Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002568

Physical Location & Seq

Genomic Coordinates Forward (+)

70196104 .. 70197994

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0578500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCGTCGGGCCTTTGCCGCCAGCTCTTTCGATCAGTCTCTCCACTCTCCTCTGTGCAGAAGCAAATGGATGAAGGTGGCGAAGTGGAGTCAAAAGTAGGGGAGGTAATGGAAGGAGTGGCTTCAATGGCATTGTTACCATGTGGGTCTATATCAGGCCATTTCATCAAAGTGAATGATTCCACTAACATTTGCTATGGTCTTCATGGAACTGAGTTGGCTTGTGAAAAGGAGTGTAGCAGGGGAGAAGATTATCGTCTGATCAAGCTTGCAATCATAGATTACAATAAAAAGAAGGAGAAAGTTGTTGTTGTGGAGTGTAGAGGACATGATGCTGCTAGGTTGAATAGCGTCGATCATGCTCATGGTTGGGAGAAGGATGTCGTAGATATGGTTGATGAACAGCATGGGAAGGACAAGATTGTGGTTTCGTTCAACTGTGAGACACTGAAATCTGACAAAGCAGCAGAAGATCATATCAGCAAGTTTTTGCCCAAACTAGCTGGCCTAGATGCTGTTGTTATTATGGTTTGCATAATCATCTTTTGGACAAGCCAGAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

188

Amino Acids

20.75

Weight (kDa)

5.8

Isoelectric Point (pI)

