Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009079

Physical Location & Seq

Genomic Coordinates Reverse (-)

602401 .. 605506

Gene Structure 3106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCTGCTTCTTCTTTATTTAATCTCCCATTGATTCGCCTCAGATCTCTCGCTCTTTCGTCTTCTTTTTCTTCTTTCCGATTTGCCCATCGTCCTCTGTCATCGATTTCACCGAGAAAGTTACCGAATTTTCGTGCTTTCTCTGGTACCGCTATGACAGATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATGTTTGAGGATGAATGCATTCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGCAAGTATAATTGTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTAGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAGCAAAGGTCAAACACAAAGGTTACGTTCCCTCTAGTGTGGACTAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATCCAGGACAATGCACTAGGTGTGAGGAATGCTGCACAAAGAAAGCTTCTCGATGAGCTTGGTATTGTAGCTGAAGATGTACCAGTCGATGAGTTCACTCCCTTGGGACGTATGCTGTACAAGGCTCCTTCTGATGGCAAATGGGGAGAGCATGAACTTGATTACTTGCTCTTCATCGTGCGAGACGTGAAGGTTCAACCAAACCCAGATGAAGTAGCTGAGATCAAGTATGTGAGCCGGGAAGAGCTGAAGGAGCTGGTGAAGAAAGCAGATGCAGGTGAGGAAGGTTTGAAACTGTCACCATGGTTCAGATTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAACTTTGGTTGAAGCTATAGACATGAAAACCATCCACAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004452 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009507 GO:0009536 GO:0009791 GO:0009908 GO:0009987 GO:0016853 GO:0016860 GO:0016863 GO:0019637 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046490 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090407 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

NUDIX

Protein Analysis

284

Amino Acids

32.61

Weight (kDa)

