Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002568

Physical Location & Seq

Genomic Coordinates Forward (+)

991596 .. 996385

Gene Structure 4790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1016100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGGCCAAGAAGAACAAGAACCCGGGAAGGGGAGGGTACTATGGCAGTGCTTTTGGGCAGGCTGGTGAATGCTCCGGTAGCTCAGGAAGAATCGACGCAGAAGTTACTGGCTCGGAGGATTCAAGTGCTCCGACGAGGAAATCTATTAGTTTGAATTCTAGTAACCGTGACAGTTTTGGTGTGCCCATACAAATACTTCCCCTGTCAAACATGCTGTCATCAGAGAAGAAGGATTTGAAACATAGGTTGAATATGGAACTTGAACAGATACGAATACTTCGGAAGAAATTTGAAATGCATAGAGCCAATGGTGTTGCAGTGTCCTCTTCTAGTGATATCATCAGCAATGGCCAGAATGGGCCGCATGTCAATAATTTTAGAAAGTCGTCCACAATGATTTCTGAGCCAGGTAAAAGACTGAATCCTGGGGCTTCAAAAGCACAGAAACGGAATCCGGAAACTTCTGGGAGGTTTGACTCTAGGACTGCTAGTGTGATTCTTATGAAACAATGTGAGGCACTATTGAAACGGTTGATGTCCCATCAATCCAGTTGGCTTTTCAATGAACCTGTTGATGTGGTGAAGTTGAACATTCCTGATTATTTCACTGTTATTAAACATCCAATGGACTTGGGTACAATAAAGAGCAAGGTAGCTTCAGGATCTTACTCAACCCCACTGGAGTTTGCTGCTGATGTCAGGATGACTTTCACCAATGCTATGACGTACAATCCACCACAAAATAAGGTCTATAACATGGCTGATACTCTTAGCAAATTTTTTGAAGTCAGGTGGAAAACCATTGAGAAAAAACTGCCAAAGGCTGATTGCCAACAACCGCCAACTAAATCTGGTCCTCATGAAGGCATAGAAACTCCTAAACCATTACCCCCCTCAAAAAAGAGGACTATCACGTCAGTGCACAATGAAGTCAAGTCTGAGCCTCCTAAGCGAGTAATGACAACGGAGGAGAAGCTCAATCTGAGCAGAGAGTTGGAGTCTTTGATTGGAGAAATGCCCTTACGCATCATTGATTTCTTGAAGGAACATAGTTCAAATGGAAAGGACTCTGGTGAGGATGAGATCGAGATTGATATTGATGTTCTAAGTGATGATACCTTGTTCACATTACGGAGGCTTTTAAATGAGTATTTGCAAGAGAAACAAAAGAACCATGTAAGCGCTGAACCTTGTTCAATGGAGCTTGTCAATGAATCAGGGTTGAGCAATTCATCCATGCAGCCATGTAAAGGGAATGACCCGGCTGATGAAGATGTTGATATTGGTGGAAATGAGCCTCCTGTCTCAAGCTATCCTCCTGTAGAGATAGAAATGGATACTGGCCGTAAAAGTAGTAAAGCCATCAGCTCAAGCAGCTCCAGTGATTCAGATTCTAGCAGTTCTGAGAGTGAATGTGATGATGTGAAGGCTGGAAGTCCGGTACCAGAAACTGTGGGTTCTGGAACTCATTTAGATGAAAAGACAACAATTGATAATCCACTCGAAGGAAATCATTCTGATAGTGGGTTGGATCAAGTTGAACAAAGTTCCCAGCAGAAGCCAAGTCCTGTTGAGTCAGATTGTTGCCAGCATGGAGACAGTGCTCCTCCAGAGAGGTCAGTCTCCCCTGAGAAGCAGTACAGGGCTGCTCTATTGAAGAATCGTTTTGCTGATACCATTCTAAGAGCACGAGAGAAAACACTTAATCAGGGTGATAAAGAAGATCCTGAGAAATTGCGGAGGCAGAGGGAGGAACTTGAATTGCAACAGAAGAAAGAGAAAGCGCGGTTACAAGCGGAAGCTAAGGCTGCTGAGGATGCTCGAAGGCGAGCAGAAGCAGAAGCTGCAGCTGAGGCTAAACGGAAGAGGGAGCTTGAGAGAGAAGCAGCAAGGCAGGCATTGATGCAGATAGAAAAGACTGTTGAAATCAATGAGAACTCTCGGTTTCTTAAAGATCTGGAGATGCTTAGAACTGCCCCTGCGGAGCAGCTACCGAGCTCTGTAGACGAAACGAGCCCTGATCACTCGCAGGAATGCTTAGGCGGCTTTAAGTTTGGGGGGAGTAACCCGTTGGAACAACTTGGCCTGTACATGAAAGACGATGAAGAGGAGGAAGACGCGGATCCTGTAAGTAGTGTTCCTCCAAGTCCTGTAAGTGCTTCTATAAGTCCTGTAAATGATATAGAAGAAGGAGAAATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

