Rmu_ssc0000391.1_g000034

Isopentenyl-diphosphate Delta-isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000391.1
OG0009079
Physical Location & Seq
Forward (+)
111631 .. 115695
4065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000391.1_g000034.1.cds

Sequence Viewer

Length: 1206 bp
atgagcagtggtcttcttaacacagctaccagagccacactctcttcttccttcttccccaaatcccatcttcatcgtctcttctcttcttcttcaaaacctttcccttctctccttccggcgaggtcatctccgtctttacgcatctccaccatggccgacgcccccgatgccggcatggacgccgtccagcgacgcctcatgttcgacgacgaatgtattctagtggatgagaatgatcgtgttgttggtcatgacaccaagtacaattgtcacttgatggaaaagattgaatctgaaaatctgcttcacagagctttcagtgtgtttttgttcaactcaaagaacgagttgcttcttcagcaacgttctgcaacaaaggtaacattcccacttgtgtggacaaacacctgttgtagccatccactataccgtgaatctgagcttatcgatgaggagtgtcttggtgtaagaaatgctgcccaaaggaagcttttggatgaactgggtatccctgctgaagatgtgcctgttgatcagtttattcctttgggtcgcatgttgtacaaggcaccttctgatggcaagtggggagaacatgaacttgattacctgctcttcactgtgcgagatgtgaatgtgcatccgaaccctgatgaagttgcagatatcaaatacgtaaaccaagaggagttgaaggagctgttgaggaaggcggatgccggggaggaaggtctgaagctgtccccttggttcagactagttgtggacaatttcctcttcaagtggtgggatcatgttgagaaacgcaccatcaaggaagctgctgacatgaaaaccatccacagagtcttaatctgctcccagaatacagggaagaaatttagggtttggaaacctcaaagaagagggtgctgcctgtccggcggcacgcccgcgtcgactgtgggttccggcctcttcgacgagtggcgggatgggtggttggcaatcgaagcaggcttggagaaggtggtcagaggccagatcgtggttgcggtataccatggattgtatggtgttggctatctctctgagatggatcgattggtggagagtgcaagggtggtgtcggacttccacgttgccagaagaagccaggcggcaaggcaaggcgagtttactgggtcttggtgtggactcgtcaggatctggatttatgtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
NUDIX

Protein Analysis

401

Amino Acids

45.5

Weight (kDa)

