RLG00000025966

Isopentenyl-diphosphate Delta-isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009079
Physical Location & Seq
Reverse (-)
49519566 .. 49525187
5622 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025966

Sequence Viewer

Length: 1446 bp
ATGAGAAGTGGTCTTCTTAACACAGCTACCAGAGCCACACTCTCTTCCTTCTTCCCCAAATCTCATCTTCATCTTCATCTTCATCGTCTCTCCTCTTCTTCTTCTTCTTCTTCAAAACCTTTCCCTTCTCTCCTTCCGCCGAGGTCATCTCCGTCTTTACGCATCTCCACCATGGCCAACGCCCCCGATGCCGGCATGGACGCCGTCCAGCGACGCCTTATGTTCGACGACGAATGTATTCTAGTGGATGAGAATGATCGTGTTGTTGGTCATGACACCAAGTATAATTGTCACTTGATGGAAAAGATTGAATCTGAAAATCTGCTTCACAGAGCTTTCAGTGTGTTTTTGTTCAACTCAAAGAACGAGTTGCTTCTTCAGCAACGTTCTGCAACAAAGGTAACATTCCCACTTGTGTGGACAAACACCTGTTGTAGCCATCCACTATACCGTGAATCTGAGCTTATCGATGAGGAGTGTCTTGGAGTAAGAAATGCTGCCCAAAGGAAGCTTTTGGATGAACTGGGTATCCCTGCTGAAGATGTGCCTGTTGATCAGTTTATTCCTTTGGGTCGCATGTTGTACAAGGCACCTTCCGATGGCAAGTGGGGAGAACATGAACTTGATTACCTGCTCTTCACTGTGCGAGATGTGAGCGTGCATCCAAACCCTGATGAAGTTGCGGATATCAAATACGTAAACCAAGAGGAGTTGAAGGAGCTGTTGAGGAAGGCGGATGCCGGGGAGGAAGGTCTGAAGCTGTCCCCTTGGTTCAGACTAGTTGTGGACAATTTCCTCTTCAAGTGGTGGGATCATGTTGAGAAACGCACCATCAAGGAAGCTGCTGACATGAAAACCATCCACAGACCTCTCTCTCTCTCTGTTTATCTGTCTCTCCGTTCCTGTGTCCTGCCGCTCCATTCCATTCAAGGTGCTTGGGGACAAATGGCCTTGGTTACAACTGCTGAAGTCTGCGATGCACATTCGTCGCTCATTGTAAGTGGTGAGCTTCGGGTGCTTGAGCCAATCTTTCAGATATATGGGCGTCGACAGGTCTTCTCTGGACAAGTAGTTACCTTAAAGGTATTCGAAGACAATGTTCTGGTTCGTGCCTTTCTTGAGGAGAAAGGCAATGGCAGAGTTCTTGTTGTGGACGGGGGTGGAAGCAAGCGGTGTGCAATATTGGGTGGCAACCCTGTAGTCCAAGCCCAGAATAATGGCTGGGCTGGTATAGTGGTCAATGGCTGCATAAGAGATGCTGATGAGATTAATGGCTGTGACATTGGGGTGAGAGCTCTGGCTTCCCATCCAATGAAGGCCAATAAGAAGGGAACCGGAGAGAAGCAAGTACCGATAACCATTGCTGGCACAAGGATCAACGATGGGGAATGGCTTTATGCAGACACCGATGGAATTCTGATTTCTCATACTGAGCTATCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
NUDIX

Protein Analysis

482

Amino Acids

53.59

Weight (kDa)

