Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002568

Physical Location & Seq

Genomic Coordinates Forward (+)

70193186 .. 70194484

Gene Structure 1299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0578400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGTTTTCACCTTTTTACAACAGTTGGAACGAGTCCAAAAGAGAATTGCAGACCGCAAGATGAAGATCCAAGTGAGCGAGGCAGCTGTTCAGCTTCTTGGAAATCTCGGCTACGATCCAAACTACGGTGCTAGGCCAGTCAAGCGAGTGATTCAGCAATATGTAGAAAATGAGCTTGCCAAGGGCATCTTGAGAGGAGAGTTCAAAGAAGAAGACACCATTTTGGTCGACACAGAGATCACGGCGTTTGCCAATGGCCAGCTACCCCAGCAAAAGCTATTCTTCAAGAAGCTTGAAACTGGTTCAGAATCTCCTGCAGCAGAGAACTCCGTTGACAGGGTAAATCTGGAGATCCAGCAGGGTGAACGAGAGTATGATCTTAACCATGCTGCTAAGCTGAAGTATGGGAGTCTGAATTCCTTACAGTGCCAACTCCTCAGTGCTGAAAAGGAGCTCGATGAGTATATCAGGTCTGGGAAATCAATGCTGAGAGAGGAAGTTACTGGAAATGACATTTCTGAAATTGTCAGCAAGTGGACTGGTATTCCTGTTTCCAAGCTTCTACAGTCAGAAAGGGAAAAGCTCTTGCATTTGGAGGAAGAGCTGCATAAACGTGTTGTAGGACAGGATCCTGCAGTGAAATCAGTAGCTGAAGCTATTCAGCGGTCTCGAGCAGGTCTCTTAGATCCTCATCGCCCGATCGCTAGTTTCATGTTCATGGGCCCCACCGGTGTAGGGAAGACAGAACTAGCCAAGACCCTTGCTTCCTACATGTTCAACACTGAAGAAGCTCTTGCTAGAATTGATATGAGTGAGTACATGGAAAAGCATGCTGTCTCAAGACTGATAGGTGCTCCACCTGTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

289

Amino Acids

32.49

Weight (kDa)

