FvH4_6g00470

Isopentenyl-diphosphate Delta-isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009079
Physical Location & Seq
Forward (+)
303952 .. 307023
3072 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00470.t1

Sequence Viewer

Length: 906 bp
ATGAGCTTCACCGCAACTAGTGGTCTCCTTAACACAGCTACCAGAGCCACACTCTCTTCCCTCTTCTTTCCCAAATCTCATCTTCTTCGTCTTTTCTCTTCTTCTTATTCAACCTTTGCGTCTCGTCGTCCTCTCTCACTAGCAAAGCCTTTCCCTTCTCTCCTTCCGGCGAGGTCATCTCCGTCTTTACGCATCTCCACCATGGCCGACGCCCCCGATGCCGGCATGGACGCCGTCCAGCGACGCCTCATGTTCGAGGACGAATGTATTCTGGTGGATGAGAATGATCGTGTTGTTGGACATGACACAAAGTACAATTGTCACTTGATGGAAAAGATTGAAGCTGAAAATCTGCTTCACAGAGCTTTCAGTGTCTTTCTATTCAACTCCAAGAACGAGTTGCTTCTTCAGCAACGTTCTGCGACAAAGGTAACATTCCCTCTTGTGTGGACAAACACCTGTTGCAGCCATCCACTATACCGTGAATCTGAGCTTATTGATGAGGAGTGCCTTGGAGTAAGAAATGCTGCTCAAAGGAAGCTTTTGGATGAACTTGGTATCCCTGCTGAAGATGTGCCTGTTGATCAGTTTATTCCTTTGGGCCGCATGTTGTACAAGGCACCTTCCGACGGAAAGTGGGGAGAACATGAACTTGATTACCTGCTCTTCACTGTGCGAGATGTGAGCGTGCATCCCAACCCTGATGAAGTTGCGGACATCAAGTACGTAAACCAAGAGGAGTTGAAGGAGCTGCTGAGGAAGGCAGATGCCGGAGAGGAAGGTCTGAAGCTGTCCCCCTGGTTCAGGCTAGTTGTGGACAATTTCCTCTTCAAGTGGTGGGATCATGTAGAGAAACGCACCATCAAGGAAGCTGCGGACATGAAAACCATCCACAGGTTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
NUDIX

Protein Analysis

302

Amino Acids

34.39

Weight (kDa)