735

Amino Acids

81.03

Weight (kDa)

5.26

Isoelectric Point (pI)

61.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	171 - 255	4.4e-21	Bromodomain
BET	PF17035	319 - 382	5.2e-17	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01770 AT3G01770 AT3G27260 AT3G27260 AT3G27260 AT3G27260 AT5G14270 AT5G14270 AT5G14270
fragaria_vesca	FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920
malus_domestica	MD09G1016100.v1.1 MD17G1016600.v1.1
prunus_persica	Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1
pyrus_communis	pycom111g01310 pycom17g01330
rosa_chinensis	RchiOBHm_Chr2g0174631
rosa_laevigata	RLG00000022278
rosa_multiflora	Rmu_sc0003649.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077990
rosa_rugosa	Rorug02G0578200 Rorug02G0578300 Rorug02G0578400 Rorug02G0578500
rosa_samantha	Rh2AG659500 Rh2BG670300 Rh2CG633600 Rh2DG684000
rosa_wichuraiana	Rw2G054010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	913
Acc65I	GGTACC	1 cut(s)	1441
AccB1I	GGYRCC	1 cut(s)	1441
AccI	GTMKAC	1 cut(s)	2004
AccII	CGCG	2 cut(s)	1786, 2120
AccIII	TCCGGA	1 cut(s)	454
AciI	CCGC	8 cut(s)	362, 839, 1738, 1786, 1796, 1982, 2043, 2120
AclWI	GGATC	5 cut(s)	670, 1539, 1718, 2117, 2130
AcoI	YGGCCR	3 cut(s)	3, 349, 1342
AcsI	RAATTY	3 cut(s)	154, 287, 776
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	6 cut(s)	38, 637, 728, 1443, 1640, 2090
AfeI	AGCGCT	1 cut(s)	1183
AfiI	CCNNNNNNNGG	5 cut(s)	28, 29, 863, 1250, 1505
AjiI	CACGTC	1 cut(s)	915
AjnI	CCWGG	2 cut(s)	406, 424
AleI	CACNNNNGTG	1 cut(s)	917
Alw21I	GWGCWC	5 cut(s)	130, 924, 1606, 1690, 2000
Alw26I	GTCTC	3 cut(s)	1309, 1590, 1627
Alw44I	GTGCAC	1 cut(s)	920
AlwI	GGATC	5 cut(s)	670, 1539, 1718, 2117, 2130
AlwNI	CAGNNNCTG	2 cut(s)	1451, 1844
Ama87I	CYCGRG	1 cut(s)	22
Aor13HI	TCCGGA	1 cut(s)	454
Aor51HI	AGCGCT	1 cut(s)	1183
AoxI	GGCC	5 cut(s)	3, 349, 359, 1342, 2083
ApaLI	GTGCAC	1 cut(s)	920
ApeKI	GCWGC	9 cut(s)	689, 1240, 1374, 1646, 1808, 1844, 1847, 1886, 1987
ApoI	RAATTY	3 cut(s)	154, 287, 776
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
Asp700I	GAANNNNTTC	1 cut(s)	1513
Asp718I	GGTACC	1 cut(s)	1441
