Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009079

Physical Location & Seq

Genomic Coordinates Reverse (-)

22674693 .. 22677446

Gene Structure 2754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21580.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAGTCCCACCACTACTCGCCTTCTCCACACAATCTCCTTCTTCCCCAAATCTCCTCCTCCTCTCTTCTCATCCGCTGCGACTCGAATCTCTTCCTTCTCCAAGCCCTCCGCATTCCCCTCCCTCTCCGCCAGGCTATCCCTCTCTTTTCACATCTCCACCATGGCCGACGCTCCCGACGCCGGCATGGACGCCGTCCAGCGCCGCCTCATGTTCGAAGACGAATGTATTCTGGTGGATGAGAATGATCGTGTTGTAGGTCACGACACCAAGTACAATTGTCACTTGATGGAAAAGATCGATCAACAATCTGAAAATTTGCTTCACAGAGCTTTCAGTGTCTTTTTGTTTAACTCAAAGCATGAGTTGCTTCTTCAGCAACGTTCTGCAACCAAGGTAACATTTCCACTTGTGTGGACAAACACCTGTTGCAGCCATCCGCTGTACCGTGAATCCGAGCTTATTGATGAGAACTCTCTTGGGGTAAGAAACGCTGCTCAAAGGAAGCTTTTGGATGAACTCGGTATTCCTGCTGAAGATGTGCCAGTTGATCAGTTTATCCCGTTGGGTCGCATGCTGTACAAGGCACCTTCTGATGGCAAGTGGGGAGAACATGAACTTGATTACCTTCTCTTCACTGTACGAGATGTTAATGTGCATCCGAACCCTGATGAGGTAGCTGATATCAAGTACGTAAACAAGGAGCAGCTGAAAGAGCTGTTGAGGAAGGCAGATGCCGGGGAGGAAGGTCTGAAGCTGTCGCCTTGGTTCAGGCTCGTTGTGGACAACTTCTTGTTCAAGTGGTGGGACCATGTTGAGAAAAACACCATCAAGGAAGCTGCTGACATGAAAACCATCCACAGGTTGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

NUDIX

Protein Analysis

291

Amino Acids

33.18

Weight (kDa)