5.89

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 119 - 254 5.9e-14 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 669
AccB1I GGYRCC 1 cut(s) 619
AciI CCGC 4 cut(s) 12, 604, 713, 875
AclI AACGTT 1 cut(s) 415
AclWI GGATC 1 cut(s) 849
AcoI YGGCCR 1 cut(s) 204
AcuI CTGAAG 3 cut(s) 392, 588, 806
AcyI GRCGYC 3 cut(s) 210, 231, 244
AfaI GTAC 3 cut(s) 314, 614, 725
AfiI CCNNNNNNNGG 4 cut(s) 221, 629, 804, 894
AgsI TTSAA 5 cut(s) 111, 341, 385, 745, 832
AhlI ACTAGT 1 cut(s) 17
AjnI CCWGG 1 cut(s) 797
AloI GAACNNNNNNTCC 2 cut(s) 543, 575
AluBI AGCT 9 cut(s) 6, 38, 344, 365, 493, 541, 751, 790, 872
AluI AGCT 9 cut(s) 6, 38, 344, 365, 493, 541, 751, 790, 872
Alw26I GTCTC 2 cut(s) 29, 126
AlwI GGATC 1 cut(s) 849
AoxI GGCC 2 cut(s) 204, 601
ApeKI GCWGC 4 cut(s) 465, 527, 751, 872
Asp700I GAANNNNTTC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 601
BanI GGYRCC 1 cut(s) 619
BbvCI CCTCAGC 1 cut(s) 755
BbvI GCAGC 4 cut(s) 477, 514, 738, 859
BccI CCATC 4 cut(s) 322, 477, 869, 896
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 799
BciVI GTATCC 1 cut(s) 569
BclI TGATCA 1 cut(s) 583
BcoDI GTCTC 2 cut(s) 29, 126
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 3 cut(s) 18, 140, 809
BfuAI ACCTGC 1 cut(s) 669
BfuI GTATCC 1 cut(s) 569
BisI GCNGC 5 cut(s) 466, 528, 604, 752, 873
BlsI GCNGC 5 cut(s) 467, 529, 605, 753, 874
Bme1390I CCNGG 1 cut(s) 799
BmgT120I GGNCC 1 cut(s) 601
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 1 cut(s) 799
BmsI GCATC 4 cut(s) 201, 208, 700, 757
BplI GAGNNNNNCTC 4 cut(s) 36, 68, 163, 195
Bpu10I CCTNAGC 1 cut(s) 755
BsaAI YACGTR 1 cut(s) 727
BsaHI GRCGYC 3 cut(s) 210, 231, 244
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 201, 511, 797
Bsc4I CCNNNNNNNGG 4 cut(s) 221, 629, 804, 894
Bse118I RCCGGY 1 cut(s) 221
BseBI CCWGG 1 cut(s) 799
BseDI CCNNGG 3 cut(s) 201, 511, 797
BseGI GGATG 5 cut(s) 283, 469, 553, 691, 888
BseLI CCNNNNNNNGG 4 cut(s) 221, 629, 804, 894
BseMII CTCAG 2 cut(s) 480, 746
BseRI GAGGAG 2 cut(s) 518, 752
BseXI GCAGC 4 cut(s) 477, 514, 738, 859
BshFI GGCC 2 cut(s) 206, 603
BshNI GGYRCC 1 cut(s) 619
BsiSI CCGG 3 cut(s) 167, 222, 771
BslFI GGGAC 1 cut(s) 778
BslI CCNNNNNNNGG 4 cut(s) 221, 629, 804, 894
BsmAI GTCTC 2 cut(s) 29, 126
BsmBI CGTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 778
BsnI GGCC 2 cut(s) 206, 603
Bso31I GGTCTC 1 cut(s) 29
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 3 cut(s) 286, 583, 841
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 4 cut(s) 12, 604, 713, 875
BspANI GGCC 2 cut(s) 206, 603
BspCNI CTCAG 2 cut(s) 481, 747
BspLI GGNNCC 1 cut(s) 621
BspMI ACCTGC 1 cut(s) 669
BspPI GGATC 1 cut(s) 849
BspQI GCTCTTC 1 cut(s) 671
BspT107I GGYRCC 1 cut(s) 619
BspTNI GGTCTC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 221
BsrGI TGTACA 1 cut(s) 612
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 3 cut(s) 201, 511, 797
BssMI GATC 3 cut(s) 286, 583, 841
BssNI GRCGYC 3 cut(s) 210, 231, 244
BssT1I CCWWGG 2 cut(s) 201, 511
Bst2UI CCWGG 1 cut(s) 799
Bst4CI ACNGT 2 cut(s) 482, 673
Bst6I CTCTTC 5 cut(s) 61, 68, 103, 671, 833
BstACI GRCGYC 3 cut(s) 210, 231, 244
BstAUI TGTACA 1 cut(s) 612
BstBAI YACGTR 1 cut(s) 727
BstC8I GCNNGC 2 cut(s) 223, 689
BstDEI CTNAG 2 cut(s) 489, 755
BstDSI CCRYGG 1 cut(s) 201
BstENI CCTNNNNNAGG 1 cut(s) 802
BstF5I GGATG 5 cut(s) 283, 469, 553, 691, 888
BstKTI GATC 3 cut(s) 289, 586, 844
BstMAI GTCTC 2 cut(s) 29, 126
BstMBI GATC 3 cut(s) 286, 583, 841
BstMWI GCNNNNNNNGC 3 cut(s) 44, 218, 409
BstNI CCWGG 1 cut(s) 799
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 1 cut(s) 797
BstSNI TACGTA 1 cut(s) 727
BstV1I GCAGC 4 cut(s) 477, 514, 738, 859
BsuI GTATCC 1 cut(s) 569
BsuRI GGCC 2 cut(s) 206, 603
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 5 cut(s) 283, 469, 553, 691, 888
BtsIMutI CAGTG 2 cut(s) 376, 669
BveI ACCTGC 1 cut(s) 669
Cac8I GCNNGC 2 cut(s) 223, 689
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 601
CseI GACGC 4 cut(s) 108, 218, 239, 252
Csp6I GTAC 3 cut(s) 313, 613, 724
CviAII CATG 8 cut(s) 202, 226, 250, 302, 607, 647, 845, 880
CviQI GTAC 3 cut(s) 313, 613, 724
DdeI CTNAG 2 cut(s) 489, 755
DpnI GATC 3 cut(s) 288, 585, 843
DpnII GATC 3 cut(s) 286, 583, 841
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 5 cut(s) 61, 68, 103, 671, 833
