI	GGYRCC	2 cut(s)	1444, 1743
BshVI	ATCGAT	1 cut(s)	1098
BsiHKAI	GWGCWC	7 cut(s)	130, 924, 1050, 1471, 1609, 1693, 2003
BsiHKCI	CYCGRG	3 cut(s)	22, 73, 1631
BsiSI	CCGG	4 cut(s)	23, 455, 1262, 1730
BslI	CCNNNNNNNGG	8 cut(s)	28, 29, 1134, 1180, 1250, 1508, 1617, 1753
BsmAI	GTCTC	3 cut(s)	1309, 1593, 1630
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	6 cut(s)	5, 351, 361, 539, 1344, 1621
BsoBI	CYCGRG	3 cut(s)	22, 73, 1631
Bsp13I	TCCGGA	2 cut(s)	454, 1729
Bsp1407I	TGTACA	1 cut(s)	2091
Bsp143I	GATC	6 cut(s)	662, 1258, 1534, 1726, 1957, 2023
Bsp19I	CCATGG	1 cut(s)	756
Bsp68I	TCGCGA	1 cut(s)	861
BspACI	CCGC	7 cut(s)	45, 166, 362, 1741, 1799, 1835, 2046
BspANI	GGCC	6 cut(s)	5, 351, 361, 539, 1344, 1621
BspCNI	CTCAG	6 cut(s)	95, 931, 975, 1399, 1807, 1846
BspDI	ATCGAT	1 cut(s)	1098
BspEI	TCCGGA	2 cut(s)	454, 1729
BspFNI	CGCG	2 cut(s)	168, 861
BspLI	GGNNCC	5 cut(s)	432, 459, 567, 1446, 1745
BspMAI	CTGCAG	3 cut(s)	1852, 1911, 1987
BspPI	GGATC	4 cut(s)	670, 1253, 1542, 1721
BspT107I	GGYRCC	2 cut(s)	1444, 1743
BsrBI	CCGCTC	1 cut(s)	1835
BsrDI	GCAATG	3 cut(s)	352, 884, 1901
BsrGI	TGTACA	1 cut(s)	2091
BsrI	ACTGG	7 cut(s)	112, 549, 999, 1075, 1345, 1380, 1622
BssECI	CCNNGG	3 cut(s)	22, 756, 819
BssMI	GATC	6 cut(s)	662, 1258, 1534, 1726, 1957, 2023
BssNI	GRCGYC	2 cut(s)	1744, 2121
BssT1I	CCWWGG	2 cut(s)	756, 819
Bst2UI	CCWGG	1 cut(s)	2145
Bst4CI	ACNGT	9 cut(s)	173, 531, 610, 1052, 1456, 1604, 1791, 1924, 2152
Bst6I	CTCTTC	3 cut(s)	331, 1862, 2181
BstACI	GRCGYC	2 cut(s)	1744, 2121
BstAPI	GCANNNNNTGC	2 cut(s)	1847, 1903
BstAUI	TGTACA	1 cut(s)	2091
BstBAI	YACGTR	1 cut(s)	1694
BstC8I	GCNNGC	4 cut(s)	60, 1592, 1833, 1899
BstDSI	CCRYGG	1 cut(s)	756
BstENI	CCTNNNNNAGG	1 cut(s)	1132
BstF5I	GGATG	7 cut(s)	619, 671, 708, 1084, 1232, 1825, 2041
BstFNI	CGCG	2 cut(s)	168, 861
BstH2I	RGCGCY	1 cut(s)	1747
BstHHI	GCGC	1 cut(s)	1746
BstKTI	GATC	6 cut(s)	665, 1261, 1537, 1729, 1960, 2026
BstMAI	GTCTC	3 cut(s)	1309, 1593, 1630
BstMBI	GATC	6 cut(s)	662, 1258, 1534, 1726, 1957, 2023
BstNI	CCWGG	1 cut(s)	2145
BstNSI	RCATGY	2 cut(s)	214, 368
BstSCI	CCNGG	3 cut(s)	21, 22, 2143
BstSFI	CTRYAG	4 cut(s)	1848, 1907, 1983, 2004
BstSLI	GKGCMC	2 cut(s)	186, 924
BstUI	CGCG	2 cut(s)	168, 861
BstV2I	GAAGAC	1 cut(s)	2124
BstX2I	RGATCY	3 cut(s)	662, 1726, 1957
BstYI	RGATCY	3 cut(s)	662, 1726, 1957
Bsu15I	ATCGAT	1 cut(s)	1098
BsuI	GTATCC	1 cut(s)	1330
BsuRI	GGCC	6 cut(s)	5, 351, 361, 539, 1344, 1621