6.08

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 109 - 244 1.6e-13 NUDIX domain
RraA-like PF03737 321 - 474 6.3e-44 Aldolase/RraA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 639
AccB1I GGYRCC 1 cut(s) 589
AccBSI CCGCTC 1 cut(s) 916
AccI GTMKAC 1 cut(s) 1048
AciI CCGC 5 cut(s) 137, 683, 734, 914, 1171
AclI AACGTT 1 cut(s) 385
AclWI GGATC 2 cut(s) 819, 1382
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 1413
AcuI CTGAAG 4 cut(s) 362, 558, 776, 987
AcyI GRCGYC 3 cut(s) 201, 214, 1045
AfaI GTAC 2 cut(s) 584, 1350
AfiI CCNNNNNNNGG 2 cut(s) 191, 599
AgsI TTSAA 6 cut(s) 114, 311, 355, 715, 802, 929
AhlI ACTAGT 1 cut(s) 778
AleI CACNNNNGTG 1 cut(s) 415
AloI GAACNNNNNNTCC 2 cut(s) 513, 545
Alw21I GWGCWC 1 cut(s) 1297
Alw26I GTCTC 2 cut(s) 92, 897
AlwI GGATC 2 cut(s) 819, 1382
AoxI GGCC 3 cut(s) 174, 948, 1317
ApeKI GCWGC 3 cut(s) 497, 842, 1245
ApoI RAATTY 1 cut(s) 1413
AseI ATTAAT 1 cut(s) 1269
Asp700I GAANNNNTTC 1 cut(s) 237
AsuC2I CCSGG 1 cut(s) 742
AsuHPI GGTGA 2 cut(s) 1016, 1300
AsuII TTCGAA 1 cut(s) 1089
BalI TGGCCA 1 cut(s) 176
BanI GGYRCC 1 cut(s) 589
BanII GRGCYC 1 cut(s) 1297
BbsI GAAGAC 3 cut(s) 5, 1048, 1098
Bbv12I GWGCWC 1 cut(s) 1297
BbvI GCAGC 3 cut(s) 484, 829, 1232
BccI CCATC 8 cut(s) 292, 447, 593, 839, 866, 1314, 1376, 1403
BceAI ACGGC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 969, 1003
BciVI GTATCC 1 cut(s) 539
BclI TGATCA 1 cut(s) 553
BcnI CCSGG 1 cut(s) 742
BcoDI GTCTC 2 cut(s) 92, 897
BcuI ACTAGT 1 cut(s) 778
BfaI CTAG 2 cut(s) 242, 779
BfmI CTRYAG 1 cut(s) 1197
BfuAI ACCTGC 1 cut(s) 639
BfuI GTATCC 1 cut(s) 539
BisI GCNGC 4 cut(s) 498, 843, 914, 1246
BlsI GCNGC 4 cut(s) 499, 844, 915, 1247
Bme1390I CCNGG 1 cut(s) 742
BmiI GGNNCC 2 cut(s) 591, 1333
BmrFI CCNGG 1 cut(s) 742
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 6 cut(s) 171, 178, 670, 727, 967, 1246
BmuI ACTGGG 1 cut(s) 533
BpiI GAAGAC 3 cut(s) 5, 1048, 1098
BplI GAGNNNNNCTC 4 cut(s) 24, 56, 133, 165
Bpu14I TTCGAA 1 cut(s) 1089
BpuEI CTTGAG 2 cut(s) 1040, 1139
BpuMI CCSGG 1 cut(s) 742
Bsa29I ATCGAT 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 697
BsaHI GRCGYC 3 cut(s) 201, 214, 1045
BsaJI CCNNGG 5 cut(s) 140, 171, 741, 767, 951
BsaWI WCCGGW 1 cut(s) 1334
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 599
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 528
Bse3DI GCAATG 2 cut(s) 1138, 1359
BseCI ATCGAT 1 cut(s) 468
BseDI CCNNGG 5 cut(s) 140, 171, 741, 767, 951
BseGI GGATG 7 cut(s) 253, 439, 523, 661, 742, 858, 1306
BseLI CCNNNNNNNGG 2 cut(s) 191, 599
BseMI GCAATG 2 cut(s) 1138, 1359
BseMII CTCAG 2 cut(s) 450, 1422
BseNI ACTGG 1 cut(s) 528
BseRI GAGGAG 4 cut(s) 82, 488, 722, 1136
BseXI GCAGC 3 cut(s) 484, 829, 1232
BseYI CCCAGC 1 cut(s) 1221
BshFI GGCC 3 cut(s) 176, 950, 1319