AspLEI	GCGC	2 cut(s)	1184, 1786
AspS9I	GGNCC	2 cut(s)	359, 854
AsuC2I	CCSGG	3 cut(s)	23, 24, 1262
AsuHPI	GGTGA	5 cut(s)	77, 592, 703, 1085, 1724
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	854
BaeGI	GKGCMC	2 cut(s)	186, 924
BalI	TGGCCA	2 cut(s)	5, 351
BamHI	GGATCC	1 cut(s)	2122
BanI	GGYRCC	1 cut(s)	1441
BanII	GRGCYC	2 cut(s)	2000, 2018
BauI	CACGAG	1 cut(s)	1689
BbsI	GAAGAC	1 cut(s)	2121
Bbv12I	GWGCWC	5 cut(s)	130, 924, 1606, 1690, 2000
BbvCI	CCTCAGC	2 cut(s)	1812, 1851
BbvI	GCAGC	9 cut(s)	676, 1252, 1386, 1633, 1795, 1831, 1859, 1898, 1999
BccI	CCATC	2 cut(s)	549, 1370
BceAI	ACGGC	1 cut(s)	1329
BciT130I	CCWGG	2 cut(s)	408, 426
BciVI	GTATCC	1 cut(s)	1330
BclI	TGATCA	1 cut(s)	2020
BcnI	CCSGG	3 cut(s)	23, 24, 1262
BcoDI	GTCTC	3 cut(s)	1309, 1590, 1627
BfaI	CTAG	5 cut(s)	159, 330, 480, 489, 1395
BfmI	CTRYAG	3 cut(s)	1320, 1845, 2001
BfoI	RGCGCY	1 cut(s)	1185
BfuI	GTATCC	1 cut(s)	1330
BglII	AGATCT	1 cut(s)	1954
Bme1390I	CCNGG	5 cut(s)	23, 24, 408, 426, 1262
Bme18I	GGWCC	1 cut(s)	854
BmeT110I	CYCGRG	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	915
BmgT120I	GGNCC	2 cut(s)	359, 854
BmiI	GGNNCC	2 cut(s)	1443, 2124
BmrFI	CCNGG	5 cut(s)	23, 24, 408, 426, 1262
BmsI	GCATC	4 cut(s)	1035, 1807, 1893, 1953
BpiI	GAAGAC	1 cut(s)	2121
BpmI	CTGGAG	4 cut(s)	701, 1363, 1593, 1979
Bpu10I	CCTNAGC	6 cut(s)	82, 948, 1803, 1812, 1851, 2038
BpuEI	CTTGAG	3 cut(s)	1291, 1354, 1895
BpuMI	CCSGG	3 cut(s)	23, 24, 1262
BsaJI	CCNNGG	2 cut(s)	22, 425
BsaWI	WCCGGW	3 cut(s)	74, 454, 1438
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 29, 863, 1250, 1505
Bse1I	ACTGG	5 cut(s)	112, 549, 684, 1345, 1380
Bse3DI	GCAATG	1 cut(s)	352
BseAI	TCCGGA	1 cut(s)	454
BseBI	CCWGG	2 cut(s)	408, 426
BseDI	CCNNGG	2 cut(s)	22, 425
BseGI	GGATG	5 cut(s)	619, 708, 1084, 1232, 1822
BseLI	CCNNNNNNNGG	5 cut(s)	28, 29, 863, 1250, 1505
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	9 cut(s)	96, 393, 930, 974, 1395, 1620, 1719, 1803, 1842
BseNI	ACTGG	5 cut(s)	112, 549, 684, 1345, 1380
BseRI	GAGGAG	3 cut(s)	983, 1596, 2123
BseSI	GKGCMC	2 cut(s)	186, 924
BseXI	GCAGC	9 cut(s)	676, 1252, 1386, 1633, 1795, 1831, 1859, 1898, 1999
BseYI	CCCAGC	1 cut(s)	1551
Bsh1236I	CGCG	2 cut(s)	1786, 2120
BshFI	GGCC	5 cut(s)	5, 351, 361, 1344, 2085
BshNI	GGYRCC	1 cut(s)	1441
BsiHKAI	GWGCWC	5 cut(s)	130, 924, 1606, 1690, 2000
