Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009079

Physical Location & Seq

Genomic Coordinates Forward (+)

5371627 .. 5373809

Gene Structure 2183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCTACTGCTTCACTATTTAGCTTCCCTTCATTTCATCTCAGATCCCTCCTTCCTTCTCTCTCTTCTTCTTCTTCTTCTTCCTCTTCCCGATTTGCCCCTCCCCGTCTTTCTCCGATCCGATCTCCGGCGCCGAGGACTCAGCTGTCTGTTCGCGCTTTCTCAGCCGTCACCATGACCGATTCTAACGATGCTGGAATGGATGCTGTTCAGAGACGACTCATGTTTGAAGACGAATGCATTCTCGTTGATGAAAATGATCGTGTGGTGGGACATGACACTAAGTATAACTGTCATCTGATGGAAAAGATTGAAGCTGAGAATTTACTTCACAGAGCTTTCAGTGTGTTTTTATTCAACTCCAAGTATGAGTTGCTTCTCCAGCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTGTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCCGAGCTTATTGAAGAGAATGTGCTTGGTGTAAGAAATGCCGCACAAAGGAAGCTTTTCGATGAGCTCGGTATTGTAGCAGAAGATGTACCAGTCGATGAGTTCACTCCCTTGGGACGCATGCTTTACAAGGCACCTTCTGATGGGAAATGGGGAGAGCACGAAGTTGACTATCTACTCTTCATCGTGCGGGATGTGAAGCTTCAACCAAACCCAGATGAAGTGGCTGAGATCAAGTACGTGAGCAGGGAAGAGCTTAAGGAGCTGGTGAAGAAAGCAGATGCTGGCGATGAAGCTGTGAAACTATCTCCATGGTTCAGATTGGTGGTGGATAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAACTATCACTGAAGCTGCAGACATGAAAACCATTCACAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004452 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009507 GO:0009536 GO:0009791 GO:0009908 GO:0009987 GO:0016853 GO:0016860 GO:0016863 GO:0019637 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046490 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090407 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

NUDIX

Protein Analysis

291

Amino Acids

33.21

Weight (kDa)

