Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009079

Physical Location & Seq

Genomic Coordinates Reverse (-)

30466737 .. 30469971

Gene Structure 3235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G361700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGACTCTCACCACAGGAGCAGGCCTTCTTAACACCGCAGCCAGACTCTCCTTCTTCCACAAATCTCACCATCATTATCCCCTTCTCTTTTCAAATTCTCCTTCTCTCCGGTTCTCACCAACCTCTCTCATCTCCAACCCCACCTCCTTCGCTTCTCTCCCTGCCAGGCTATCTCTGTCTTTTAACGCCTCCACCATGGCCGACGCTCCTGATGCCGGCATGGACGCCGTCCAGCGCCGCCTCATGTTCGAAGACGAATGTATTCTGGTGGATGAGAATGATCGTGTTGTTGGTCATGATACCAAATACAACTGTCACTTGATGGAAAAGATTGAATCCGAAAATTTACTTCACAGAGCTTTCAGCGTCTTTTTGTTTAACTCAAAGAATGAGTTGCTTCTTCAGCAACGTTCTGCAACAAAGGTGACATTCCCACTTGTGTGGACAAACACCTGTTGTAGCCATCCACTGTACCGTGAATCTGAGCTTATTGATGAGAATTCTCTTGGGGTAAGAAATGCTGCTCAAAGGAAGCTTTTGGATGAATTGGGCATCCCTGCTGAAGATGTGCCGGTTGATCAGTTCATCCCTTTGGGTCGGATTTTGTACAAGGCACCTTCTGACGGCAAGTGGGGAGAACACGAACTTGATTACCTTCTCTTCACGGTCCGAGATGTTAATGTGCATCCAAACCCTGACGAAGTAGCTGATATCAAATATGTAAATCAAGAGCAGCTGAAGGAGCTGCTGAGGAAGGCAGATGCTGGGGAGGAAGGTCTGAAGCTGTCCCCTTGGTTCAGACTCGTTGTGGACAACTTCTTGTTCAAATGGTGGGACAATGTTGAGAAAGGCACCATCAAGGAAGCTGCTGACATGAAAACCATCCACAGGTTGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

NUDIX

Protein Analysis

300

Amino Acids

34.0

Weight (kDa)