EarI CTCTTC 5 cut(s) 61, 68, 103, 671, 833
Eco105I TACGTA 1 cut(s) 727
Eco130I CCWWGG 2 cut(s) 201, 511
Eco31I GGTCTC 1 cut(s) 29
Eco57I CTGAAG 3 cut(s) 392, 588, 806
EcoNI CCTNNNNNAGG 1 cut(s) 802
EcoRII CCWGG 1 cut(s) 797
EcoT14I CCWWGG 2 cut(s) 201, 511
ErhI CCWWGG 2 cut(s) 201, 511
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 8 cut(s) 205, 229, 253, 305, 610, 650, 848, 883
FaiI YATR 9 cut(s) 203, 227, 251, 303, 478, 608, 648, 846, 881
FaqI GGGAC 1 cut(s) 778
FatI CATG 8 cut(s) 201, 225, 249, 301, 606, 646, 844, 879
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 5 cut(s) 466, 528, 604, 752, 873
FokI GGATG 5 cut(s) 290, 456, 560, 678, 875
Fsp4HI GCNGC 5 cut(s) 466, 528, 604, 752, 873
FspBI CTAG 3 cut(s) 18, 140, 809
GluI GCNGC 5 cut(s) 466, 528, 604, 752, 873
HaeIII GGCC 2 cut(s) 206, 603
HapII CCGG 3 cut(s) 167, 222, 771
HgaI GACGC 4 cut(s) 108, 218, 239, 252
Hin1I GRCGYC 3 cut(s) 210, 231, 244
Hin1II CATG 8 cut(s) 205, 229, 253, 305, 610, 650, 848, 883
HincII GTYRAC 1 cut(s) 900
HindII GTYRAC 1 cut(s) 900
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 1 cut(s) 485
HpaII CCGG 3 cut(s) 167, 222, 771
Hpy166II GTNNAC 4 cut(s) 450, 730, 817, 900
Hpy188I TCNGA 3 cut(s) 490, 628, 786
Hpy8I GTNNAC 4 cut(s) 450, 730, 817, 900
Hpy99I CGWCG 4 cut(s) 129, 212, 246, 632
HpyAV CCTTC 6 cut(s) 165, 173, 633, 739, 754, 773
HpyCH4III ACNGT 2 cut(s) 482, 673
HpyCH4IV ACGT 2 cut(s) 415, 726
HpyCH4V TGCA 2 cut(s) 465, 691
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 218, 409
HpyF3I CTNAG 2 cut(s) 489, 755
HpySE526I ACGT 2 cut(s) 415, 726
Hsp92I GRCGYC 3 cut(s) 210, 231, 244
Hsp92II CATG 8 cut(s) 205, 229, 253, 305, 610, 650, 848, 883
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 3 cut(s) 286, 583, 841
LguI GCTCTTC 1 cut(s) 671
LmnI GCTCC 1 cut(s) 748
Lsp1109I GCAGC 4 cut(s) 477, 514, 738, 859
LweI GCATC 4 cut(s) 201, 208, 700, 757
MaeI CTAG 3 cut(s) 18, 140, 809
MaeII ACGT 2 cut(s) 415, 726
MaeIII GTNAC 2 cut(s) 320, 430
MalI GATC 3 cut(s) 288, 585, 843
MboI GATC 3 cut(s) 286, 583, 841
MfeI CAATTG 1 cut(s) 316
MluCI AATT 2 cut(s) 316, 820
MmeI TCCRAC 2 cut(s) 277, 651
MroNI GCCGGC 1 cut(s) 221
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 1 cut(s) 30
MspI CCGG 3 cut(s) 167, 222, 771
MspR9I CCNGG 1 cut(s) 799
MunI CAATTG 1 cut(s) 316
MvaI CCWGG 1 cut(s) 799
MwoI GCNNNNNNNGC 3 cut(s) 44, 218, 409
NaeI GCCGGC 1 cut(s) 223
NcoI CCATGG 1 cut(s) 201
NdeII GATC 3 cut(s) 286, 583, 841
NgoMIV GCCGGC 1 cut(s) 221
NlaIII CATG 8 cut(s) 205, 229, 253, 305, 610, 650, 848, 883
NlaIV GGNNCC 1 cut(s) 621
NmuCI GTSAC 1 cut(s) 320
NspI RCATGY 1 cut(s) 610
PciSI GCTCTTC 1 cut(s) 671
PdiI GCCGGC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 485
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 5 cut(s) 467, 529, 605, 753, 874
Ppu21I YACGTR 1 cut(s) 727
Psp1406I AACGTT 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 797
PspGI CCWGG 1 cut(s) 797
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 1 cut(s) 601
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 3 cut(s) 314, 614, 725
RsaNI GTAC 3 cut(s) 313, 613, 724
SapI GCTCTTC 1 cut(s) 671
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 5 cut(s) 466, 528, 604, 752, 873
Sau3AI GATC 3 cut(s) 286, 583, 841
Sau96I GGNCC 1 cut(s) 601
ScrFI CCNGG 1 cut(s) 799
SfaNI GCATC 4 cut(s) 201, 208, 700, 757
SnaBI TACGTA 1 cut(s) 727
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 2 cut(s) 316, 820
SsiI CCGC 4 cut(s) 12, 604, 713, 875
SspMI CTAG 3 cut(s) 18, 140, 809
StyD4I CCNGG 1 cut(s) 797
StyI CCWWGG 2 cut(s) 201, 511
TaaI ACNGT 2 cut(s) 482, 673
TaiI ACGT 2 cut(s) 418, 729
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 316, 820
TatI WGTACW 2 cut(s) 312, 612
TauI GCSGC 1 cut(s) 606
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 2 cut(s) 376, 676
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 4 cut(s) 465, 527, 751, 872
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 4 cut(s) 564, 663, 720, 896
TspGWI ACGGA 2 cut(s) 171, 645
TspRI CASTG 2 cut(s) 376, 676
Tth111I GACNNNGTC 1 cut(s) 233
XagI CCTNNNNNAGG 1 cut(s) 802
XceI RCATGY 1 cut(s) 610
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 3 cut(s) 18, 140, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.