BshNI GGYRCC 1 cut(s) 589
BshVI ATCGAT 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 1297
BsiSI CCGG 3 cut(s) 192, 741, 1335
BslFI GGGAC 2 cut(s) 748, 954
BslI CCNNNNNNNGG 2 cut(s) 191, 599
BsmAI GTCTC 2 cut(s) 92, 897
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 2 cut(s) 748, 954
BsnI GGCC 3 cut(s) 176, 950, 1319
Bsp119I TTCGAA 1 cut(s) 1089
Bsp1286I GDGCHC 1 cut(s) 1297
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 4 cut(s) 256, 553, 811, 1374
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 5 cut(s) 137, 683, 734, 914, 1171
BspANI GGCC 3 cut(s) 176, 950, 1319
BspCNI CTCAG 2 cut(s) 451, 1423
BspDI ATCGAT 1 cut(s) 468
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 591, 1333
BspMI ACCTGC 1 cut(s) 639
BspPI GGATC 2 cut(s) 819, 1382
BspQI GCTCTTC 1 cut(s) 641
BspT104I TTCGAA 1 cut(s) 1089
BspT107I GGYRCC 1 cut(s) 589
BsrBI CCGCTC 1 cut(s) 916
BsrDI GCAATG 2 cut(s) 1138, 1359
BsrFI RCCGGY 1 cut(s) 191
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 1 cut(s) 528
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 5 cut(s) 140, 171, 741, 767, 951
BssMI GATC 4 cut(s) 256, 553, 811, 1374
BssNI GRCGYC 3 cut(s) 201, 214, 1045
BssT1I CCWWGG 3 cut(s) 171, 767, 951
Bst4CI ACNGT 2 cut(s) 452, 643
Bst6I CTCTTC 4 cut(s) 49, 100, 641, 803
BstACI GRCGYC 3 cut(s) 201, 214, 1045
BstAUI TGTACA 1 cut(s) 582
BstBAI YACGTR 1 cut(s) 697
BstBI TTCGAA 1 cut(s) 1089
BstC8I GCNNGC 4 cut(s) 193, 659, 1169, 1366
BstDEI CTNAG 2 cut(s) 459, 1431
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 7 cut(s) 253, 439, 523, 661, 742, 858, 1306
BstKTI GATC 4 cut(s) 259, 556, 814, 1377
BstMAI GTCTC 2 cut(s) 92, 897
BstMBI GATC 4 cut(s) 256, 553, 811, 1374
BstMWI GCNNNNNNNGC 4 cut(s) 32, 188, 379, 1015
BstNSI RCATGY 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 740
BstSFI CTRYAG 1 cut(s) 1197
BstSNI TACGTA 1 cut(s) 697
BstV1I GCAGC 3 cut(s) 484, 829, 1232
BstV2I GAAGAC 3 cut(s) 5, 1048, 1098
BstXI CCANNNNNNTGG 2 cut(s) 417, 1217
Bsu15I ATCGAT 1 cut(s) 468
BsuI GTATCC 1 cut(s) 539
BsuRI GGCC 3 cut(s) 176, 950, 1319
BsuTUI ATCGAT 1 cut(s) 468
BtgI CCRYGG 1 cut(s) 171
BtgZI GCGATG 1 cut(s) 990
BtsCI GGATG 7 cut(s) 253, 439, 523, 661, 742, 858, 1306
BtsIMutI CAGTG 2 cut(s) 346, 639
BveI ACCTGC 1 cut(s) 639
Cac8I GCNNGC 4 cut(s) 193, 659, 1169, 1366
CciI TCATGA 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 191
ClaI ATCGAT 1 cut(s) 468
CseI GACGC 3 cut(s) 209, 222, 1034
Csp6I GTAC 2 cut(s) 583, 1349
CviAII CATG 7 cut(s) 172, 196, 272, 577, 617, 815, 850
CviQI GTAC 2 cut(s) 583, 1349
DdeI CTNAG 2 cut(s) 459, 1431
DpnI GATC 4 cut(s) 258, 555, 813, 1376
DpnII GATC 4 cut(s) 256, 553, 811, 1374
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 4 cut(s) 49, 100, 641, 803