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	5 cut(s)	23, 75, 455, 1262, 1439
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	5 cut(s)	28, 29, 863, 1250, 1505
BsmAI	GTCTC	3 cut(s)	1309, 1590, 1627
BsmFI	GGGAC	1 cut(s)	523
BsmI	GAATGC	2 cut(s)	74, 2039
BsnI	GGCC	5 cut(s)	5, 351, 361, 1344, 2085
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	7 cut(s)	130, 186, 924, 1606, 1690, 2000, 2018
Bsp13I	TCCGGA	1 cut(s)	454
Bsp1407I	TGTACA	1 cut(s)	2088
Bsp143I	GATC	7 cut(s)	662, 1083, 1531, 1723, 1954, 2020, 2122
BspACI	CCGC	8 cut(s)	362, 839, 1738, 1786, 1796, 1982, 2043, 2120
BspANI	GGCC	5 cut(s)	5, 351, 361, 1344, 2085
BspCNI	CTCAG	9 cut(s)	95, 394, 931, 975, 1396, 1621, 1720, 1804, 1843
BspEI	TCCGGA	1 cut(s)	454
BspFNI	CGCG	2 cut(s)	1786, 2120
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	2 cut(s)	1443, 2124
BspMAI	CTGCAG	1 cut(s)	1849
BspPI	GGATC	5 cut(s)	670, 1539, 1718, 2117, 2130
BspT107I	GGYRCC	1 cut(s)	1441
BsrDI	GCAATG	1 cut(s)	352
BsrGI	TGTACA	1 cut(s)	2088
BsrI	ACTGG	5 cut(s)	112, 549, 684, 1345, 1380
BssECI	CCNNGG	2 cut(s)	22, 425
BssMI	GATC	7 cut(s)	662, 1083, 1531, 1723, 1954, 2020, 2122
BssSI	CACGAG	1 cut(s)	1689
Bst2BI	CACGAG	1 cut(s)	1689
Bst2UI	CCWGG	2 cut(s)	408, 426
Bst4CI	ACNGT	7 cut(s)	167, 173, 531, 610, 1453, 1601, 1921
Bst6I	CTCTTC	3 cut(s)	331, 1859, 2100
BstAPI	GCANNNNNTGC	1 cut(s)	1844
BstAUI	TGTACA	1 cut(s)	2088
BstC8I	GCNNGC	4 cut(s)	60, 1589, 1830, 1896
BstENI	CCTNNNNNAGG	1 cut(s)	861
BstF5I	GGATG	5 cut(s)	619, 708, 1084, 1232, 1822
BstFNI	CGCG	2 cut(s)	1786, 2120
BstH2I	RGCGCY	1 cut(s)	1185
BstHHI	GCGC	2 cut(s)	1184, 1786
BstKTI	GATC	7 cut(s)	665, 1086, 1534, 1726, 1957, 2023, 2125
BstMAI	GTCTC	3 cut(s)	1309, 1590, 1627
BstMBI	GATC	7 cut(s)	662, 1083, 1531, 1723, 1954, 2020, 2122
BstNI	CCWGG	2 cut(s)	408, 426
BstNSI	RCATGY	2 cut(s)	214, 368
BstSCI	CCNGG	5 cut(s)	21, 22, 406, 424, 1260
BstSFI	CTRYAG	3 cut(s)	1320, 1845, 2001
BstSLI	GKGCMC	2 cut(s)	186, 924
BstUI	CGCG	2 cut(s)	1786, 2120
BstV1I	GCAGC	9 cut(s)	676, 1252, 1386, 1633, 1795, 1831, 1859, 1898, 1999
BstV2I	GAAGAC	1 cut(s)	2121
BstX2I	RGATCY	4 cut(s)	662, 1723, 1954, 2122
BstYI	RGATCY	4 cut(s)	662, 1723, 1954, 2122
BsuI	GTATCC	1 cut(s)	1330
BsuRI	GGCC	5 cut(s)	5, 351, 361, 1344, 2085
BtrI	CACGTC	1 cut(s)	915
BtsCI	GGATG	5 cut(s)	619, 708, 1084, 1232, 1822
BtsI	GCAGTG	2 cut(s)	52, 324