5.69

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	110 - 249	3.1e-17	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02780 AT3G02780 AT5G16440
fragaria_vesca	FvH4_6g00470
malus_domestica	MD04G1245100.v1.1 MD12G1086800.v1.1
prunus_persica	Prupe.6G361700_v2.0.a1 Prupe.6G361700_v2.0.a1 Prupe.6G361700_v2.0.a1
pyrus_communis	pycom04g21580 pycom12g23880
rosa_chinensis	RchiOBHm_Chr3g0447851
rosa_laevigata	RLG00000025966
rosa_multiflora	Rmu_co8057268.1_g000001 Rmu_ssc0000391.1_g000034
rosa_roxburghii	Rroxscaffold_6G00426050
rosa_rugosa	Rorug02G0606500
rosa_samantha	Rh3AG005700 Rh3BG005400 Rh3CG005600 Rh3DG005900
rosa_wichuraiana	Rw3G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	145
AccB1I	GGYRCC	2 cut(s)	130, 592
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	156
AciI	CCGC	2 cut(s)	501, 649
AclWI	GGATC	3 cut(s)	39, 112, 822
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	861
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	2 cut(s)	549, 698
AfiI	CCNNNNNNNGG	3 cut(s)	127, 507, 602
AflII	CTTAAG	1 cut(s)	716
AgsI	TTSAA	5 cut(s)	230, 314, 358, 473, 665
AleI	CACNNNNGTG	1 cut(s)	418
Alw21I	GWGCWC	2 cut(s)	528, 621
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	3 cut(s)	39, 112, 822
AlwNI	CAGNNNCTG	1 cut(s)	743
ApeKI	GCWGC	2 cut(s)	438, 845
ApoI	RAATTY	1 cut(s)	322
Asp700I	GAANNNNTTC	2 cut(s)	240, 515
AspLEI	GCGC	2 cut(s)	133, 158
AsuHPI	GGTGA	2 cut(s)	163, 739
BanI	GGYRCC	2 cut(s)	130, 592
BanII	GRGCYC	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	2 cut(s)	528, 621
BbvI	GCAGC	2 cut(s)	450, 832
BccI	CCATC	3 cut(s)	295, 450, 596
BceAI	ACGGC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	208
BfmI	CTRYAG	1 cut(s)	846
BfoI	RGCGCY	1 cut(s)	134
BfrI	CTTAAG	1 cut(s)	716
BisI	GCNGC	3 cut(s)	439, 501, 846
BlsI	GCNGC	3 cut(s)	440, 502, 847
BmiI	GGNNCC	2 cut(s)	132, 594
BmsI	GCATC	3 cut(s)	181, 193, 730
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	700
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	3 cut(s)	134, 570, 770
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 507, 602
Bse1I	ACTGG	1 cut(s)	551
BseDI	CCNNGG	3 cut(s)	134, 570, 770
BseGI	GGATG	3 cut(s)	208, 442, 658
BseLI	CCNNNNNNNGG	3 cut(s)	127, 507, 602
BseMII	CTCAG	5 cut(s)	55, 155, 177, 309, 678
BseNI	ACTGG	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	450, 832
Bsh1236I	CGCG	1 cut(s)	156
BshNI	GGYRCC	2 cut(s)	130, 592
BsiHKAI	GWGCWC	2 cut(s)	528, 621
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	2 cut(s)	285, 588
BslI	CCNNNNNNNGG	3 cut(s)	127, 507, 602
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	2 cut(s)	285, 588
BsmI	GAATGC	2 cut(s)	240, 242
Bsp1286I	GDGCHC	2 cut(s)	528, 621
Bsp143I	GATC	6 cut(s)	44, 117, 122, 259, 690, 814
Bsp19I	CCATGG	1 cut(s)	770
BspACI	CCGC	2 cut(s)	501, 649
BspCNI	CTCAG	5 cut(s)	54, 154, 176, 310, 679
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	132, 594
BspMAI	CTGCAG	1 cut(s)	850
BspPI	GGATC	3 cut(s)	39, 112, 822
BspQI	GCTCTTC	1 cut(s)	705
BspT107I	GGYRCC	2 cut(s)	130, 592
BspTI	CTTAAG	1 cut(s)	716
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	3 cut(s)	134, 570, 770
BssMI	GATC	6 cut(s)	44, 117, 122, 259, 690, 814
BssNI	GRCGYC	1 cut(s)	131
BssT1I	CCWWGG	2 cut(s)	570, 770
Bst4CI	ACNGT	3 cut(s)	293, 390, 455