6.47

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 621
AccB1I GGYRCC 1 cut(s) 571
AccB7I CCANNNNNTGG 1 cut(s) 1030
AccI GTMKAC 2 cut(s) 941, 1041
AccII CGCG 1 cut(s) 938
AciI CCGC 6 cut(s) 716, 927, 936, 973, 1037, 1142
AclI AACGTT 1 cut(s) 367
AclWI GGATC 3 cut(s) 801, 1089, 1196
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 3 cut(s) 344, 540, 758
AcyI GRCGYC 3 cut(s) 162, 183, 196
AfaI GTAC 2 cut(s) 266, 566
AfiI CCNNNNNNNGG 3 cut(s) 173, 581, 1030
AgsI TTSAA 5 cut(s) 96, 293, 337, 697, 784
AhlI ACTAGT 1 cut(s) 760
AjnI CCWGG 1 cut(s) 1137
AleI CACNNNNGTG 1 cut(s) 397
AloI GAACNNNNNNTCC 2 cut(s) 495, 527
AluBI AGCT 7 cut(s) 26, 317, 445, 493, 703, 742, 824
AluI AGCT 7 cut(s) 26, 317, 445, 493, 703, 742, 824
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 3 cut(s) 801, 1089, 1196
AlwNI CAGNNNCTG 1 cut(s) 1191
AoxI GGCC 3 cut(s) 156, 955, 1021
ApeKI GCWGC 3 cut(s) 479, 824, 915
ApoI RAATTY 1 cut(s) 881
Asp700I GAANNNNTTC 1 cut(s) 219
AsuC2I CCSGG 1 cut(s) 724
BanI GGYRCC 1 cut(s) 571
BbsI GAAGAC 1 cut(s) 5
BbvI GCAGC 3 cut(s) 466, 811, 902
BccI CCATC 8 cut(s) 75, 274, 429, 575, 821, 848, 971, 1072
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 1139
BciVI GTATCC 1 cut(s) 521
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 83
BcuI ACTAGT 1 cut(s) 760
BfaI CTAG 3 cut(s) 224, 761, 1204
BfuAI ACCTGC 1 cut(s) 621
BfuI GTATCC 1 cut(s) 521
BglI GCCNNNNNGGC 1 cut(s) 924
BisI GCNGC 5 cut(s) 480, 825, 916, 928, 1143
BlsI GCNGC 5 cut(s) 481, 826, 917, 929, 1144
Bme1390I CCNGG 2 cut(s) 724, 1139
BmiI GGNNCC 2 cut(s) 573, 952
BmrFI CCNGG 2 cut(s) 724, 1139
BmrI ACTGGG 2 cut(s) 515, 1173
BmsI GCATC 4 cut(s) 153, 160, 652, 709
BmuI ACTGGG 2 cut(s) 515, 1173
BpiI GAAGAC 1 cut(s) 5
BplI GAGNNNNNCTC 4 cut(s) 24, 56, 115, 147
BpuMI CCSGG 1 cut(s) 724
Bsa29I ATCGAT 2 cut(s) 450, 1084
BsaAI YACGTR 1 cut(s) 679
BsaHI GRCGYC 3 cut(s) 162, 183, 196
BsaJI CCNNGG 4 cut(s) 153, 723, 749, 1045
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 581, 1030
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 510, 1168
BseBI CCWGG 1 cut(s) 1139
BseCI ATCGAT 2 cut(s) 450, 1084
BseDI CCNNGG 4 cut(s) 153, 723, 749, 1045
BseGI GGATG 7 cut(s) 235, 421, 505, 643, 724, 840, 982
BseLI CCNNNNNNNGG 3 cut(s) 173, 581, 1030
BseMII CTCAG 2 cut(s) 432, 1065
BseNI ACTGG 2 cut(s) 510, 1168
BseRI GAGGAG 2 cut(s) 470, 704
BseXI GCAGC 3 cut(s) 466, 811, 902
Bsh1236I CGCG 1 cut(s) 938
BshFI GGCC 3 cut(s) 158, 957, 1023
BshNI GGYRCC 1 cut(s) 571
BshVI ATCGAT 2 cut(s) 450, 1084
BsiSI CCGG 5 cut(s) 119, 174, 723, 924, 954
BslFI GGGAC 1 cut(s) 730
BslI CCNNNNNNNGG 3 cut(s) 173, 581, 1030
BsmAI GTCTC 1 cut(s) 83
BsmBI CGTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 730