BsuTUI	ATCGAT	1 cut(s)	1098
BtgI	CCRYGG	1 cut(s)	756
BtrI	CACGTC	1 cut(s)	915
BtsCI	GGATG	7 cut(s)	619, 671, 708, 1084, 1232, 1825, 2041
BtsI	GCAGTG	3 cut(s)	324, 483, 836
BtsIMutI	CAGTG	8 cut(s)	324, 483, 606, 836, 924, 1068, 1387, 1609
BtuMI	TCGCGA	1 cut(s)	861
Cac8I	GCNNGC	4 cut(s)	60, 1592, 1833, 1899
CaiI	CAGNNNCTG	3 cut(s)	1454, 1847, 2150
CfoI	GCGC	1 cut(s)	1746
Cfr13I	GGNCC	2 cut(s)	359, 538
Cfr9I	CCCGGG	1 cut(s)	22
ClaI	ATCGAT	1 cut(s)	1098
CseI	GACGC	2 cut(s)	104, 2129
Csp6I	GTAC	6 cut(s)	37, 636, 1445, 1642, 2092, 2148
CviAII	CATG	9 cut(s)	211, 365, 757, 868, 1175, 1237, 1245, 1595, 2095
CviQI	GTAC	6 cut(s)	37, 636, 1445, 1642, 2092, 2148
DinI	GGCGCC	1 cut(s)	1745
DpnI	GATC	6 cut(s)	664, 1260, 1536, 1728, 1959, 2025
DpnII	GATC	6 cut(s)	662, 1258, 1534, 1726, 1957, 2023
DraI	TTTAAA	1 cut(s)	1143
DrdI	GACNNNNNNGTC	2 cut(s)	403, 913
DseDI	GACNNNNNNGTC	2 cut(s)	403, 913
EaeI	YGGCCR	3 cut(s)	3, 349, 1342
Eam1104I	CTCTTC	3 cut(s)	331, 1862, 2181
EarI	CTCTTC	3 cut(s)	331, 1862, 2181
Ecl136II	GAGCTC	2 cut(s)	1469, 2001
Eco130I	CCWWGG	2 cut(s)	756, 819
Eco24I	GRGCYC	4 cut(s)	433, 1471, 2003, 2021
Eco32I	GATATC	2 cut(s)	337, 1096
Eco53kI	GAGCTC	2 cut(s)	1469, 2001
Eco57I	CTGAAG	1 cut(s)	263
Eco72I	CACGTG	1 cut(s)	1694
Eco88I	CYCGRG	3 cut(s)	22, 73, 1631
EcoICRI	GAGCTC	2 cut(s)	1469, 2001
EcoNI	CCTNNNNNAGG	1 cut(s)	1132
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	2143
EcoRV	GATATC	2 cut(s)	337, 1096
EcoT14I	CCWWGG	2 cut(s)	756, 819
EcoT22I	ATGCAT	1 cut(s)	300
EcoT38I	GRGCYC	4 cut(s)	433, 1471, 2003, 2021
EgeI	GGCGCC	1 cut(s)	1745
EheI	GGCGCC	1 cut(s)	1745
ErhI	CCWWGG	2 cut(s)	756, 819
FaeI	CATG	9 cut(s)	214, 368, 760, 871, 1178, 1240, 1248, 1598, 2098
FatI	CATG	9 cut(s)	210, 364, 756, 867, 1174, 1236, 1244, 1594, 2094
FblI	GTMKAC	2 cut(s)	389, 2007
FokI	GGATG	7 cut(s)	606, 658, 715, 1091, 1219, 1832, 2048
FriOI	GRGCYC	4 cut(s)	433, 1471, 2003, 2021
FspBI	CTAG	4 cut(s)	159, 330, 489, 1395
GlaI	GCGC	1 cut(s)	1745
GsaI	CCCAGC	1 cut(s)	1558
GsuI	CTGGAG	6 cut(s)	1016, 1092, 1363, 1485, 1982, 2127
HaeII	RGCGCY	1 cut(s)	1747
HaeIII	GGCC	6 cut(s)	5, 351, 361, 539, 1344, 1621
HapII	CCGG	4 cut(s)	23, 455, 1262, 1730
HgaI	GACGC	2 cut(s)	104, 2129
HhaI	GCGC	1 cut(s)	1746
Hin1I	GRCGYC	2 cut(s)	1744, 2121
Hin1II	CATG	9 cut(s)	214, 368, 760, 871, 1178, 1240, 1248, 1598, 2098
Hin6I	GCGC	1 cut(s)	1744
HinP1I	GCGC	1 cut(s)	1744
