Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002568

Physical Location & Seq

Genomic Coordinates Reverse (-)

70182205 .. 70182576

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0578200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAAGATCGATCTCGCACCGTGAACACGGTTCTATGGAACACGATTCAGGTTCTATTTCCGCAAGAAGTTGAAGCAAGGAAAGCGGCTGGAGCCTTGAGTAGTCGTGAAGAAGGTGAGCGGGAAATCCCCGATAAGGCCTTTAGTAGTAGCAACTCGAGGAATCAAAGCAGAAGAGTATCTGGCAGTGATGTGGCTGTAAGGAGAAGAGGGGTAGTATTAAGCCAAGATGATGATGAGGACGATCCTGCACCACTAGCTATAAGGTTACAGATGAGAGAAGCTGAGAATCAAAATCGAGAACTAGGCAGCTTGGCTCGACCTGTAAGGATATCATCAGGCAGAGAAATTAGGCATATAACGAGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

123

Amino Acids

13.88

Weight (kDa)

8.35

Isoelectric Point (pI)

70.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01770 AT3G01770 AT3G27260 AT3G27260 AT3G27260 AT3G27260 AT5G14270 AT5G14270 AT5G14270
fragaria_vesca	FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920
malus_domestica	MD09G1016100.v1.1 MD17G1016600.v1.1
prunus_persica	Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1
pyrus_communis	pycom111g01310 pycom17g01330
rosa_chinensis	RchiOBHm_Chr2g0174631
rosa_laevigata	RLG00000022278
rosa_multiflora	Rmu_sc0003649.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077990
rosa_rugosa	Rorug02G0578200 Rorug02G0578300 Rorug02G0578400 Rorug02G0578500
rosa_samantha	Rh2AG659500 Rh2BG670300 Rh2CG633600 Rh2DG684000
rosa_wichuraiana	Rw2G054010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	121
AciI	CCGC	3 cut(s)	62, 86, 121
AclWI	GGATC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	74
AluBI	AGCT	3 cut(s)	260, 284, 312
AluI	AGCT	3 cut(s)	260, 284, 312
AlwI	GGATC	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	157
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	321
BfaI	CTAG	2 cut(s)	257, 305
BisI	GCNGC	2 cut(s)	87, 310
BlsI	GCNGC	2 cut(s)	88, 311
BmeT110I	CYCGRG	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	118
Bsa29I	ATCGAT	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseCI	ATCGAT	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	136
BsnI	GGCC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	7, 11, 244
BspACI	CCGC	3 cut(s)	62, 86, 121
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	277
BspDI	ATCGAT	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	121
BssMI	GATC	3 cut(s)	7, 11, 244
Bst4CI	ACNGT	2 cut(s)	22, 31
Bst6I	CTCTTC	2 cut(s)	169, 202
BstDEI	CTNAG	1 cut(s)	285
BstKTI	GATC	3 cut(s)	10, 14, 247
BstMBI	GATC	3 cut(s)	7, 11, 244
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 92, 257
BstV1I	GCAGC	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	10
CviJI	RGCY	9 cut(s)	89, 95, 140, 197, 225, 260, 284, 312, 317
CviKI_1	RGCY	9 cut(s)	89, 95, 140, 197, 225, 260, 284, 312, 317
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	9, 13, 246
DpnII	GATC	3 cut(s)	7, 11, 244
Eam1104I	CTCTTC	2 cut(s)	169, 202
EarI	CTCTTC	2 cut(s)	169, 202
Eco147I	AGGCCT	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	333
FaiI	YATR	4 cut(s)	37, 263, 357, 359
FauI	CCCGC	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	87, 310
Fsp4HI	GCNGC	2 cut(s)	87, 310
FspBI	CTAG	2 cut(s)	257, 305
GluI	GCNGC	2 cut(s)	87, 310
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	140
HinfI	GANTC	3 cut(s)	46, 163, 289
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	107, 299
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	2 cut(s)	22, 31
HpyCH4V	TGCA	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 92, 257
HpyF3I	CTNAG	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	7, 11, 244
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	6 cut(s)	35, 75, 168, 261, 324, 336
Lsp1109I	GCAGC	1 cut(s)	321
MaeI	CTAG	2 cut(s)	257, 305
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	3 cut(s)	9, 13, 246
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	3 cut(s)	7, 11, 244
MboII	GAAGA	4 cut(s)	17, 122, 186, 219
MluCI	AATT	1 cut(s)	348
MnlI	CCTC	4 cut(s)	153, 203, 232, 357
MseI	TTAA	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	83, 92, 257
NdeII	GATC	3 cut(s)	7, 11, 244
NlaIV	GGNNCC	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	140
PfeI	GAWTC	3 cut(s)	46, 163, 289
PkrI	GCNGC	2 cut(s)	88, 311
PspN4I	GGNNCC	1 cut(s)	94
PspXI	VCTCGAGB	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	2 cut(s)	87, 310
Sau3AI	GATC	3 cut(s)	7, 11, 244
SetI	ASST	7 cut(s)	54, 118, 262, 269, 286, 314, 325
Sfr274I	CTCGAG	1 cut(s)	157
SlaI	CTCGAG	1 cut(s)	157
SmlI	CTYRAG	2 cut(s)	97, 157
SmoI	CTYRAG	2 cut(s)	97, 157
Sse9I	AATT	1 cut(s)	348
SseBI	AGGCCT	1 cut(s)	140
SsiI	CCGC	3 cut(s)	62, 86, 121
SspMI	CTAG	2 cut(s)	257, 305
StuI	AGGCCT	1 cut(s)	140
TaaI	ACNGT	2 cut(s)	22, 31
TaqI	TCGA	4 cut(s)	10, 158, 298, 319
TasI	AATT	1 cut(s)	348
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	3 cut(s)	46, 163, 289
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	1 cut(s)	309
TspRI	CASTG	1 cut(s)	193
XhoI	CTCGAG	1 cut(s)	157
XspI	CTAG	2 cut(s)	257, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.