6.1

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	103 - 241	6.3e-16	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02780 AT3G02780 AT5G16440
fragaria_vesca	FvH4_6g00470
malus_domestica	MD04G1245100.v1.1 MD12G1086800.v1.1
prunus_persica	Prupe.6G361700_v2.0.a1 Prupe.6G361700_v2.0.a1 Prupe.6G361700_v2.0.a1
pyrus_communis	pycom04g21580 pycom12g23880
rosa_chinensis	RchiOBHm_Chr3g0447851
rosa_laevigata	RLG00000025966
rosa_multiflora	Rmu_co8057268.1_g000001 Rmu_ssc0000391.1_g000034
rosa_roxburghii	Rroxscaffold_6G00426050
rosa_rugosa	Rorug02G0606500
rosa_samantha	Rh3AG005700 Rh3BG005400 Rh3CG005600 Rh3DG005900
rosa_wichuraiana	Rw3G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	713
AatII	GACGTC	1 cut(s)	199
Acc36I	ACCTGC	1 cut(s)	713
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	801
AcsI	RAATTY	2 cut(s)	127, 301
AcuI	CTGAAG	2 cut(s)	540, 716
AcyI	GRCGYC	1 cut(s)	196
AdeI	CACNNNGTG	1 cut(s)	467
AfaI	GTAC	3 cut(s)	148, 528, 566
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	5 cut(s)	293, 337, 644, 739, 821
AjiI	CACGTC	1 cut(s)	634
AjnI	CCWGG	1 cut(s)	450
AjuI	GAANNNNNNNTTGG	2 cut(s)	797, 829
AluBI	AGCT	8 cut(s)	445, 493, 505, 518, 665, 694, 703, 824
AluI	AGCT	8 cut(s)	445, 493, 505, 518, 665, 694, 703, 824
Alw26I	GTCTC	3 cut(s)	187, 203, 624
AlwI	GGATC	1 cut(s)	801
ApeKI	GCWGC	3 cut(s)	307, 417, 479
ApoI	RAATTY	2 cut(s)	127, 301
Asp700I	GAANNNNTTC	1 cut(s)	219
Asp718I	GGTACC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	4 cut(s)	102, 718, 737, 738
BanI	GGYRCC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	3 cut(s)	294, 429, 466
BccI	CCATC	5 cut(s)	96, 274, 429, 575, 848
BciT130I	CCWGG	1 cut(s)	452
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	3 cut(s)	187, 203, 624
BfaI	CTAG	2 cut(s)	395, 464
BfmI	CTRYAG	1 cut(s)	825
BfuAI	ACCTGC	1 cut(s)	713
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	3 cut(s)	308, 418, 480
BlsI	GCNGC	3 cut(s)	309, 419, 481
Bme1390I	CCNGG	2 cut(s)	452, 686
BmgBI	CACGTC	1 cut(s)	634
BmiI	GGNNCC	2 cut(s)	148, 573
BmrFI	CCNGG	2 cut(s)	452, 686
BmsI	GCATC	3 cut(s)	160, 172, 709
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	686
Bsa29I	ATCGAT	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	549, 749
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	452
BseCI	ATCGAT	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	549, 749
BseGI	GGATG	4 cut(s)	187, 217, 421, 840
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMII	CTCAG	2 cut(s)	55, 657
BseNI	ACTGG	1 cut(s)	530
BseXI	GCAGC	3 cut(s)	294, 429, 466
BsgI	GTGCAG	2 cut(s)	293, 465
BshNI	GGYRCC	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	685
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmAI	GTCTC	3 cut(s)	187, 203, 624
BsmBI	CGTCTC	3 cut(s)	187, 203, 624
BsmFI	GGGAC	1 cut(s)	567
BsmI	GAATGC	3 cut(s)	219, 221, 481
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	4 cut(s)	44, 238, 669, 793
Bsp19I	CCATGG	1 cut(s)	749
BspACI	CCGC	1 cut(s)	150
BspCNI	CTCAG	2 cut(s)	54, 658
BspDI	ATCGAT	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	148, 573
BspMI	ACCTGC	1 cut(s)	713
BspPI	GGATC	1 cut(s)	801
BspQI	GCTCTTC	2 cut(s)	623, 684
BspT107I	GGYRCC	1 cut(s)	146
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	1 cut(s)	530
BssECI	CCNNGG	2 cut(s)	549, 749
BssMI	GATC	4 cut(s)	44, 238, 669, 793
BssNI	GRCGYC	1 cut(s)	196
BssT1I	CCWWGG	2 cut(s)	549, 749
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	2 cut(s)	434, 744
Bst6I	CTCTTC	2 cut(s)	623, 684
BstACI	GRCGYC	1 cut(s)	196
BstAUI	TGTACA	1 cut(s)	564
BstDEI	CTNAG	2 cut(s)	41, 666
BstDSI	CCRYGG	1 cut(s)	749
BstF5I	GGATG	4 cut(s)	187, 217, 421, 840
BstKTI	GATC	4 cut(s)	47, 241, 672, 796
BstMAI	GTCTC	3 cut(s)	187, 203, 624
BstMBI	GATC	4 cut(s)	44, 238, 669, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 700
BstNI	CCWGG	1 cut(s)	452
BstSCI	CCNGG	2 cut(s)	450, 684
BstSFI	CTRYAG	1 cut(s)	825
BstV1I	GCAGC	3 cut(s)	294, 429, 466
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
Bsu15I	ATCGAT	1 cut(s)	104
BsuTUI	ATCGAT	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	749
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	4 cut(s)	187, 217, 421, 840
BveI	ACCTGC	1 cut(s)	713
ClaI	ATCGAT	1 cut(s)	104