BsnI GGCC 3 cut(s) 158, 957, 1023
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 6 cut(s) 238, 535, 793, 1026, 1081, 1188
Bsp19I CCATGG 2 cut(s) 153, 1045
BspACI CCGC 6 cut(s) 716, 927, 936, 973, 1037, 1142
BspANI GGCC 3 cut(s) 158, 957, 1023
BspCNI CTCAG 2 cut(s) 433, 1066
BspDI ATCGAT 2 cut(s) 450, 1084
BspFNI CGCG 1 cut(s) 938
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 573, 952
BspMI ACCTGC 1 cut(s) 621
BspPI GGATC 3 cut(s) 801, 1089, 1196
BspQI GCTCTTC 1 cut(s) 623
BspT107I GGYRCC 1 cut(s) 571
BsrFI RCCGGY 1 cut(s) 173
BsrGI TGTACA 1 cut(s) 564
BsrI ACTGG 2 cut(s) 510, 1168
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 4 cut(s) 153, 723, 749, 1045
BssMI GATC 6 cut(s) 238, 535, 793, 1026, 1081, 1188
BssNAI GTATAC 1 cut(s) 1042
BssNI GRCGYC 3 cut(s) 162, 183, 196
BssT1I CCWWGG 3 cut(s) 153, 749, 1045
Bst1107I GTATAC 1 cut(s) 1042
Bst2UI CCWGG 1 cut(s) 1139
Bst4CI ACNGT 3 cut(s) 434, 625, 946
Bst6I CTCTTC 7 cut(s) 49, 86, 91, 623, 785, 901, 965
BstACI GRCGYC 3 cut(s) 162, 183, 196
BstAUI TGTACA 1 cut(s) 564
BstBAI YACGTR 1 cut(s) 679
BstC8I GCNNGC 4 cut(s) 175, 932, 936, 1000
BstDEI CTNAG 2 cut(s) 441, 1074
BstDSI CCRYGG 2 cut(s) 153, 1045
BstF5I GGATG 7 cut(s) 235, 421, 505, 643, 724, 840, 982
BstFNI CGCG 1 cut(s) 938
BstKTI GATC 6 cut(s) 241, 538, 796, 1029, 1084, 1191
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 6 cut(s) 238, 535, 793, 1026, 1081, 1188
BstMWI GCNNNNNNNGC 5 cut(s) 32, 170, 361, 924, 995
BstNI CCWGG 1 cut(s) 1139
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 2 cut(s) 722, 1137
BstSNI TACGTA 1 cut(s) 679
BstUI CGCG 1 cut(s) 938
BstV1I GCAGC 3 cut(s) 466, 811, 902
BstV2I GAAGAC 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 1188
BstXI CCANNNNNNTGG 1 cut(s) 399
BstYI RGATCY 1 cut(s) 1188
BstZ17I GTATAC 1 cut(s) 1042
Bsu15I ATCGAT 2 cut(s) 450, 1084
BsuI GTATCC 1 cut(s) 521
BsuRI GGCC 3 cut(s) 158, 957, 1023
BsuTUI ATCGAT 2 cut(s) 450, 1084
BtgI CCRYGG 2 cut(s) 153, 1045
BtsCI GGATG 7 cut(s) 235, 421, 505, 643, 724, 840, 982
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 3 cut(s) 13, 328, 621
BveI ACCTGC 1 cut(s) 621
Cac8I GCNNGC 4 cut(s) 175, 932, 936, 1000
CaiI CAGNNNCTG 1 cut(s) 1191
CciI TCATGA 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 173
ClaI ATCGAT 2 cut(s) 450, 1084
CseI GACGC 4 cut(s) 170, 191, 204, 927
Csp6I GTAC 2 cut(s) 265, 565
CviAII CATG 9 cut(s) 154, 178, 202, 254, 559, 599, 797, 832, 1046
CviQI GTAC 2 cut(s) 265, 565
DdeI CTNAG 2 cut(s) 441, 1074
DpnI GATC 6 cut(s) 240, 537, 795, 1028, 1083, 1190
DpnII GATC 6 cut(s) 238, 535, 793, 1026, 1081, 1188
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 7 cut(s) 49, 86, 91, 623, 785, 901, 965