5.67

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02780 AT3G02780 AT5G16440
fragaria_vesca	FvH4_6g00470
malus_domestica	MD04G1245100.v1.1 MD12G1086800.v1.1
prunus_persica	Prupe.6G361700_v2.0.a1 Prupe.6G361700_v2.0.a1 Prupe.6G361700_v2.0.a1
pyrus_communis	pycom04g21580 pycom12g23880
rosa_chinensis	RchiOBHm_Chr3g0447851
rosa_laevigata	RLG00000025966
rosa_multiflora	Rmu_co8057268.1_g000001 Rmu_ssc0000391.1_g000034
rosa_roxburghii	Rroxscaffold_6G00426050
rosa_rugosa	Rorug02G0606500
rosa_samantha	Rh3AG005700 Rh3BG005400 Rh3CG005600 Rh3DG005900
rosa_wichuraiana	Rw3G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	613, 851
AciI	CCGC	2 cut(s)	36, 238
AclI	AACGTT	1 cut(s)	409
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	3 cut(s)	94, 343, 499
AcuI	CTGAAG	4 cut(s)	386, 582, 758, 800
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	473, 608
AfiI	CCNNNNNNNGG	3 cut(s)	215, 623, 888
AgsI	TTSAA	3 cut(s)	93, 335, 826
AjnI	CCWGG	1 cut(s)	164
AleI	CACNNNNGTG	1 cut(s)	439
AluBI	AGCT	8 cut(s)	359, 487, 535, 707, 736, 745, 784, 866
AluI	AGCT	8 cut(s)	359, 487, 535, 707, 736, 745, 784, 866
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	2 cut(s)	22, 198
ApeKI	GCWGC	5 cut(s)	38, 521, 733, 745, 866
ApoI	RAATTY	3 cut(s)	94, 343, 499
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	667
AsuHPI	GGTGA	3 cut(s)	59, 108, 436
AsuII	TTCGAA	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	667
BanI	GGYRCC	2 cut(s)	613, 851
BbsI	GAAGAC	1 cut(s)	258
BbvCI	CCTCAGC	1 cut(s)	749
BbvI	GCAGC	5 cut(s)	50, 508, 732, 745, 853
BccI	CCATC	5 cut(s)	78, 316, 471, 863, 890
BceAI	ACGGC	2 cut(s)	212, 640
BciT130I	CCWGG	1 cut(s)	166
BclI	TGATCA	1 cut(s)	577
BfoI	RGCGCY	1 cut(s)	238
BisI	GCNGC	6 cut(s)	39, 238, 522, 734, 746, 867
BlsI	GCNGC	6 cut(s)	40, 239, 523, 735, 747, 868
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	667
BmgT120I	GGNCC	1 cut(s)	667
BmiI	GGNNCC	2 cut(s)	615, 853
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	4 cut(s)	202, 561, 694, 751
BpiI	GAAGAC	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	749
Bpu14I	TTCGAA	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	195, 791
BsaWI	WCCGGW	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 623, 888
Bse118I	RCCGGY	2 cut(s)	215, 571
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	195, 791
BseGI	GGATG	7 cut(s)	277, 463, 547, 552, 585, 685, 882
BseLI	CCNNNNNNNGG	3 cut(s)	215, 623, 888
BseMII	CTCAG	2 cut(s)	474, 740
BseXI	GCAGC	5 cut(s)	50, 508, 732, 745, 853
BseYI	CCCAGC	1 cut(s)	764
BshFI	GGCC	2 cut(s)	24, 200
BshNI	GGYRCC	2 cut(s)	613, 851
BsiSI	CCGG	3 cut(s)	109, 216, 572
BslFI	GGGAC	2 cut(s)	772, 848
BslI	CCNNNNNNNGG	3 cut(s)	215, 623, 888
BsmFI	GGGAC	2 cut(s)	772, 848
BsnI	GGCC	2 cut(s)	24, 200
Bsp119I	TTCGAA	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	2 cut(s)	280, 577
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	2 cut(s)	36, 238
BspANI	GGCC	2 cut(s)	24, 200
BspCNI	CTCAG	2 cut(s)	475, 741
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	615, 853
BspT104I	TTCGAA	1 cut(s)	249
BspT107I	GGYRCC	2 cut(s)	613, 851
BsrFI	RCCGGY	2 cut(s)	215, 571
BsrGI	TGTACA	1 cut(s)	606
BssAI	RCCGGY	2 cut(s)	215, 571
BssECI	CCNNGG	2 cut(s)	195, 791
BssMI	GATC	2 cut(s)	280, 577
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	195, 791
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	4 cut(s)	314, 471, 476, 667
Bst6I	CTCTTC	1 cut(s)	665
BstACI	GRCGYC	1 cut(s)	225
BstAUI	TGTACA	1 cut(s)	606
BstBI	TTCGAA	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	22, 217
BstDEI	CTNAG	2 cut(s)	483, 749
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	7 cut(s)	277, 463, 547, 552, 585, 685, 882
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	2 cut(s)	283, 580
BstMBI	GATC	2 cut(s)	280, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 403, 742
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstV1I	GCAGC	5 cut(s)	50, 508, 732, 745, 853
BstV2I	GAAGAC	1 cut(s)	258
BstXI	CCANNNNNNTGG	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	24, 200
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	7 cut(s)	277, 463, 547, 552, 585, 685, 882
BtsIMutI	CAGTG	1 cut(s)	467
Cac8I	GCNNGC	2 cut(s)	22, 217
CaiI	CAGNNNCTG	1 cut(s)	764
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	2 cut(s)	215, 571
Cfr13I	GGNCC	1 cut(s)	667
CpoI	CGGWCCG	1 cut(s)	667
CseI	GACGC	3 cut(s)	212, 233, 355
Csp6I	GTAC	2 cut(s)	472, 607
CspI	CGGWCCG	1 cut(s)	667
CviAII	CATG	5 cut(s)	196, 220, 244, 296, 874
CviQI	GTAC	2 cut(s)	472, 607
DdeI	CTNAG	2 cut(s)	483, 749
DpnI	GATC	2 cut(s)	282, 579
DpnII	GATC	2 cut(s)	280, 577
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	665
EarI	CTCTTC	1 cut(s)	665