5.89

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02780 AT3G02780 AT5G16440
fragaria_vesca	FvH4_6g00470
malus_domestica	MD04G1245100.v1.1 MD12G1086800.v1.1
prunus_persica	Prupe.6G361700_v2.0.a1 Prupe.6G361700_v2.0.a1 Prupe.6G361700_v2.0.a1
pyrus_communis	pycom04g21580 pycom12g23880
rosa_chinensis	RchiOBHm_Chr3g0447851
rosa_laevigata	RLG00000025966
rosa_multiflora	Rmu_co8057268.1_g000001 Rmu_ssc0000391.1_g000034
rosa_roxburghii	Rroxscaffold_6G00426050
rosa_rugosa	Rorug02G0606500
rosa_samantha	Rh3AG005700 Rh3BG005400 Rh3CG005600 Rh3DG005900
rosa_wichuraiana	Rw3G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	586
AciI	CCGC	5 cut(s)	75, 111, 129, 205, 440
AclI	AACGTT	1 cut(s)	382
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	3 cut(s)	359, 555, 773
AcyI	GRCGYC	2 cut(s)	180, 192
AfaI	GTAC	5 cut(s)	275, 446, 581, 642, 692
AfiI	CCNNNNNNNGG	4 cut(s)	182, 596, 673, 861
AgsI	TTSAA	1 cut(s)	799
AjnI	CCWGG	1 cut(s)	131
AleI	CACNNNNGTG	1 cut(s)	412
AluBI	AGCT	8 cut(s)	332, 460, 508, 680, 709, 718, 757, 839
AluI	AGCT	8 cut(s)	332, 460, 508, 680, 709, 718, 757, 839
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	5 cut(s)	77, 432, 494, 706, 839
ApoI	RAATTY	1 cut(s)	316
Asp700I	GAANNNNTTC	2 cut(s)	91, 228
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	808
AsuC2I	CCSGG	1 cut(s)	739
AsuII	TTCGAA	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	808
BanI	GGYRCC	1 cut(s)	586
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	5 cut(s)	64, 444, 481, 718, 826
BccI	CCATC	5 cut(s)	283, 444, 590, 836, 863
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	133
BclI	TGATCA	1 cut(s)	550
BcnI	CCSGG	1 cut(s)	739
BfoI	RGCGCY	1 cut(s)	205
BisI	GCNGC	6 cut(s)	78, 205, 433, 495, 707, 840
BlsI	GCNGC	6 cut(s)	79, 206, 434, 496, 708, 841
Bme1390I	CCNGG	2 cut(s)	133, 739
Bme18I	GGWCC	1 cut(s)	808
BmgT120I	GGNCC	1 cut(s)	808
BmiI	GGNNCC	2 cut(s)	588, 809
BmrFI	CCNGG	2 cut(s)	133, 739
BmsI	GCATC	2 cut(s)	667, 724
BpiI	GAAGAC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	739
Bsa29I	ATCGAT	1 cut(s)	300
BsaAI	YACGTR	1 cut(s)	694
BsaHI	GRCGYC	2 cut(s)	180, 192
BsaJI	CCNNGG	4 cut(s)	162, 393, 738, 764
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 596, 673, 861
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	545
BseBI	CCWGG	1 cut(s)	133
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	4 cut(s)	162, 393, 738, 764
BseGI	GGATG	6 cut(s)	71, 244, 436, 520, 658, 855
BseLI	CCNNNNNNNGG	4 cut(s)	182, 596, 673, 861
BseNI	ACTGG	1 cut(s)	545
BseRI	GAGGAG	3 cut(s)	45, 48, 51
BseXI	GCAGC	5 cut(s)	64, 444, 481, 718, 826
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	586
BshVI	ATCGAT	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	183, 738
BslFI	GGGAC	1 cut(s)	821
BslI	CCNNNNNNNGG	4 cut(s)	182, 596, 673, 861
BsmFI	GGGAC	1 cut(s)	821
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	167
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	247, 297, 301, 550
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	5 cut(s)	75, 111, 129, 205, 440
BspANI	GGCC	1 cut(s)	167
BspDI	ATCGAT	1 cut(s)	300
BspLI	GGNNCC	2 cut(s)	588, 809
BspT104I	TTCGAA	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	586