BtsIMutI	CAGTG	7 cut(s)	52, 324, 606, 677, 924, 1387, 1606
Cac8I	GCNNGC	4 cut(s)	60, 1589, 1830, 1896
CaiI	CAGNNNCTG	2 cut(s)	1451, 1844
CciI	TCATGA	1 cut(s)	859
CfoI	GCGC	2 cut(s)	1184, 1786
Cfr13I	GGNCC	2 cut(s)	359, 854
Cfr9I	CCCGGG	1 cut(s)	22
CseI	GACGC	2 cut(s)	104, 2126
Csp6I	GTAC	6 cut(s)	37, 636, 727, 1442, 1639, 2089
CviAII	CATG	9 cut(s)	211, 365, 757, 860, 1175, 1237, 1245, 1592, 2092
CviQI	GTAC	6 cut(s)	37, 636, 727, 1442, 1639, 2089
DpnI	GATC	7 cut(s)	664, 1085, 1533, 1725, 1956, 2022, 2124
DpnII	GATC	7 cut(s)	662, 1083, 1531, 1723, 1954, 2020, 2122
DraI	TTTAAA	1 cut(s)	1143
DrdI	GACNNNNNNGTC	1 cut(s)	913
DseDI	GACNNNNNNGTC	1 cut(s)	913
EaeI	YGGCCR	3 cut(s)	3, 349, 1342
Eam1104I	CTCTTC	3 cut(s)	331, 1859, 2100
EarI	CTCTTC	3 cut(s)	331, 1859, 2100
Ecl136II	GAGCTC	1 cut(s)	1998
Eco24I	GRGCYC	2 cut(s)	2000, 2018
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	854
Eco47III	AGCGCT	1 cut(s)	1183
Eco53kI	GAGCTC	1 cut(s)	1998
Eco57I	CTGAAG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	1998
EcoNI	CCTNNNNNAGG	1 cut(s)	861
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	406, 424
EcoRV	GATATC	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	300
EcoT38I	GRGCYC	2 cut(s)	2000, 2018
FaeI	CATG	9 cut(s)	214, 368, 760, 863, 1178, 1240, 1248, 1595, 2095
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	9 cut(s)	210, 364, 756, 859, 1174, 1236, 1244, 1591, 2091
FbaI	TGATCA	1 cut(s)	2020
FblI	GTMKAC	1 cut(s)	2004
FokI	GGATG	5 cut(s)	606, 715, 1091, 1219, 1829
FriOI	GRGCYC	2 cut(s)	2000, 2018
FspBI	CTAG	5 cut(s)	159, 330, 480, 489, 1395
GlaI	GCGC	2 cut(s)	1183, 1785
GsaI	CCCAGC	1 cut(s)	1555
GsuI	CTGGAG	4 cut(s)	701, 1363, 1593, 1979
HaeII	RGCGCY	1 cut(s)	1185
HaeIII	GGCC	5 cut(s)	5, 351, 361, 1344, 2085
HapII	CCGG	5 cut(s)	23, 75, 455, 1262, 1439
HgaI	GACGC	2 cut(s)	104, 2126
HhaI	GCGC	2 cut(s)	1184, 1786
Hin1II	CATG	9 cut(s)	214, 368, 760, 863, 1178, 1240, 1248, 1595, 2095
Hin6I	GCGC	2 cut(s)	1182, 1784
HinP1I	GCGC	2 cut(s)	1182, 1784
HpaII	CCGG	5 cut(s)	23, 75, 455, 1262, 1439
HphI	GGTGA	5 cut(s)	77, 592, 703, 1085, 1724
Hpy166II	GTNNAC	4 cut(s)	390, 922, 1125, 2005
Hpy8I	GTNNAC	4 cut(s)	390, 922, 1125, 2005
Hpy99I	CGWCG	2 cut(s)	98, 136
HpyAV	CCTTC	8 cut(s)	21, 223, 857, 1036, 1420, 1499, 1818, 2183
HpyCH4III	ACNGT	7 cut(s)	167, 173, 531, 610, 1453, 1601, 1921