5.88

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ClpB_D2-small	PF10431	7 - 76	8.4e-23	C-terminal, D2-small domain, of ClpB protein
AAA_2	PF07724	232 - 288	4.8e-18	AAA domain (Cdc48 subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01770 AT3G01770 AT3G27260 AT3G27260 AT3G27260 AT3G27260 AT5G14270 AT5G14270 AT5G14270
fragaria_vesca	FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920
malus_domestica	MD09G1016100.v1.1 MD17G1016600.v1.1
prunus_persica	Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1
pyrus_communis	pycom111g01310 pycom17g01330
rosa_chinensis	RchiOBHm_Chr2g0174631
rosa_laevigata	RLG00000022278
rosa_multiflora	Rmu_sc0003649.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077990
rosa_rugosa	Rorug02G0578200 Rorug02G0578300 Rorug02G0578400 Rorug02G0578500
rosa_samantha	Rh2AG659500 Rh2BG670300 Rh2CG633600 Rh2DG684000
rosa_wichuraiana	Rw2G054010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	665
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	2 cut(s)	55, 664
AclWI	GGATC	6 cut(s)	61, 110, 346, 623, 636, 680
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	3 cut(s)	419, 672, 804
AfaI	GTAC	1 cut(s)	818
AfiI	CCNNNNNNNGG	3 cut(s)	125, 336, 735
AflIII	ACRYGT	2 cut(s)	613, 771
AgeI	ACCGGT	1 cut(s)	728
AgsI	TTSAA	4 cut(s)	205, 286, 296, 778
Alw21I	GWGCWC	2 cut(s)	456, 856
Alw26I	GTCTC	3 cut(s)	672, 683, 841
AlwI	GGATC	6 cut(s)	61, 110, 346, 623, 636, 680
AlwNI	CAGNNNCTG	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	669
AoxI	GGCC	3 cut(s)	134, 256, 721
ApaI	GGGCCC	1 cut(s)	725
ApeKI	GCWGC	4 cut(s)	83, 317, 389, 604
ApoI	RAATTY	1 cut(s)	415
AsiGI	ACCGGT	1 cut(s)	728
Asp700I	GAANNNNTTC	1 cut(s)	657
AspS9I	GGNCC	2 cut(s)	721, 722
AsuHPI	GGTGA	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	669
BaeGI	GKGCMC	1 cut(s)	725
BalI	TGGCCA	1 cut(s)	258
BamHI	GGATCC	1 cut(s)	628
BanII	GRGCYC	2 cut(s)	456, 725
BbsI	GAAGAC	2 cut(s)	219, 746
Bbv12I	GWGCWC	2 cut(s)	456, 856
BbvI	GCAGC	4 cut(s)	95, 329, 376, 591
BceAI	ACGGC	1 cut(s)	258
BcoDI	GTCTC	3 cut(s)	672, 683, 841
BfaI	CTAG	4 cut(s)	132, 705, 749, 798
BfmI	CTRYAG	3 cut(s)	315, 563, 633
BfuAI	ACCTGC	1 cut(s)	665
BisI	GCNGC	4 cut(s)	84, 318, 390, 605
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	4 cut(s)	85, 319, 391, 606
BmeT110I	CYCGRG	1 cut(s)	669
BmgT120I	GGNCC	2 cut(s)	721, 722
BmiI	GGNNCC	3 cut(s)	630, 723, 724
BmsI	GCATC	1 cut(s)	195
BpiI	GAAGAC	2 cut(s)	219, 746
BplI	GAGNNNNNCTC	2 cut(s)	663, 695
BpmI	CTGGAG	1 cut(s)	368
Bpu1102I	GCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	2 cut(s)	211, 823
BsaBI	GATNNNNATC	2 cut(s)	65, 690
BsaI	GGTCTC	2 cut(s)	672, 683
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	728
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 336, 735
Bse118I	RCCGGY	1 cut(s)	728
Bse1I	ACTGG	4 cut(s)	137, 304, 508, 544
Bse8I	GATNNNNATC	2 cut(s)	65, 690
BseDI	CCNNGG	1 cut(s)	180
BseJI	GATNNNNATC	2 cut(s)	65, 690
BseLI	CCNNNNNNNGG	3 cut(s)	125, 336, 735
BseMII	CTCAG	2 cut(s)	451, 479
BseNI	ACTGG	4 cut(s)	137, 304, 508, 544
BseRI	GAGGAG	2 cut(s)	210, 425
BseSI	GKGCMC	1 cut(s)	725
BseXI	GCAGC	4 cut(s)	95, 329, 376, 591
BseYI	CCCAGC	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	702
BshFI	GGCC	3 cut(s)	136, 258, 723
BshTI	ACCGGT	1 cut(s)	728
BsiEI	CGRYCG	1 cut(s)	702
BsiHKAI	GWGCWC	2 cut(s)	456, 856
BsiHKCI	CYCGRG	1 cut(s)	669
BsiSI	CCGG	1 cut(s)	729
BslI	CCNNNNNNNGG	3 cut(s)	125, 336, 735
BsmAI	GTCTC	3 cut(s)	672, 683, 841