BsrFI	RCCGGY	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	4 cut(s)	162, 393, 738, 764
BssMI	GATC	4 cut(s)	247, 297, 301, 550
BssNI	GRCGYC	2 cut(s)	180, 192
BssT1I	CCWWGG	3 cut(s)	162, 393, 764
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	2 cut(s)	449, 640
Bst6I	CTCTTC	3 cut(s)	71, 97, 638
BstACI	GRCGYC	2 cut(s)	180, 192
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstAUI	TGTACA	1 cut(s)	579
BstBAI	YACGTR	1 cut(s)	694
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	184, 575
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	6 cut(s)	71, 244, 436, 520, 658, 855
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	4 cut(s)	250, 300, 304, 553
BstMBI	GATC	4 cut(s)	247, 297, 301, 550
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 367, 376, 715
BstNI	CCWGG	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	2 cut(s)	131, 737
BstSNI	TACGTA	1 cut(s)	694
BstV1I	GCAGC	5 cut(s)	64, 444, 481, 718, 826
BstV2I	GAAGAC	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	414
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	167
BsuTUI	ATCGAT	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	6 cut(s)	71, 244, 436, 520, 658, 855
BtsIMutI	CAGTG	2 cut(s)	343, 636
Cac8I	GCNNGC	2 cut(s)	184, 575
CfoI	GCGC	1 cut(s)	204
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	808
ClaI	ATCGAT	1 cut(s)	300
CseI	GACGC	3 cut(s)	179, 188, 200
Csp6I	GTAC	5 cut(s)	274, 445, 580, 641, 691
CviAII	CATG	8 cut(s)	163, 187, 211, 362, 574, 614, 812, 847
CviQI	GTAC	5 cut(s)	274, 445, 580, 641, 691
DpnI	GATC	4 cut(s)	249, 299, 303, 552
DpnII	GATC	4 cut(s)	247, 297, 301, 550
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	3 cut(s)	71, 97, 638
EarI	CTCTTC	3 cut(s)	71, 97, 638
EciI	GGCGGA	1 cut(s)	118
Eco105I	TACGTA	1 cut(s)	694
Eco130I	CCWWGG	3 cut(s)	162, 393, 764
Eco32I	GATATC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	808
Eco57I	CTGAAG	3 cut(s)	359, 555, 773
EcoRII	CCWGG	1 cut(s)	131
EcoRV	GATATC	1 cut(s)	685
EcoT14I	CCWWGG	3 cut(s)	162, 393, 764
ErhI	CCWWGG	3 cut(s)	162, 393, 764
FaeI	CATG	8 cut(s)	166, 190, 214, 365, 577, 617, 815, 850
FaiI	YATR	8 cut(s)	164, 188, 212, 363, 575, 615, 813, 848
FaqI	GGGAC	1 cut(s)	821
FatI	CATG	8 cut(s)	162, 186, 210, 361, 573, 613, 811, 846
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	6 cut(s)	78, 205, 433, 495, 707, 840
FokI	GGATG	6 cut(s)	58, 251, 423, 527, 645, 842
Fsp4HI	GCNGC	6 cut(s)	78, 205, 433, 495, 707, 840
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	6 cut(s)	78, 205, 433, 495, 707, 840
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	2 cut(s)	183, 738
HgaI	GACGC	3 cut(s)	179, 188, 200
HhaI	GCGC	1 cut(s)	204
Hin1I	GRCGYC	2 cut(s)	180, 192
Hin1II	CATG	8 cut(s)	166, 190, 214, 365, 577, 617, 815, 850
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	867
HindII	GTYRAC	1 cut(s)	867
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	4 cut(s)	4, 82, 87, 452
HpaII	CCGG	2 cut(s)	183, 738
Hpy166II	GTNNAC	4 cut(s)	417, 697, 784, 867
Hpy188I	TCNGA	5 cut(s)	313, 457, 595, 663, 753
Hpy188III	TCNNGA	2 cut(s)	176, 263
Hpy8I	GTNNAC	4 cut(s)	417, 697, 784, 867
Hpy99I	CGWCG	2 cut(s)	173, 182
HpyAV	CCTTC	7 cut(s)	32, 49, 106, 600, 638, 721, 740
HpyCH4III	ACNGT	2 cut(s)	449, 640