EarI CTCTTC 7 cut(s) 49, 86, 91, 623, 785, 901, 965
EciI GGCGGA 1 cut(s) 731
Eco105I TACGTA 1 cut(s) 679
Eco130I CCWWGG 3 cut(s) 153, 749, 1045
Eco32I GATATC 1 cut(s) 670
Eco57I CTGAAG 3 cut(s) 344, 540, 758
EcoRII CCWGG 1 cut(s) 1137
EcoRV GATATC 1 cut(s) 670
EcoT14I CCWWGG 3 cut(s) 153, 749, 1045
ErhI CCWWGG 3 cut(s) 153, 749, 1045
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 9 cut(s) 157, 181, 205, 257, 562, 602, 800, 835, 1049
FaqI GGGAC 1 cut(s) 730
FatI CATG 9 cut(s) 153, 177, 201, 253, 558, 598, 796, 831, 1045
FauI CCCGC 2 cut(s) 943, 966
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 2 cut(s) 941, 1041
Fnu4HI GCNGC 5 cut(s) 480, 825, 916, 928, 1143
FokI GGATG 7 cut(s) 242, 408, 512, 630, 731, 827, 989
Fsp4HI GCNGC 5 cut(s) 480, 825, 916, 928, 1143
FspBI CTAG 3 cut(s) 224, 761, 1204
GluI GCNGC 5 cut(s) 480, 825, 916, 928, 1143
HaeIII GGCC 3 cut(s) 158, 957, 1023
HapII CCGG 5 cut(s) 119, 174, 723, 924, 954
HgaI GACGC 4 cut(s) 170, 191, 204, 927
Hin1I GRCGYC 3 cut(s) 162, 183, 196
Hin1II CATG 9 cut(s) 157, 181, 205, 257, 562, 602, 800, 835, 1049
HincII GTYRAC 1 cut(s) 942
HindII GTYRAC 1 cut(s) 942
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 4 cut(s) 293, 437, 849, 1179
HpaII CCGG 5 cut(s) 119, 174, 723, 924, 954
Hpy166II GTNNAC 7 cut(s) 402, 682, 769, 942, 1042, 1161, 1178
Hpy188I TCNGA 9 cut(s) 298, 442, 580, 648, 738, 758, 1019, 1075, 1114
Hpy188III TCNNGA 3 cut(s) 254, 1186, 1192
Hpy8I GTNNAC 7 cut(s) 402, 682, 769, 942, 1042, 1161, 1178
Hpy99I CGWCG 6 cut(s) 164, 198, 212, 215, 943, 968
HpyAV CCTTC 8 cut(s) 61, 117, 125, 585, 691, 706, 725, 1003
HpyCH4III ACNGT 3 cut(s) 434, 625, 946
HpyCH4IV ACGT 3 cut(s) 367, 678, 1122
HpyCH4V TGCA 4 cut(s) 374, 643, 665, 1100
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 170, 361, 924, 995
HpyF3I CTNAG 2 cut(s) 441, 1074
HpySE526I ACGT 3 cut(s) 367, 678, 1122
Hsp92I GRCGYC 3 cut(s) 162, 183, 196
Hsp92II CATG 9 cut(s) 157, 181, 205, 257, 562, 602, 800, 835, 1049
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 6 cut(s) 238, 535, 793, 1026, 1081, 1188
LguI GCTCTTC 1 cut(s) 623
LmnI GCTCC 2 cut(s) 700, 866
Lsp1109I GCAGC 3 cut(s) 466, 811, 902
LweI GCATC 4 cut(s) 153, 160, 652, 709
MaeI CTAG 3 cut(s) 224, 761, 1204
MaeII ACGT 3 cut(s) 367, 678, 1122
MaeIII GTNAC 2 cut(s) 272, 382
MalI GATC 6 cut(s) 240, 537, 795, 1028, 1083, 1190
MboI GATC 6 cut(s) 238, 535, 793, 1026, 1081, 1188
MfeI CAATTG 1 cut(s) 268
MflI RGATCY 1 cut(s) 1188
MluCI AATT 3 cut(s) 268, 772, 881
MlyI GAGTC 2 cut(s) 858, 1173
MmeI TCCRAC 1 cut(s) 1092
MroNI GCCGGC 1 cut(s) 173
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 2 cut(s) 18, 854
MslI CAYNNNNRTG 1 cut(s) 397