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HpaII	CCGG	4 cut(s)	23, 455, 1262, 1730
HphI	GGTGA	5 cut(s)	77, 592, 703, 1117, 1727
Hpy166II	GTNNAC	4 cut(s)	390, 922, 1125, 2008
Hpy188III	TCNNGA	8 cut(s)	455, 596, 660, 860, 1039, 1464, 1730, 1961
Hpy8I	GTNNAC	4 cut(s)	390, 922, 1125, 2008
Hpy99I	CGWCG	2 cut(s)	98, 391
HpyAV	CCTTC	9 cut(s)	21, 223, 471, 718, 857, 1036, 1423, 1502, 1821
HpyCH4III	ACNGT	9 cut(s)	173, 531, 610, 1052, 1456, 1604, 1791, 1924, 2152
HpyCH4IV	ACGT	2 cut(s)	914, 1693
HpySE526I	ACGT	2 cut(s)	914, 1693
Hsp92I	GRCGYC	2 cut(s)	1744, 2121
Hsp92II	CATG	9 cut(s)	214, 368, 760, 871, 1178, 1240, 1248, 1598, 2098
HspAI	GCGC	1 cut(s)	1744
KasI	GGCGCC	1 cut(s)	1743
Kpn2I	TCCGGA	2 cut(s)	454, 1729
KpnI	GGTACC	1 cut(s)	1448
Kzo9I	GATC	6 cut(s)	662, 1258, 1534, 1726, 1957, 2023
LmnI	GCTCC	8 cut(s)	133, 436, 1045, 1201, 1382, 1466, 1612, 1873
LweI	GCATC	3 cut(s)	1005, 1810, 1956
MaeI	CTAG	4 cut(s)	159, 330, 489, 1395
MaeII	ACGT	2 cut(s)	914, 1693
MaeIII	GTNAC	5 cut(s)	103, 161, 1020, 1791, 2066
MalI	GATC	6 cut(s)	664, 1260, 1536, 1728, 1959, 2025
MbiI	CCGCTC	1 cut(s)	1835
MboI	GATC	6 cut(s)	662, 1258, 1534, 1726, 1957, 2023
MfeI	CAATTG	1 cut(s)	1491
MflI	RGATCY	3 cut(s)	662, 1726, 1957
MlsI	TGGCCA	3 cut(s)	5, 351, 1344
MluCI	AATT	7 cut(s)	154, 192, 776, 1228, 1491, 1736, 2196
MluNI	TGGCCA	3 cut(s)	5, 351, 1344
Mly113I	GGCGCC	1 cut(s)	1744
MlyI	GAGTC	4 cut(s)	470, 1007, 1586, 2176
MmeI	TCCRAC	3 cut(s)	660, 1512, 2055
Mox20I	TGGCCA	3 cut(s)	5, 351, 1344
Mph1103I	ATGCAT	1 cut(s)	300
MroI	TCCGGA	2 cut(s)	454, 1729
MscI	TGGCCA	3 cut(s)	5, 351, 1344
MseI	TTAA	6 cut(s)	1142, 1685, 1707, 1953, 2052, 2203
MslI	CAYNNNNRTG	2 cut(s)	917, 1476
Msp20I	TGGCCA	3 cut(s)	5, 351, 1344
MspA1I	CMGCKG	1 cut(s)	1853
MspI	CCGG	4 cut(s)	23, 455, 1262, 1730
MspR9I	CCNGG	3 cut(s)	23, 24, 2145
MunI	CAATTG	1 cut(s)	1491
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	2145
MvnI	CGCG	2 cut(s)	168, 861
NarI	GGCGCC	1 cut(s)	1744
NciI	CCSGG	2 cut(s)	23, 24
NcoI	CCATGG	1 cut(s)	756
NdeII	GATC	6 cut(s)	662, 1258, 1534, 1726, 1957, 2023
NlaIII	CATG	9 cut(s)	214, 368, 760, 871, 1178, 1240, 1248, 1598, 2098
NlaIV	GGNNCC	5 cut(s)	432, 459, 567, 1446, 1745
NmeAIII	GCCGAG	1 cut(s)	2149
NruI	TCGCGA	1 cut(s)	861
NsiI	ATGCAT	1 cut(s)	300
NspI	RCATGY	2 cut(s)	214, 368
OliI	CACNNNNGTG	1 cut(s)	917
PciI	ACATGT	1 cut(s)	210
PctI	GAATGC	1 cut(s)	74
PleI	GAGTC	4 cut(s)	470, 1006, 1585, 2175
PluTI	GGCGCC	1 cut(s)	1747