Bst6I	CTCTTC	5 cut(s)	70, 91, 468, 644, 705
BstACI	GRCGYC	1 cut(s)	131
BstAFI	CTTAAG	1 cut(s)	716
BstBAI	YACGTR	1 cut(s)	700
BstC8I	GCNNGC	2 cut(s)	581, 745
BstDEI	CTNAG	6 cut(s)	41, 141, 163, 282, 318, 687
BstDSI	CCRYGG	1 cut(s)	770
BstF5I	GGATG	3 cut(s)	208, 442, 658
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	2 cut(s)	133, 158
BstKTI	GATC	6 cut(s)	47, 120, 125, 262, 693, 817
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	6 cut(s)	44, 117, 122, 259, 690, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 382, 721
BstNSI	RCATGY	1 cut(s)	583
BstSFI	CTRYAG	1 cut(s)	846
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	450, 832
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	44
BstXI	CCANNNNNNTGG	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	770
BtgZI	GCGATG	1 cut(s)	762
BtsCI	GGATG	3 cut(s)	208, 442, 658
BtsIMutI	CAGTG	2 cut(s)	349, 837
Cac8I	GCNNGC	2 cut(s)	581, 745
CaiI	CAGNNNCTG	1 cut(s)	743
CfoI	GCGC	2 cut(s)	133, 158
CseI	GACGC	1 cut(s)	585
Csp6I	GTAC	2 cut(s)	548, 697
CviAII	CATG	7 cut(s)	175, 223, 275, 580, 771, 818, 853
CviQI	GTAC	2 cut(s)	548, 697
DdeI	CTNAG	6 cut(s)	41, 141, 163, 282, 318, 687
DinI	GGCGCC	1 cut(s)	132
DpnI	GATC	6 cut(s)	46, 119, 124, 261, 692, 816
DpnII	GATC	6 cut(s)	44, 117, 122, 259, 690, 814
DrdI	GACNNNNNNGTC	1 cut(s)	145
DseDI	GACNNNNNNGTC	1 cut(s)	145
Eam1104I	CTCTTC	5 cut(s)	70, 91, 468, 644, 705
EarI	CTCTTC	5 cut(s)	70, 91, 468, 644, 705
Ecl136II	GAGCTC	1 cut(s)	526
Eco130I	CCWWGG	2 cut(s)	570, 770
Eco24I	GRGCYC	1 cut(s)	528
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	861
EcoICRI	GAGCTC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	570, 770
EcoT22I	ATGCAT	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	528
EgeI	GGCGCC	1 cut(s)	132
EheI	GGCGCC	1 cut(s)	132
ErhI	CCWWGG	2 cut(s)	570, 770
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	7 cut(s)	178, 226, 278, 583, 774, 821, 856
FaiI	YATR	9 cut(s)	176, 224, 276, 288, 369, 581, 772, 819, 854
FaqI	GGGAC	2 cut(s)	285, 588
FatI	CATG	7 cut(s)	174, 222, 274, 579, 770, 817, 852
FauI	CCCGC	1 cut(s)	642
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	439, 501, 846
FokI	GGATG	3 cut(s)	215, 429, 665
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	3 cut(s)	439, 501, 846
GlaI	GCGC	2 cut(s)	132, 157
GluI	GCNGC	3 cut(s)	439, 501, 846
GsuI	CTGGAG	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	134
HapII	CCGG	1 cut(s)	128
HgaI	GACGC	1 cut(s)	585
HhaI	GCGC	2 cut(s)	133, 158
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	7 cut(s)	178, 226, 278, 583, 774, 821, 856
Hin6I	GCGC	2 cut(s)	131, 156
HinP1I	GCGC	2 cut(s)	131, 156
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	2 cut(s)	512, 659
HinfI	GANTC	4 cut(s)	139, 182, 219, 458
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	163, 739
Hpy166II	GTNNAC	4 cut(s)	6, 423, 564, 628
Hpy188I	TCNGA	9 cut(s)	44, 117, 122, 213, 300, 463, 601, 779, 875
Hpy188III	TCNNGA	2 cut(s)	90, 799
Hpy8I	GTNNAC	4 cut(s)	6, 423, 564, 628
HpyAV	CCTTC	4 cut(s)	39, 62, 66, 606
HpyCH4III	ACNGT	3 cut(s)	293, 390, 455
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	3 cut(s)	240, 438, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 382, 721
HpyF3I	CTNAG	6 cut(s)	41, 141, 163, 282, 318, 687
HpySE526I	ACGT	1 cut(s)	699