Eco130I	CCWWGG	2 cut(s)	195, 791
Eco147I	AGGCCT	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	667
Eco57I	CTGAAG	4 cut(s)	386, 582, 758, 800
EcoRI	GAATTC	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	164
EcoRV	GATATC	1 cut(s)	712
EcoT14I	CCWWGG	2 cut(s)	195, 791
ErhI	CCWWGG	2 cut(s)	195, 791
FaeI	CATG	5 cut(s)	199, 223, 247, 299, 877
FaiI	YATR	6 cut(s)	197, 221, 245, 297, 720, 875
FaqI	GGGAC	2 cut(s)	772, 848
FatI	CATG	5 cut(s)	195, 219, 243, 295, 873
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	6 cut(s)	39, 238, 522, 734, 746, 867
FokI	GGATG	7 cut(s)	284, 450, 539, 554, 572, 672, 869
Fsp4HI	GCNGC	6 cut(s)	39, 238, 522, 734, 746, 867
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	6 cut(s)	39, 238, 522, 734, 746, 867
GsaI	CCCAGC	1 cut(s)	768
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	24, 200
HapII	CCGG	3 cut(s)	109, 216, 572
HgaI	GACGC	3 cut(s)	212, 233, 355
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	5 cut(s)	199, 223, 247, 299, 877
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	894
HindII	GTYRAC	1 cut(s)	894
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	5 cut(s)	4, 45, 335, 479, 801
HpaII	CCGG	3 cut(s)	109, 216, 572
HphI	GGTGA	3 cut(s)	59, 108, 436
Hpy166II	GTNNAC	3 cut(s)	444, 811, 894
Hpy188I	TCNGA	7 cut(s)	340, 484, 600, 622, 671, 780, 800
Hpy188III	TCNNGA	3 cut(s)	209, 296, 728
Hpy8I	GTNNAC	3 cut(s)	444, 811, 894
Hpy99I	CGWCG	1 cut(s)	206
HpyCH4III	ACNGT	4 cut(s)	314, 471, 476, 667
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	2 cut(s)	416, 685
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 403, 742
HpyF3I	CTNAG	2 cut(s)	483, 749
HpySE526I	ACGT	1 cut(s)	409
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	5 cut(s)	199, 223, 247, 299, 877
HspAI	GCGC	1 cut(s)	235
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	2 cut(s)	280, 577
LmnI	GCTCC	3 cut(s)	17, 211, 742
Lsp1109I	GCAGC	5 cut(s)	50, 508, 732, 745, 853
LweI	GCATC	4 cut(s)	202, 561, 694, 751
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	2 cut(s)	314, 424
MalI	GATC	2 cut(s)	282, 579
MboI	GATC	2 cut(s)	280, 577
MboII	GAAGA	5 cut(s)	46, 263, 392, 575, 652
MluCI	AATT	4 cut(s)	94, 343, 499, 545
MlyI	GAGTC	2 cut(s)	39, 795
MmeI	TCCRAC	2 cut(s)	159, 578
MnlI	CCTC	6 cut(s)	133, 154, 199, 251, 744, 763
MroNI	GCCGGC	1 cut(s)	215
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	5 cut(s)	30, 183, 378, 678, 898
MslI	CAYNNNNRTG	1 cut(s)	439
MspA1I	CMGCKG	1 cut(s)	736
MspI	CCGG	3 cut(s)	109, 216, 572
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	3 cut(s)	212, 403, 742
NaeI	GCCGGC	1 cut(s)	217
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	2 cut(s)	280, 577
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	5 cut(s)	199, 223, 247, 299, 877
NlaIV	GGNNCC	2 cut(s)	615, 853
NmuCI	GTSAC	2 cut(s)	314, 424
NspV	TTCGAA	1 cut(s)	249
OliI	CACNNNNGTG	1 cut(s)	439
PagI	TCATGA	1 cut(s)	295
PceI	AGGCCT	1 cut(s)	24
PdiI	GCCGGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	335, 479
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	6 cut(s)	40, 239, 523, 735, 747, 868
PleI	GAGTC	2 cut(s)	39, 795
PpsI	GAGTC	2 cut(s)	39, 795
Psp1406I	AACGTT	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	615, 853
PspPI	GGNCC	1 cut(s)	667
PstNI	CAGNNNCTG	1 cut(s)	764
PsyI	GACNNNGTC	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	736
RsaI	GTAC	2 cut(s)	473, 608
RsaNI	GTAC	2 cut(s)	472, 607
RseI	CAYNNNNRTG	1 cut(s)	439
Rsr2I	CGGWCCG	1 cut(s)	667
RsrII	CGGWCCG	1 cut(s)	667
SaqAI	TTAA	5 cut(s)	30, 183, 378, 678, 898
SatI	GCNGC	6 cut(s)	39, 238, 522, 734, 746, 867
Sau3AI	GATC	2 cut(s)	280, 577
Sau96I	GGNCC	1 cut(s)	667
SchI	GAGTC	2 cut(s)	39, 795
ScrFI	CCNGG	1 cut(s)	166
SfaNI	GCATC	4 cut(s)	202, 561, 694, 751
SfuI	TTCGAA	1 cut(s)	249
SinI	GGWCC	1 cut(s)	667
SmiMI	CAYNNNNRTG	1 cut(s)	439
Sse9I	AATT	4 cut(s)	94, 343, 499, 545
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	2 cut(s)	36, 238
StuI	AGGCCT	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	2 cut(s)	195, 791
TaaI	ACNGT	4 cut(s)	314, 471, 476, 667
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	1 cut(s)	249
TasI	AATT	4 cut(s)	94, 343, 499, 545
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	335, 479
Tru1I	TTAA	5 cut(s)	30, 183, 378, 678, 898
Tru9I	TTAA	5 cut(s)	30, 183, 378, 678, 898
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	2 cut(s)	314, 424
TseI	GCWGC	5 cut(s)	38, 521, 733, 745, 866
Tsp45I	GTSAC	2 cut(s)	314, 424
TspDTI	ATGAA	3 cut(s)	558, 574, 890
TspRI	CASTG	1 cut(s)	474
Tth111I	GACNNNGTC	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	667
XapI	RAATTY	3 cut(s)	94, 343, 499
XmnI	GAANNNNTTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.