BsnI	GGCC	3 cut(s)	136, 258, 723
Bso31I	GGTCTC	2 cut(s)	672, 683
BsoBI	CYCGRG	1 cut(s)	669
Bsp120I	GGGCCC	1 cut(s)	721
Bsp1286I	GDGCHC	3 cut(s)	456, 725, 856
Bsp143I	GATC	8 cut(s)	66, 115, 237, 351, 376, 628, 685, 699
Bsp1720I	GCTNAGC	1 cut(s)	393
BspACI	CCGC	2 cut(s)	55, 664
BspANI	GGCC	3 cut(s)	136, 258, 723
BspCNI	CTCAG	2 cut(s)	450, 480
BspLI	GGNNCC	3 cut(s)	630, 723, 724
BspMAI	CTGCAG	2 cut(s)	319, 637
BspMI	ACCTGC	1 cut(s)	665
BspPI	GGATC	6 cut(s)	61, 110, 346, 623, 636, 680
BspQI	GCTCTTC	1 cut(s)	594
BspTNI	GGTCTC	2 cut(s)	672, 683
BsrFI	RCCGGY	1 cut(s)	728
BsrI	ACTGG	4 cut(s)	137, 304, 508, 544
BssAI	RCCGGY	1 cut(s)	728
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	8 cut(s)	66, 115, 237, 351, 376, 628, 685, 699
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	4 cut(s)	24, 128, 426, 567
Bst6I	CTCTTC	1 cut(s)	594
BstC8I	GCNNGC	3 cut(s)	177, 260, 831
BstDEI	CTNAG	4 cut(s)	393, 437, 488, 682
BstKTI	GATC	8 cut(s)	69, 118, 240, 354, 379, 631, 688, 702
BstMAI	GTCTC	3 cut(s)	672, 683, 841
BstMBI	GATC	8 cut(s)	66, 115, 237, 351, 376, 628, 685, 699
BstMCI	CGRYCG	1 cut(s)	702
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 268
BstNSI	RCATGY	2 cut(s)	775, 833
BstSFI	CTRYAG	3 cut(s)	315, 563, 633
BstSLI	GKGCMC	1 cut(s)	725
BstV1I	GCAGC	4 cut(s)	95, 329, 376, 591
BstV2I	GAAGAC	2 cut(s)	219, 746
BstX2I	RGATCY	4 cut(s)	66, 351, 628, 685
BstYI	RGATCY	4 cut(s)	66, 351, 628, 685
BsuRI	GGCC	3 cut(s)	136, 258, 723
BtgZI	GCGATG	1 cut(s)	677
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	4 cut(s)	431, 445, 642, 780
BveI	ACCTGC	1 cut(s)	665
Cac8I	GCNNGC	3 cut(s)	177, 260, 831
CaiI	CAGNNNCTG	1 cut(s)	650
Cfr10I	RCCGGY	1 cut(s)	728
Cfr13I	GGNCC	2 cut(s)	721, 722
Csp6I	GTAC	1 cut(s)	817
CspAI	ACCGGT	1 cut(s)	728
CviAII	CATG	6 cut(s)	386, 712, 718, 772, 820, 830
CviQI	GTAC	1 cut(s)	817
DdeI	CTNAG	4 cut(s)	393, 437, 488, 682
DpnI	GATC	8 cut(s)	68, 117, 239, 353, 378, 630, 687, 701
DpnII	GATC	8 cut(s)	66, 115, 237, 351, 376, 628, 685, 699
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	2 cut(s)	456, 725
Eco31I	GGTCTC	2 cut(s)	672, 683
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	3 cut(s)	419, 672, 804
Eco88I	CYCGRG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	2 cut(s)	456, 725
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	6 cut(s)	389, 715, 721, 775, 823, 833
FalI	AAGNNNNNCTT	6 cut(s)	173, 205, 266, 298, 777, 809
FatI	CATG	6 cut(s)	385, 711, 717, 771, 819, 829
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	84, 318, 390, 605
FriOI	GRGCYC	2 cut(s)	456, 725
Fsp4HI	GCNGC	4 cut(s)	84, 318, 390, 605
FspBI	CTAG	4 cut(s)	132, 705, 749, 798
GluI	GCNGC	4 cut(s)	84, 318, 390, 605
GsaI	CCCAGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	3 cut(s)	136, 258, 723
HapII	CCGG	1 cut(s)	729
Hin1II	CATG	6 cut(s)	389, 715, 721, 775, 823, 833
HincII	GTYRAC	2 cut(s)	229, 334
HindII	GTYRAC	2 cut(s)	229, 334
HindIII	AAGCTT	2 cut(s)	290, 557
HinfI	GANTC	4 cut(s)	33, 151, 308, 409
HpaII	CCGG	1 cut(s)	729
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	4 cut(s)	229, 334, 365, 537
Hpy188I	TCNGA	4 cut(s)	307, 414, 520, 571
Hpy188III	TCNNGA	5 cut(s)	190, 286, 347, 669, 840
Hpy8I	GTNNAC	4 cut(s)	229, 334, 365, 537
HpyCH4III	ACNGT	4 cut(s)	24, 128, 426, 567
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	5 cut(s)	50, 317, 589, 607, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 268
HpyF3I	CTNAG	4 cut(s)	393, 437, 488, 682