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	7 cut(s)	178, 226, 278, 583, 774, 821, 856
HspAI	GCGC	2 cut(s)	131, 156
KasI	GGCGCC	1 cut(s)	130
Kzo9I	GATC	6 cut(s)	44, 117, 122, 259, 690, 814
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	1 cut(s)	721
LpnPI	CCDG	8 cut(s)	141, 180, 395, 564, 687, 691, 710, 729
Lsp1109I	GCAGC	2 cut(s)	450, 832
LweI	GCATC	3 cut(s)	181, 193, 730
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	2 cut(s)	169, 403
MalI	GATC	6 cut(s)	46, 119, 124, 261, 692, 816
MboI	GATC	6 cut(s)	44, 117, 122, 259, 690, 814
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	528, 621
MluCI	AATT	2 cut(s)	322, 793
Mly113I	GGCGCC	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	133, 213
MnlI	CCTC	5 cut(s)	59, 94, 111, 129, 456
Mph1103I	ATGCAT	1 cut(s)	242
MroXI	GAANNNNTTC	2 cut(s)	240, 515
MseI	TTAA	1 cut(s)	717
MslI	CAYNNNNRTG	1 cut(s)	418
MspA1I	CMGCKG	1 cut(s)	145
MspCI	CTTAAG	1 cut(s)	716
MspI	CCGG	1 cut(s)	128
Mva1269I	GAATGC	2 cut(s)	240, 242
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	164, 382, 721
NarI	GGCGCC	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	770
NdeII	GATC	6 cut(s)	44, 117, 122, 259, 690, 814
NlaIII	CATG	7 cut(s)	178, 226, 278, 583, 774, 821, 856
NlaIV	GGNNCC	2 cut(s)	132, 594
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	169
NsiI	ATGCAT	1 cut(s)	242
NspI	RCATGY	1 cut(s)	583
OliI	CACNNNNGTG	1 cut(s)	418
PaeI	GCATGC	1 cut(s)	583
PciSI	GCTCTTC	1 cut(s)	705
PctI	GAATGC	2 cut(s)	240, 242
PdmI	GAANNNNTTC	2 cut(s)	240, 515
PfeI	GAWTC	2 cut(s)	182, 458
PkrI	GCNGC	3 cut(s)	440, 502, 847
PleI	GAGTC	2 cut(s)	133, 213
PluTI	GGCGCC	1 cut(s)	134
PpsI	GAGTC	2 cut(s)	133, 213
Ppu21I	YACGTR	1 cut(s)	700
Psp124BI	GAGCTC	1 cut(s)	528
PspN4I	GGNNCC	2 cut(s)	132, 594
PstI	CTGCAG	1 cut(s)	850
PstNI	CAGNNNCTG	1 cut(s)	743
PsuI	RGATCY	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	2 cut(s)	549, 698
RsaNI	GTAC	2 cut(s)	548, 697
RseI	CAYNNNNRTG	1 cut(s)	418
SacI	GAGCTC	1 cut(s)	528
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	1 cut(s)	717
SatI	GCNGC	3 cut(s)	439, 501, 846
Sau3AI	GATC	6 cut(s)	44, 117, 122, 259, 690, 814
SchI	GAGTC	2 cut(s)	133, 213
SduI	GDGCHC	2 cut(s)	528, 621
SfaNI	GCATC	3 cut(s)	181, 193, 730
SfcI	CTRYAG	1 cut(s)	846
SfoI	GGCGCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	418
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
SphI	GCATGC	1 cut(s)	583
Sse9I	AATT	2 cut(s)	322, 793
SsiI	CCGC	2 cut(s)	501, 649
SspDI	GGCGCC	1 cut(s)	130
SstI	GAGCTC	1 cut(s)	528
StyI	CCWWGG	2 cut(s)	570, 770
TaaI	ACNGT	3 cut(s)	293, 390, 455
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	2 cut(s)	519, 555
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	2 cut(s)	322, 793
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	2 cut(s)	182, 458
Tru1I	TTAA	1 cut(s)	717
Tru9I	TTAA	1 cut(s)	717
TscAI	CASTG	2 cut(s)	349, 844
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	438, 845
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	8 cut(s)	21, 26, 267, 631, 693, 765, 818, 869
TspRI	CASTG	2 cut(s)	349, 844
Vha464I	CTTAAG	1 cut(s)	716
XapI	RAATTY	1 cut(s)	322
XceI	RCATGY	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	2 cut(s)	240, 515
Zsp2I	ATGCAT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.