MspI CCGG 5 cut(s) 119, 174, 723, 924, 954
MspR9I CCNGG 2 cut(s) 724, 1139
MunI CAATTG 1 cut(s) 268
MvaI CCWGG 1 cut(s) 1139
MvnI CGCG 1 cut(s) 938
MwoI GCNNNNNNNGC 5 cut(s) 32, 170, 361, 924, 995
NaeI GCCGGC 1 cut(s) 175
NciI CCSGG 1 cut(s) 724
NcoI CCATGG 2 cut(s) 153, 1045
NdeII GATC 6 cut(s) 238, 535, 793, 1026, 1081, 1188
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 9 cut(s) 157, 181, 205, 257, 562, 602, 800, 835, 1049
NlaIV GGNNCC 2 cut(s) 573, 952
NmuCI GTSAC 1 cut(s) 272
NspI RCATGY 1 cut(s) 562
OliI CACNNNNGTG 1 cut(s) 397
PagI TCATGA 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 623
PcsI WCGNNNNNNNCGW 1 cut(s) 938
PdiI GCCGGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 2 cut(s) 293, 437
PflFI GACNNNGTC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 1030
PkrI GCNGC 5 cut(s) 481, 826, 917, 929, 1144
PleI GAGTC 2 cut(s) 857, 1173
PpsI GAGTC 2 cut(s) 857, 1173
Ppu21I YACGTR 1 cut(s) 679
Psp1406I AACGTT 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 1137
PspGI CCWGG 1 cut(s) 1137
PspN4I GGNNCC 2 cut(s) 573, 952
PstNI CAGNNNCTG 1 cut(s) 1191
PsuI RGATCY 1 cut(s) 1188
PsyI GACNNNGTC 1 cut(s) 185
RsaI GTAC 2 cut(s) 266, 566
RsaNI GTAC 2 cut(s) 265, 565
RseI CAYNNNNRTG 1 cut(s) 397
SalI GTCGAC 1 cut(s) 940
SapI GCTCTTC 1 cut(s) 623
SaqAI TTAA 2 cut(s) 18, 854
SatI GCNGC 5 cut(s) 480, 825, 916, 928, 1143
Sau3AI GATC 6 cut(s) 238, 535, 793, 1026, 1081, 1188
SchI GAGTC 2 cut(s) 858, 1173
ScrFI CCNGG 2 cut(s) 724, 1139
SfaNI GCATC 4 cut(s) 153, 160, 652, 709
SmiMI CAYNNNNRTG 1 cut(s) 397
SnaBI TACGTA 1 cut(s) 679
SpeI ACTAGT 1 cut(s) 760
Sse9I AATT 3 cut(s) 268, 772, 881
SsiI CCGC 6 cut(s) 716, 927, 936, 973, 1037, 1142
SspMI CTAG 3 cut(s) 224, 761, 1204
StyD4I CCNGG 2 cut(s) 722, 1137
StyI CCWWGG 3 cut(s) 153, 749, 1045
TaaI ACNGT 3 cut(s) 434, 625, 946
TaiI ACGT 3 cut(s) 370, 681, 1125
TaqI TCGA 6 cut(s) 207, 450, 941, 963, 993, 1084
TasI AATT 3 cut(s) 268, 772, 881
TatI WGTACW 2 cut(s) 264, 564
TauI GCSGC 2 cut(s) 930, 1145
TfiI GAWTC 2 cut(s) 293, 437
Tru1I TTAA 2 cut(s) 18, 854
Tru9I TTAA 2 cut(s) 18, 854
TscAI CASTG 3 cut(s) 13, 328, 628
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 3 cut(s) 479, 824, 915
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 5 cut(s) 62, 516, 615, 672, 848
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 3 cut(s) 13, 328, 628
Tth111I GACNNNGTC 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 1030
XapI RAATTY 1 cut(s) 881
XceI RCATGY 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 1052
XmiI GTMKAC 2 cut(s) 941, 1041
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 3 cut(s) 224, 761, 1204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.