HpyCH4IV	ACGT	2 cut(s)	725, 914
HpyCH4V	TGCA	8 cut(s)	298, 317, 922, 1156, 1240, 1765, 1847, 1906
HpySE526I	ACGT	2 cut(s)	725, 914
Hsp92II	CATG	9 cut(s)	214, 368, 760, 863, 1178, 1240, 1248, 1595, 2095
HspAI	GCGC	2 cut(s)	1182, 1784
Kpn2I	TCCGGA	1 cut(s)	454
KpnI	GGTACC	1 cut(s)	1445
Ksp22I	TGATCA	1 cut(s)	2020
Kzo9I	GATC	7 cut(s)	662, 1083, 1531, 1723, 1954, 2020, 2122
LmnI	GCTCC	7 cut(s)	77, 133, 1201, 1382, 1609, 1870, 1984
Lsp1109I	GCAGC	9 cut(s)	676, 1252, 1386, 1633, 1795, 1831, 1859, 1898, 1999
LweI	GCATC	4 cut(s)	1035, 1807, 1893, 1953
MaeI	CTAG	5 cut(s)	159, 330, 480, 489, 1395
MaeII	ACGT	2 cut(s)	725, 914
MaeIII	GTNAC	5 cut(s)	103, 161, 167, 1788, 2063
MalI	GATC	7 cut(s)	664, 1085, 1533, 1725, 1956, 2022, 2124
MboI	GATC	7 cut(s)	662, 1083, 1531, 1723, 1954, 2020, 2122
MfeI	CAATTG	1 cut(s)	1488
MflI	RGATCY	4 cut(s)	662, 1723, 1954, 2122
MhlI	GDGCHC	7 cut(s)	130, 186, 924, 1606, 1690, 2000, 2018
MlsI	TGGCCA	2 cut(s)	5, 351
MluCI	AATT	9 cut(s)	154, 287, 373, 776, 1228, 1488, 1733, 1760, 2196
MluNI	TGGCCA	2 cut(s)	5, 351
MlyI	GAGTC	4 cut(s)	470, 1007, 1061, 1583
MmeI	TCCRAC	4 cut(s)	155, 975, 1509, 2052
Mox20I	TGGCCA	2 cut(s)	5, 351
Mph1103I	ATGCAT	1 cut(s)	300
MroI	TCCGGA	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	1513
MscI	TGGCCA	2 cut(s)	5, 351
MseI	TTAA	6 cut(s)	615, 1142, 1704, 1950, 2049, 2203
MslI	CAYNNNNRTG	2 cut(s)	917, 1473
Msp20I	TGGCCA	2 cut(s)	5, 351
MspA1I	CMGCKG	1 cut(s)	1850
MspI	CCGG	5 cut(s)	23, 75, 455, 1262, 1439
MspR9I	CCNGG	5 cut(s)	23, 24, 408, 426, 1262
MunI	CAATTG	1 cut(s)	1488
Mva1269I	GAATGC	2 cut(s)	74, 2039
MvaI	CCWGG	2 cut(s)	408, 426
MvnI	CGCG	2 cut(s)	1786, 2120
NciI	CCSGG	3 cut(s)	23, 24, 1262
NdeII	GATC	7 cut(s)	662, 1083, 1531, 1723, 1954, 2020, 2122
NlaIII	CATG	9 cut(s)	214, 368, 760, 863, 1178, 1240, 1248, 1595, 2095
NlaIV	GGNNCC	2 cut(s)	1443, 2124
NmuCI	GTSAC	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	300
NspI	RCATGY	2 cut(s)	214, 368
OliI	CACNNNNGTG	1 cut(s)	917
PagI	TCATGA	1 cut(s)	859
PctI	GAATGC	2 cut(s)	74, 2039
PdmI	GAANNNNTTC	1 cut(s)	1513
PfeI	GAWTC	9 cut(s)	90, 119, 421, 451, 496, 1214, 1385, 1391, 1660
PleI	GAGTC	4 cut(s)	470, 1006, 1061, 1582
PpsI	GAGTC	4 cut(s)	470, 1006, 1061, 1582
Psp124BI	GAGCTC	1 cut(s)	2000
Psp6I	CCWGG	2 cut(s)	406, 424
PspFI	CCCAGC	1 cut(s)	1551