28.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01770 AT3G01770 AT3G27260 AT3G27260 AT3G27260 AT3G27260 AT5G14270 AT5G14270 AT5G14270
fragaria_vesca	FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920 FvH4_6g52920
malus_domestica	MD09G1016100.v1.1 MD17G1016600.v1.1
prunus_persica	Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1 Prupe.3G301300_v2.0.a1
pyrus_communis	pycom111g01310 pycom17g01330
rosa_chinensis	RchiOBHm_Chr2g0174631
rosa_laevigata	RLG00000022278
rosa_multiflora	Rmu_sc0003649.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077990
rosa_rugosa	Rorug02G0578200 Rorug02G0578300 Rorug02G0578400 Rorug02G0578500
rosa_samantha	Rh2AG659500 Rh2BG670300 Rh2CG633600 Rh2DG684000
rosa_wichuraiana	Rw2G054010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	561
AgsI	TTSAA	3 cut(s)	126, 346, 436
AluBI	AGCT	3 cut(s)	25, 268, 503
AluI	AGCT	3 cut(s)	25, 268, 503
Alw26I	GTCTC	2 cut(s)	43, 437
AoxI	GGCC	3 cut(s)	10, 157, 505
ApeKI	GCWGC	2 cut(s)	335, 464
ApoI	RAATTY	1 cut(s)	561
AspS9I	GGNCC	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	322, 476
BclI	TGATCA	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	43, 437
BfaI	CTAG	3 cut(s)	339, 500, 509
BisI	GCNGC	3 cut(s)	19, 336, 465
BlsI	GCNGC	3 cut(s)	20, 337, 466
BmgT120I	GGNCC	1 cut(s)	10
BmsI	GCATC	2 cut(s)	322, 502
BpiI	GAAGAC	1 cut(s)	194
BseGI	GGATG	2 cut(s)	76, 385
BseMII	CTCAG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	322, 476
BsgI	GTGCAG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	12, 159, 507
BsmAI	GTCTC	2 cut(s)	43, 437
BsnI	GGCC	3 cut(s)	12, 159, 507
Bsp143I	GATC	4 cut(s)	32, 261, 355, 472
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	3 cut(s)	12, 159, 507
BspCNI	CTCAG	1 cut(s)	205
BssMI	GATC	4 cut(s)	32, 261, 355, 472
Bst4CI	ACNGT	1 cut(s)	440
BstC8I	GCNNGC	3 cut(s)	23, 270, 505
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	76, 385
BstKTI	GATC	4 cut(s)	35, 264, 358, 475
BstMAI	GTCTC	2 cut(s)	43, 437
BstMBI	GATC	4 cut(s)	32, 261, 355, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 128
BstV1I	GCAGC	2 cut(s)	322, 476
BstV2I	GAAGAC	1 cut(s)	194
BsuRI	GGCC	3 cut(s)	12, 159, 507
BtsCI	GGATG	2 cut(s)	76, 385
BtsIMutI	CAGTG	1 cut(s)	446
Cac8I	GCNNGC	3 cut(s)	23, 270, 505
Cfr13I	GGNCC	1 cut(s)	10
CseI	GACGC	1 cut(s)	340
CviAII	CATG	6 cut(s)	141, 206, 329, 359, 365, 407
CviJI	RGCY	9 cut(s)	12, 25, 122, 159, 221, 268, 503, 507, 555
CviKI_1	RGCY	9 cut(s)	12, 25, 122, 159, 221, 268, 503, 507, 555
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	4 cut(s)	34, 263, 357, 474
DpnII	GATC	4 cut(s)	32, 261, 355, 472
FaeI	CATG	6 cut(s)	144, 209, 332, 362, 368, 410
FatI	CATG	6 cut(s)	140, 205, 328, 358, 364, 406
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	19, 336, 465
FokI	GGATG	2 cut(s)	83, 392
Fsp4HI	GCNGC	3 cut(s)	19, 336, 465
FspBI	CTAG	3 cut(s)	339, 500, 509
GluI	GCNGC	3 cut(s)	19, 336, 465
HaeIII	GGCC	3 cut(s)	12, 159, 507
HgaI	GACGC	1 cut(s)	340
Hin1II	CATG	6 cut(s)	144, 209, 332, 362, 368, 410
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	89, 179
Hpy188I	TCNGA	2 cut(s)	261, 457
Hpy99I	CGWCG	2 cut(s)	10, 356
HpyAV	CCTTC	5 cut(s)	68, 107, 289, 370, 406
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4V	TGCA	3 cut(s)	58, 272, 534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 128
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	6 cut(s)	144, 209, 332, 362, 368, 410
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	4 cut(s)	32, 261, 355, 472
LpnPI	CCDG	4 cut(s)	35, 141, 226, 489
Lsp1109I	GCAGC	2 cut(s)	322, 476
LweI	GCATC	2 cut(s)	322, 502
MaeI	CTAG	3 cut(s)	339, 500, 509
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	4 cut(s)	34, 263, 357, 474
MboI	GATC	4 cut(s)	32, 261, 355, 472
MboII	GAAGA	3 cut(s)	194, 260, 482
MluCI	AATT	1 cut(s)	561
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	3 cut(s)	61, 97, 317
MseI	TTAA	1 cut(s)	565
MslI	CAYNNNNRTG	2 cut(s)	170, 363
MwoI	GCNNNNNNNGC	2 cut(s)	18, 128
NdeII	GATC	4 cut(s)	32, 261, 355, 472
NlaIII	CATG	6 cut(s)	144, 209, 332, 362, 368, 410
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	20, 337, 466
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	10
RseI	CAYNNNNRTG	2 cut(s)	170, 363
SaqAI	TTAA	1 cut(s)	565
SatI	GCNGC	3 cut(s)	19, 336, 465
Sau3AI	GATC	4 cut(s)	32, 261, 355, 472
Sau96I	GGNCC	1 cut(s)	10
SchI	GAGTC	1 cut(s)	98
SetI	ASST	6 cut(s)	27, 79, 108, 270, 344, 505
SfaNI	GCATC	2 cut(s)	322, 502
SmiMI	CAYNNNNRTG	2 cut(s)	170, 363
Sse9I	AATT	1 cut(s)	561
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	3 cut(s)	339, 500, 509
TaaI	ACNGT	1 cut(s)	440
TaqI	TCGA	2 cut(s)	31, 354
TasI	AATT	1 cut(s)	561
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	565
Tru9I	TTAA	1 cut(s)	565
TscAI	CASTG	1 cut(s)	453
TseI	GCWGC	2 cut(s)	335, 464
TspDTI	ATGAA	4 cut(s)	87, 154, 194, 414
TspRI	CASTG	1 cut(s)	453
XapI	RAATTY	1 cut(s)	561
XspI	CTAG	3 cut(s)	339, 500, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.