PmaCI	CACGTG	1 cut(s)	1694
PmlI	CACGTG	1 cut(s)	1694
PpsI	GAGTC	4 cut(s)	470, 1006, 1585, 2175
Ppu21I	YACGTR	1 cut(s)	1694
PscI	ACATGT	1 cut(s)	210
Psp124BI	GAGCTC	2 cut(s)	1471, 2003
Psp6I	CCWGG	1 cut(s)	2143
PspCI	CACGTG	1 cut(s)	1694
PspFI	CCCAGC	1 cut(s)	1554
PspGI	CCWGG	1 cut(s)	2143
PspN4I	GGNNCC	5 cut(s)	432, 459, 567, 1446, 1745
PspPI	GGNCC	2 cut(s)	359, 538
PstI	CTGCAG	3 cut(s)	1852, 1911, 1987
PstNI	CAGNNNCTG	3 cut(s)	1454, 1847, 2150
PsuI	RGATCY	3 cut(s)	662, 1726, 1957
PvuII	CAGCTG	1 cut(s)	1853
RruI	TCGCGA	1 cut(s)	861
RsaI	GTAC	6 cut(s)	38, 637, 1446, 1643, 2093, 2149
RsaNI	GTAC	6 cut(s)	37, 636, 1445, 1642, 2092, 2148
RseI	CAYNNNNRTG	2 cut(s)	917, 1476
SacI	GAGCTC	2 cut(s)	1471, 2003
SalI	GTCGAC	1 cut(s)	388
SaqAI	TTAA	6 cut(s)	1142, 1685, 1707, 1953, 2052, 2203
Sau3AI	GATC	6 cut(s)	662, 1258, 1534, 1726, 1957, 2023
Sau96I	GGNCC	2 cut(s)	359, 538
SchI	GAGTC	4 cut(s)	470, 1007, 1586, 2176
ScrFI	CCNGG	3 cut(s)	23, 24, 2145
SfaNI	GCATC	3 cut(s)	1005, 1810, 1956
SfcI	CTRYAG	4 cut(s)	1848, 1907, 1983, 2004
SfoI	GGCGCC	1 cut(s)	1745
SmaI	CCCGGG	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	917, 1476
SmlI	CTYRAG	3 cut(s)	1306, 1369, 1877
SmoI	CTYRAG	3 cut(s)	1306, 1369, 1877
Sse9I	AATT	7 cut(s)	154, 192, 776, 1228, 1491, 1736, 2196
SsiI	CCGC	7 cut(s)	45, 166, 362, 1741, 1799, 1835, 2046
SspDI	GGCGCC	1 cut(s)	1743
SspMI	CTAG	4 cut(s)	159, 330, 489, 1395
SstI	GAGCTC	2 cut(s)	1471, 2003
StyD4I	CCNGG	3 cut(s)	21, 22, 2143
StyI	CCWWGG	2 cut(s)	756, 819
TaaI	ACNGT	9 cut(s)	173, 531, 610, 1052, 1456, 1604, 1791, 1924, 2152
TaiI	ACGT	2 cut(s)	917, 1696
TaqI	TCGA	6 cut(s)	93, 369, 389, 1098, 1506, 1825
TasI	AATT	7 cut(s)	154, 192, 776, 1228, 1491, 1736, 2196
TatI	WGTACW	2 cut(s)	1641, 2091
TauI	GCSGC	3 cut(s)	364, 1744, 2049
Tru1I	TTAA	6 cut(s)	1142, 1685, 1707, 1953, 2052, 2203
Tru9I	TTAA	6 cut(s)	1142, 1685, 1707, 1953, 2052, 2203
TscAI	CASTG	8 cut(s)	324, 490, 613, 843, 924, 1075, 1387, 1609
TspDTI	ATGAA	7 cut(s)	518, 660, 942, 1221, 1227, 1284, 2111
TspGWI	ACGGA	4 cut(s)	463, 1147, 1786, 1879
TspMI	CCCGGG	1 cut(s)	22
TspRI	CASTG	8 cut(s)	324, 490, 613, 843, 924, 1075, 1387, 1609
VneI	GTGCAC	1 cut(s)	920
XagI	CCTNNNNNAGG	1 cut(s)	1132
XapI	RAATTY	3 cut(s)	154, 192, 776
XceI	RCATGY	2 cut(s)	214, 368
XmaI	CCCGGG	1 cut(s)	22
XmiI	GTMKAC	2 cut(s)	389, 2007
XspI	CTAG	4 cut(s)	159, 330, 489, 1395
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.