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	6 cut(s)	389, 715, 721, 775, 823, 833
Kzo9I	GATC	8 cut(s)	66, 115, 237, 351, 376, 628, 685, 699
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	2 cut(s)	451, 859
Lsp1109I	GCAGC	4 cut(s)	95, 329, 376, 591
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	4 cut(s)	132, 705, 749, 798
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	8 cut(s)	68, 117, 239, 353, 378, 630, 687, 701
MboI	GATC	8 cut(s)	66, 115, 237, 351, 376, 628, 685, 699
MboII	GAAGA	7 cut(s)	76, 221, 224, 274, 611, 751, 797
MflI	RGATCY	4 cut(s)	66, 351, 628, 685
MhlI	GDGCHC	3 cut(s)	456, 725, 856
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	4 cut(s)	45, 415, 522, 801
MluNI	TGGCCA	1 cut(s)	258
MlyI	GAGTC	2 cut(s)	42, 418
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	6 cut(s)	73, 188, 446, 487, 589, 699
Mox20I	TGGCCA	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	2 cut(s)	612, 716
Msp20I	TGGCCA	1 cut(s)	258
MspA1I	CMGCKG	2 cut(s)	86, 664
MspI	CCGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	2 cut(s)	142, 268
NdeII	GATC	8 cut(s)	66, 115, 237, 351, 376, 628, 685, 699
NlaIII	CATG	6 cut(s)	389, 715, 721, 775, 823, 833
NlaIV	GGNNCC	3 cut(s)	630, 723, 724
NmeAIII	GCCGAG	1 cut(s)	87
NspI	RCATGY	2 cut(s)	775, 833
PaeI	GCATGC	1 cut(s)	833
PaeR7I	CTCGAG	1 cut(s)	669
PciI	ACATGT	1 cut(s)	771
PciSI	GCTCTTC	1 cut(s)	594
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	151, 308
PinAI	ACCGGT	1 cut(s)	728
PkrI	GCNGC	4 cut(s)	85, 319, 391, 606
Ple19I	CGATCG	1 cut(s)	702
PleI	GAGTC	2 cut(s)	41, 417
PpsI	GAGTC	2 cut(s)	41, 417
PscI	ACATGT	1 cut(s)	771
Psp124BI	GAGCTC	1 cut(s)	456
PspFI	CCCAGC	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	630, 723, 724
PspOMI	GGGCCC	1 cut(s)	721
PspPI	GGNCC	2 cut(s)	721, 722
PstI	CTGCAG	2 cut(s)	319, 637
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	4 cut(s)	66, 351, 628, 685
PvuI	CGATCG	1 cut(s)	702
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	1 cut(s)	818
RsaNI	GTAC	1 cut(s)	817
RseI	CAYNNNNRTG	2 cut(s)	612, 716
SacI	GAGCTC	1 cut(s)	456
SalI	GTCGAC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	4 cut(s)	84, 318, 390, 605
Sau3AI	GATC	8 cut(s)	66, 115, 237, 351, 376, 628, 685, 699
Sau96I	GGNCC	2 cut(s)	721, 722
SchI	GAGTC	2 cut(s)	42, 418
SduI	GDGCHC	3 cut(s)	456, 725, 856
SfaNI	GCATC	1 cut(s)	195
SfcI	CTRYAG	3 cut(s)	315, 563, 633
Sfr274I	CTCGAG	1 cut(s)	669
SgrAI	CRCCGGYG	1 cut(s)	728
SlaI	CTCGAG	1 cut(s)	669
SmiMI	CAYNNNNRTG	2 cut(s)	612, 716
SmlI	CTYRAG	3 cut(s)	190, 669, 838
SmoI	CTYRAG	3 cut(s)	190, 669, 838
SphI	GCATGC	1 cut(s)	833
Sse9I	AATT	4 cut(s)	45, 415, 522, 801
SsiI	CCGC	2 cut(s)	55, 664
SspMI	CTAG	4 cut(s)	132, 705, 749, 798
SstI	GAGCTC	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	4 cut(s)	24, 128, 426, 567
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	3 cut(s)	228, 456, 670
TasI	AATT	4 cut(s)	45, 415, 522, 801
TatI	WGTACW	1 cut(s)	816
TfiI	GAWTC	2 cut(s)	151, 308
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	4 cut(s)	431, 445, 642, 787
TseI	GCWGC	4 cut(s)	83, 317, 389, 604
TspDTI	ATGAA	3 cut(s)	77, 700, 706
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	4 cut(s)	431, 445, 642, 787
XapI	RAATTY	1 cut(s)	415
XceI	RCATGY	2 cut(s)	775, 833
XhoI	CTCGAG	1 cut(s)	669
XmiI	GTMKAC	1 cut(s)	228
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	4 cut(s)	132, 705, 749, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.