Csp6I	GTAC	3 cut(s)	147, 527, 565
CviAII	CATG	6 cut(s)	202, 254, 599, 750, 797, 832
CviQI	GTAC	3 cut(s)	147, 527, 565
DdeI	CTNAG	2 cut(s)	41, 666
DpnI	GATC	4 cut(s)	46, 240, 671, 795
DpnII	GATC	4 cut(s)	44, 238, 669, 793
DraIII	CACNNNGTG	1 cut(s)	467
Eam1104I	CTCTTC	2 cut(s)	623, 684
EarI	CTCTTC	2 cut(s)	623, 684
Eco130I	CCWWGG	2 cut(s)	549, 749
Eco57I	CTGAAG	2 cut(s)	540, 716
EcoRII	CCWGG	1 cut(s)	450
EcoT14I	CCWWGG	2 cut(s)	549, 749
EcoT22I	ATGCAT	1 cut(s)	221
ErhI	CCWWGG	2 cut(s)	549, 749
Esp3I	CGTCTC	3 cut(s)	187, 203, 624
FaeI	CATG	6 cut(s)	205, 257, 602, 753, 800, 835
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	6 cut(s)	201, 253, 598, 749, 796, 831
Fnu4HI	GCNGC	3 cut(s)	308, 418, 480
FokI	GGATG	4 cut(s)	194, 224, 408, 827
Fsp4HI	GCNGC	3 cut(s)	308, 418, 480
FspBI	CTAG	2 cut(s)	395, 464
GluI	GCNGC	3 cut(s)	308, 418, 480
GsuI	CTGGAG	1 cut(s)	344
HapII	CCGG	1 cut(s)	685
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	6 cut(s)	205, 257, 602, 753, 800, 835
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	2 cut(s)	34, 437
HpaII	CCGG	1 cut(s)	685
HphI	GGTGA	4 cut(s)	102, 718, 737, 738
Hpy166II	GTNNAC	3 cut(s)	402, 543, 769
Hpy188I	TCNGA	8 cut(s)	44, 80, 192, 279, 442, 580, 758, 854
Hpy188III	TCNNGA	2 cut(s)	497, 778
Hpy8I	GTNNAC	3 cut(s)	402, 543, 769
HpyAV	CCTTC	4 cut(s)	585, 631, 691, 725
HpyCH4III	ACNGT	2 cut(s)	434, 744
HpyCH4IV	ACGT	4 cut(s)	196, 386, 556, 633
HpyCH4V	TGCA	6 cut(s)	219, 310, 417, 461, 482, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 700
HpyF3I	CTNAG	2 cut(s)	41, 666
HpySE526I	ACGT	4 cut(s)	196, 386, 556, 633
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	6 cut(s)	205, 257, 602, 753, 800, 835
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	4 cut(s)	44, 238, 669, 793
LguI	GCTCTTC	2 cut(s)	623, 684
LmnI	GCTCC	2 cut(s)	577, 700
Lsp1109I	GCAGC	3 cut(s)	294, 429, 466
LweI	GCATC	3 cut(s)	160, 172, 709
MaeI	CTAG	2 cut(s)	395, 464
MaeII	ACGT	4 cut(s)	196, 386, 556, 633
MaeIII	GTNAC	3 cut(s)	120, 382, 744
MalI	GATC	4 cut(s)	46, 240, 671, 795
MboI	GATC	4 cut(s)	44, 238, 669, 793
MboII	GAAGA	7 cut(s)	3, 54, 63, 533, 610, 701, 721
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	4 cut(s)	127, 268, 301, 772
MnlI	CCTC	7 cut(s)	50, 105, 202, 402, 435, 465, 721
Mph1103I	ATGCAT	1 cut(s)	221
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	1 cut(s)	21
MspI	CCGG	1 cut(s)	685
MspR9I	CCNGG	2 cut(s)	452, 686
Mva1269I	GAATGC	3 cut(s)	219, 221, 481
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	361, 700
NciI	CCSGG	1 cut(s)	686
NcoI	CCATGG	1 cut(s)	749
NdeII	GATC	4 cut(s)	44, 238, 669, 793
NlaIII	CATG	6 cut(s)	205, 257, 602, 753, 800, 835
NlaIV	GGNNCC	2 cut(s)	148, 573
NmuCI	GTSAC	1 cut(s)	744
NsiI	ATGCAT	1 cut(s)	221
PaqCI	CACCTGC	1 cut(s)	713
PciSI	GCTCTTC	2 cut(s)	623, 684
PcsI	WCGNNNNNNNCGW	2 cut(s)	110, 630
PctI	GAATGC	3 cut(s)	219, 221, 481
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	34, 437
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	3 cut(s)	309, 419, 481
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	148, 573
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	3 cut(s)	148, 528, 566
RsaNI	GTAC	3 cut(s)	147, 527, 565
SapI	GCTCTTC	2 cut(s)	623, 684
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	3 cut(s)	308, 418, 480
Sau3AI	GATC	4 cut(s)	44, 238, 669, 793
ScrFI	CCNGG	2 cut(s)	452, 686
SfaNI	GCATC	3 cut(s)	160, 172, 709
SfcI	CTRYAG	1 cut(s)	825
Sse9I	AATT	4 cut(s)	127, 268, 301, 772
SsiI	CCGC	1 cut(s)	150
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	2 cut(s)	395, 464
StyD4I	CCNGG	2 cut(s)	450, 684
StyI	CCWWGG	2 cut(s)	549, 749
TaaI	ACNGT	2 cut(s)	434, 744
TaiI	ACGT	4 cut(s)	199, 389, 559, 636
TaqI	TCGA	4 cut(s)	104, 341, 498, 534
TasI	AATT	4 cut(s)	127, 268, 301, 772
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	2 cut(s)	34, 437
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	744
TseI	GCWGC	3 cut(s)	307, 417, 479
Tsp45I	GTSAC	1 cut(s)	744
TspDTI	ATGAA	7 cut(s)	228, 246, 610, 615, 672, 797, 848
XapI	RAATTY	2 cut(s)	127, 301
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	2 cut(s)	395, 464
ZraI	GACGTC	1 cut(s)	197
Zsp2I	ATGCAT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.