PspGI	CCWGG	2 cut(s)	406, 424
PspN4I	GGNNCC	2 cut(s)	1443, 2124
PspPI	GGNCC	2 cut(s)	359, 854
PsrI	GAACNNNNNNTAC	2 cut(s)	2121, 2153
PstI	CTGCAG	1 cut(s)	1849
PstNI	CAGNNNCTG	2 cut(s)	1451, 1844
PsuI	RGATCY	4 cut(s)	662, 1723, 1954, 2122
PvuII	CAGCTG	1 cut(s)	1850
RsaI	GTAC	6 cut(s)	38, 637, 728, 1443, 1640, 2090
RsaNI	GTAC	6 cut(s)	37, 636, 727, 1442, 1639, 2089
RseI	CAYNNNNRTG	2 cut(s)	917, 1473
SacI	GAGCTC	1 cut(s)	2000
SaqAI	TTAA	6 cut(s)	615, 1142, 1704, 1950, 2049, 2203
Sau3AI	GATC	7 cut(s)	662, 1083, 1531, 1723, 1954, 2020, 2122
Sau96I	GGNCC	2 cut(s)	359, 854
SchI	GAGTC	4 cut(s)	470, 1007, 1061, 1583
ScrFI	CCNGG	5 cut(s)	23, 24, 408, 426, 1262
SduI	GDGCHC	7 cut(s)	130, 186, 924, 1606, 1690, 2000, 2018
SfaNI	GCATC	4 cut(s)	1035, 1807, 1893, 1953
SfcI	CTRYAG	3 cut(s)	1320, 1845, 2001
SinI	GGWCC	1 cut(s)	854
SmaI	CCCGGG	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	917, 1473
SmlI	CTYRAG	3 cut(s)	1306, 1369, 1874
SmoI	CTYRAG	3 cut(s)	1306, 1369, 1874
Sse9I	AATT	9 cut(s)	154, 287, 373, 776, 1228, 1488, 1733, 1760, 2196
SsiI	CCGC	8 cut(s)	362, 839, 1738, 1786, 1796, 1982, 2043, 2120
SspMI	CTAG	5 cut(s)	159, 330, 480, 489, 1395
SstI	GAGCTC	1 cut(s)	2000
StyD4I	CCNGG	5 cut(s)	21, 22, 406, 424, 1260
TaaI	ACNGT	7 cut(s)	167, 173, 531, 610, 1453, 1601, 1921
TaiI	ACGT	2 cut(s)	728, 917
TaqI	TCGA	4 cut(s)	93, 1086, 1503, 1822
TasI	AATT	9 cut(s)	154, 287, 373, 776, 1228, 1488, 1733, 1760, 2196
TatI	WGTACW	2 cut(s)	1638, 2088
TauI	GCSGC	2 cut(s)	364, 2046
TfiI	GAWTC	9 cut(s)	90, 119, 421, 451, 496, 1214, 1385, 1391, 1660
Tru1I	TTAA	6 cut(s)	615, 1142, 1704, 1950, 2049, 2203
Tru9I	TTAA	6 cut(s)	615, 1142, 1704, 1950, 2049, 2203
TscAI	CASTG	7 cut(s)	52, 324, 613, 684, 924, 1387, 1606
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	9 cut(s)	689, 1240, 1374, 1646, 1808, 1844, 1847, 1886, 1987
Tsp45I	GTSAC	1 cut(s)	167
TspGWI	ACGGA	4 cut(s)	463, 980, 1147, 1876
TspMI	CCCGGG	1 cut(s)	22
TspRI	CASTG	7 cut(s)	52, 324, 613, 684, 924, 1387, 1606
VneI	GTGCAC	1 cut(s)	920
VpaK11BI	GGWCC	1 cut(s)	854
XagI	CCTNNNNNAGG	1 cut(s)	861
XapI	RAATTY	3 cut(s)	154, 287, 776
XceI	RCATGY	2 cut(s)	214, 368
XmaI	CCCGGG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	2004
XmnI	GAANNNNTTC	1 cut(s)	1513
XspI	CTAG	5 cut(s)	159, 330, 480, 489, 1395
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.