EarI CTCTTC 4 cut(s) 49, 100, 641, 803
EciI GGCGGA 2 cut(s) 126, 749
Ecl136II GAGCTC 1 cut(s) 1295
Eco105I TACGTA 1 cut(s) 697
Eco130I CCWWGG 3 cut(s) 171, 767, 951
Eco24I GRGCYC 1 cut(s) 1297
Eco32I GATATC 1 cut(s) 688
Eco53kI GAGCTC 1 cut(s) 1295
Eco57I CTGAAG 4 cut(s) 362, 558, 776, 987
EcoICRI GAGCTC 1 cut(s) 1295
EcoRI GAATTC 1 cut(s) 1413
EcoRV GATATC 1 cut(s) 688
EcoT14I CCWWGG 3 cut(s) 171, 767, 951
EcoT38I GRGCYC 1 cut(s) 1297
ErhI CCWWGG 3 cut(s) 171, 767, 951
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 7 cut(s) 175, 199, 275, 580, 620, 818, 853
FaqI GGGAC 2 cut(s) 748, 954
FatI CATG 7 cut(s) 171, 195, 271, 576, 616, 814, 849
FbaI TGATCA 1 cut(s) 553
FblI GTMKAC 1 cut(s) 1048
Fnu4HI GCNGC 4 cut(s) 498, 843, 914, 1246
FokI GGATG 7 cut(s) 260, 426, 530, 648, 749, 845, 1293
FriOI GRGCYC 1 cut(s) 1297
Fsp4HI GCNGC 4 cut(s) 498, 843, 914, 1246
FspBI CTAG 2 cut(s) 242, 779
GluI GCNGC 4 cut(s) 498, 843, 914, 1246
GsaI CCCAGC 1 cut(s) 1225
HaeIII GGCC 3 cut(s) 176, 950, 1319
HapII CCGG 3 cut(s) 192, 741, 1335
HgaI GACGC 3 cut(s) 209, 222, 1034
Hin1I GRCGYC 3 cut(s) 201, 214, 1045
Hin1II CATG 7 cut(s) 175, 199, 275, 580, 620, 818, 853
HincII GTYRAC 1 cut(s) 1049
HindII GTYRAC 1 cut(s) 1049
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 2 cut(s) 311, 455
HpaII CCGG 3 cut(s) 192, 741, 1335
HphI GGTGA 2 cut(s) 1016, 1300
Hpy166II GTNNAC 5 cut(s) 420, 700, 787, 1049, 1153
Hpy188I TCNGA 7 cut(s) 316, 460, 598, 756, 776, 1035, 1419
Hpy188III TCNNGA 3 cut(s) 272, 1062, 1118
Hpy8I GTNNAC 5 cut(s) 420, 700, 787, 1049, 1153
Hpy99I CGWCG 5 cut(s) 216, 230, 233, 991, 1050
HpyAV CCTTC 9 cut(s) 58, 135, 143, 603, 709, 724, 743, 1309, 1321
HpyCH4III ACNGT 2 cut(s) 452, 643
HpyCH4IV ACGT 2 cut(s) 385, 696
HpyCH4V TGCA 6 cut(s) 392, 661, 980, 1178, 1248, 1400
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 188, 379, 1015
HpyF3I CTNAG 2 cut(s) 459, 1431
HpySE526I ACGT 2 cut(s) 385, 696
Hsp92I GRCGYC 3 cut(s) 201, 214, 1045
Hsp92II CATG 7 cut(s) 175, 199, 275, 580, 620, 818, 853
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 4 cut(s) 256, 553, 811, 1374
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 2 cut(s) 718, 921
Lsp1109I GCAGC 3 cut(s) 484, 829, 1232
LweI GCATC 6 cut(s) 171, 178, 670, 727, 967, 1246
MaeI CTAG 2 cut(s) 242, 779
MaeII ACGT 2 cut(s) 385, 696
MaeIII GTNAC 5 cut(s) 290, 400, 955, 1072, 1277
MalI GATC 4 cut(s) 258, 555, 813, 1376
MbiI CCGCTC 1 cut(s) 916
MboI GATC 4 cut(s) 256, 553, 811, 1374
MhlI GDGCHC 1 cut(s) 1297
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 3 cut(s) 286, 790, 1413
MluNI TGGCCA 1 cut(s) 176
MnlI CCTC 9 cut(s) 103, 135, 466, 700, 720, 739, 806, 879, 1114
Mox20I TGGCCA 1 cut(s) 176
MroNI GCCGGC 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 237