HpyCH4IV	ACGT	2 cut(s)	382, 693
HpyCH4V	TGCA	3 cut(s)	389, 432, 658
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 367, 376, 715
HpySE526I	ACGT	2 cut(s)	382, 693
Hsp92I	GRCGYC	2 cut(s)	180, 192
Hsp92II	CATG	8 cut(s)	166, 190, 214, 365, 577, 617, 815, 850
HspAI	GCGC	1 cut(s)	202
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	4 cut(s)	247, 297, 301, 550
LmnI	GCTCC	2 cut(s)	178, 703
Lsp1109I	GCAGC	5 cut(s)	64, 444, 481, 718, 826
LweI	GCATC	2 cut(s)	667, 724
MaeII	ACGT	2 cut(s)	382, 693
MaeIII	GTNAC	3 cut(s)	260, 281, 397
MalI	GATC	4 cut(s)	249, 299, 303, 552
MboI	GATC	4 cut(s)	247, 297, 301, 550
MboII	GAAGA	7 cut(s)	34, 58, 84, 230, 365, 548, 625
MfeI	CAATTG	1 cut(s)	277
MluCI	AATT	2 cut(s)	277, 316
MlyI	GAGTC	2 cut(s)	13, 76
MroNI	GCCGGC	1 cut(s)	182
MroXI	GAANNNNTTC	2 cut(s)	91, 228
MseI	TTAA	3 cut(s)	351, 651, 871
MslI	CAYNNNNRTG	1 cut(s)	412
MspA1I	CMGCKG	3 cut(s)	77, 442, 709
MspI	CCGG	2 cut(s)	183, 738
MspR9I	CCNGG	2 cut(s)	133, 739
MunI	CAATTG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	4 cut(s)	179, 367, 376, 715
NaeI	GCCGGC	1 cut(s)	184
NciI	CCSGG	1 cut(s)	739
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	247, 297, 301, 550
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	8 cut(s)	166, 190, 214, 365, 577, 617, 815, 850
NlaIV	GGNNCC	2 cut(s)	588, 809
NmuCI	GTSAC	2 cut(s)	260, 281
NspI	RCATGY	1 cut(s)	577
NspV	TTCGAA	1 cut(s)	216
OliI	CACNNNNGTG	1 cut(s)	412
PaeI	GCATGC	1 cut(s)	577
PctI	GAATGC	1 cut(s)	113
PdiI	GCCGGC	1 cut(s)	184
PdmI	GAANNNNTTC	2 cut(s)	91, 228
PfeI	GAWTC	2 cut(s)	87, 452
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	6 cut(s)	79, 206, 434, 496, 708, 841
PleI	GAGTC	2 cut(s)	12, 76
PpsI	GAGTC	2 cut(s)	12, 76
Ppu21I	YACGTR	1 cut(s)	694
Psp1406I	AACGTT	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	588, 809
PspPI	GGNCC	1 cut(s)	808
PsyI	GACNNNGTC	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	709
RsaI	GTAC	5 cut(s)	275, 446, 581, 642, 692
RsaNI	GTAC	5 cut(s)	274, 445, 580, 641, 691
RseI	CAYNNNNRTG	1 cut(s)	412
SaqAI	TTAA	3 cut(s)	351, 651, 871
SatI	GCNGC	6 cut(s)	78, 205, 433, 495, 707, 840
Sau3AI	GATC	4 cut(s)	247, 297, 301, 550
Sau96I	GGNCC	1 cut(s)	808
SchI	GAGTC	2 cut(s)	13, 76
ScrFI	CCNGG	2 cut(s)	133, 739
SfaNI	GCATC	2 cut(s)	667, 724
SfuI	TTCGAA	1 cut(s)	216
SinI	GGWCC	1 cut(s)	808
SmiMI	CAYNNNNRTG	1 cut(s)	412
SnaBI	TACGTA	1 cut(s)	694
SphI	GCATGC	1 cut(s)	577
Sse9I	AATT	2 cut(s)	277, 316
SsiI	CCGC	5 cut(s)	75, 111, 129, 205, 440
StyD4I	CCNGG	2 cut(s)	131, 737
StyI	CCWWGG	3 cut(s)	162, 393, 764
TaaI	ACNGT	2 cut(s)	449, 640
TaiI	ACGT	2 cut(s)	385, 696
TaqI	TCGA	3 cut(s)	85, 216, 300
TasI	AATT	2 cut(s)	277, 316
TatI	WGTACW	2 cut(s)	273, 579
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	87, 452
Tru1I	TTAA	3 cut(s)	351, 651, 871
Tru9I	TTAA	3 cut(s)	351, 651, 871
TscAI	CASTG	2 cut(s)	343, 643
TseFI	GTSAC	2 cut(s)	260, 281
TseI	GCWGC	5 cut(s)	77, 432, 494, 706, 839
Tsp45I	GTSAC	2 cut(s)	260, 281
TspDTI	ATGAA	3 cut(s)	531, 630, 863
TspRI	CASTG	2 cut(s)	343, 643
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	808
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	577
XmnI	GAANNNNTTC	2 cut(s)	91, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.