MscI TGGCCA 1 cut(s) 176
MseI TTAA 3 cut(s) 18, 1079, 1269
MslI CAYNNNNRTG 2 cut(s) 415, 1286
Msp20I TGGCCA 1 cut(s) 176
MspI CCGG 3 cut(s) 192, 741, 1335
MspR9I CCNGG 1 cut(s) 742
MwoI GCNNNNNNNGC 4 cut(s) 32, 188, 379, 1015
NaeI GCCGGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 742
NcoI CCATGG 1 cut(s) 171
NdeII GATC 4 cut(s) 256, 553, 811, 1374
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 7 cut(s) 175, 199, 275, 580, 620, 818, 853
NlaIV GGNNCC 2 cut(s) 591, 1333
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 2 cut(s) 290, 1277
NspI RCATGY 1 cut(s) 580
NspV TTCGAA 1 cut(s) 1089
OliI CACNNNNGTG 1 cut(s) 415
PagI TCATGA 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 641
PdiI GCCGGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 2 cut(s) 311, 455
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 4 cut(s) 499, 844, 915, 1247
Ppu21I YACGTR 1 cut(s) 697
PshBI ATTAAT 1 cut(s) 1269
Psp124BI GAGCTC 1 cut(s) 1297
Psp1406I AACGTT 1 cut(s) 385
PspFI CCCAGC 1 cut(s) 1221
PspN4I GGNNCC 2 cut(s) 591, 1333
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 2 cut(s) 584, 1350
RsaNI GTAC 2 cut(s) 583, 1349
RseI CAYNNNNRTG 2 cut(s) 415, 1286
SacI GAGCTC 1 cut(s) 1297
SalI GTCGAC 1 cut(s) 1047
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 3 cut(s) 18, 1079, 1269
SatI GCNGC 4 cut(s) 498, 843, 914, 1246
Sau3AI GATC 4 cut(s) 256, 553, 811, 1374
ScrFI CCNGG 1 cut(s) 742
SduI GDGCHC 1 cut(s) 1297
SfaNI GCATC 6 cut(s) 171, 178, 670, 727, 967, 1246
SfcI CTRYAG 1 cut(s) 1197
SfuI TTCGAA 1 cut(s) 1089
SmiMI CAYNNNNRTG 2 cut(s) 415, 1286
SmlI CTYRAG 2 cut(s) 1019, 1118
SmoI CTYRAG 2 cut(s) 1019, 1118
SnaBI TACGTA 1 cut(s) 697
SpeI ACTAGT 1 cut(s) 778
Sse9I AATT 3 cut(s) 286, 790, 1413
SsiI CCGC 5 cut(s) 137, 683, 734, 914, 1171
SspI AATATT 1 cut(s) 1182
SspMI CTAG 2 cut(s) 242, 779
SstI GAGCTC 1 cut(s) 1297
StyD4I CCNGG 1 cut(s) 740
StyI CCWWGG 3 cut(s) 171, 767, 951
TaaI ACNGT 2 cut(s) 452, 643
TaiI ACGT 2 cut(s) 388, 699
TaqI TCGA 4 cut(s) 225, 468, 1048, 1089
TasI AATT 3 cut(s) 286, 790, 1413
TatI WGTACW 1 cut(s) 582
TauI GCSGC 1 cut(s) 916
TfiI GAWTC 2 cut(s) 311, 455
Tru1I TTAA 3 cut(s) 18, 1079, 1269
Tru9I TTAA 3 cut(s) 18, 1079, 1269
TscAI CASTG 2 cut(s) 346, 646
TseFI GTSAC 2 cut(s) 290, 1277
TseI GCWGC 3 cut(s) 497, 842, 1245
Tsp45I GTSAC 2 cut(s) 290, 1277
TspDTI ATGAA 8 cut(s) 59, 65, 71, 534, 633, 690, 866, 1328
TspGWI ACGGA 2 cut(s) 141, 887
TspRI CASTG 2 cut(s) 346, 646
Tth111I GACNNNGTC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 1269
XapI RAATTY 1 cut(s) 1413
XceI RCATGY 1 cut(s) 580
XmiI GTMKAC 1 cut(s) 1048
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 2 cut(s) 242, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.