Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009079

Physical Location & Seq

Genomic Coordinates Reverse (-)

24325677 .. 24327851

Gene Structure 2175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g23880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGCCTCTCCACTACTCGCCTTCTCCAGACTCTCTCCTTCCTTCCCAAATCTCATCCTCCTCTCTTCTCATCCCCTGCCACTCCAATCTATCTCTTCTCCAAGCCCTCCGCCTTCCCCTCCCTCTCCGCCCGGCTATCTCTGTCTTTTCACATTTCCACCATGGGCGACGCTCCTGACGCTGGCATGGACGCCGTCCAGCGCCGCCTCATGTTCGAAGACGAATGTATTCTGGTGGATGAGAATGATCGTGTTGTTGGTCACGACACCAAGTACAATTGTCACTTGATGGAAAAGATCGAATCTGAAAGCATTTGCTTCACAGAGCTTTCAGTGTTTTTTTGTTTAACTCAAAGCATGAGTTGCTTCTTCAGCAACGTTCTGCAACCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

NUDIX

Protein Analysis

132

Amino Acids

14.73

Weight (kDa)

5.44

Isoelectric Point (pI)

64.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02780 AT3G02780 AT5G16440
fragaria_vesca	FvH4_6g00470
malus_domestica	MD04G1245100.v1.1 MD12G1086800.v1.1
prunus_persica	Prupe.6G361700_v2.0.a1 Prupe.6G361700_v2.0.a1 Prupe.6G361700_v2.0.a1
pyrus_communis	pycom04g21580 pycom12g23880
rosa_chinensis	RchiOBHm_Chr3g0447851
rosa_laevigata	RLG00000025966
rosa_multiflora	Rmu_co8057268.1_g000001 Rmu_ssc0000391.1_g000034
rosa_roxburghii	Rroxscaffold_6G00426050
rosa_rugosa	Rorug02G0606500
rosa_samantha	Rh3AG005700 Rh3BG005400 Rh3CG005600 Rh3DG005900
rosa_wichuraiana	Rw3G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	111, 129, 205
AclI	AACGTT	1 cut(s)	378
AcuI	CTGAAG	1 cut(s)	355
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	182
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	133
AsuII	TTCGAA	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	225
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	133
BfoI	RGCGCY	1 cut(s)	205
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	11
Bpu14I	TTCGAA	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	162, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	162, 389
BseGI	GGATG	3 cut(s)	55, 71, 244
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	247, 297
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	3 cut(s)	111, 129, 205
BspT104I	TTCGAA	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	162, 389
BssMI	GATC	2 cut(s)	247, 297
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	2 cut(s)	162, 389
Bst6I	CTCTTC	2 cut(s)	71, 101
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	363
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	184
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	3 cut(s)	55, 71, 244
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	2 cut(s)	250, 300
BstMBI	GATC	2 cut(s)	247, 297
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 363, 372
BstSCI	CCNGG	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	3 cut(s)	55, 71, 244
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	184
CfoI	GCGC	1 cut(s)	204
CseI	GACGC	3 cut(s)	179, 188, 200
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	4 cut(s)	163, 187, 211, 358
CviJI	RGCY	4 cut(s)	6, 106, 136, 328
CviKI_1	RGCY	4 cut(s)	6, 106, 136, 328
CviQI	GTAC	1 cut(s)	274
DpnI	GATC	2 cut(s)	249, 299
DpnII	GATC	2 cut(s)	247, 297
Eam1104I	CTCTTC	2 cut(s)	71, 101
EarI	CTCTTC	2 cut(s)	71, 101
EciI	GGCGGA	2 cut(s)	100, 118
Eco130I	CCWWGG	2 cut(s)	162, 389
Eco57I	CTGAAG	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	162, 389
ErhI	CCWWGG	2 cut(s)	162, 389
FaeI	CATG	4 cut(s)	166, 190, 214, 361
FaiI	YATR	4 cut(s)	164, 188, 212, 359
FatI	CATG	4 cut(s)	162, 186, 210, 357
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	3 cut(s)	42, 58, 251
Fsp4HI	GCNGC	1 cut(s)	205
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	205
GsuI	CTGGAG	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	205
HapII	CCGG	1 cut(s)	133
HgaI	GACGC	3 cut(s)	179, 188, 200
HhaI	GCGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	166, 190, 214, 361
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	31, 302
HpaII	CCGG	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	3 cut(s)	28, 176, 263
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	4 cut(s)	32, 49, 53, 124
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 363, 372
HpySE526I	ACGT	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	166, 190, 214, 361
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	247, 297
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	7 cut(s)	41, 90, 146, 168, 189, 212, 218
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	260, 281
MalI	GATC	2 cut(s)	249, 299
MboI	GATC	2 cut(s)	247, 297
MboII	GAAGA	4 cut(s)	58, 88, 230, 361
MfeI	CAATTG	1 cut(s)	277
MluCI	AATT	1 cut(s)	277
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	7 cut(s)	17, 69, 72, 118, 130, 134, 218
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	1 cut(s)	347
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	133
MunI	CAATTG	1 cut(s)	277
MwoI	GCNNNNNNNGC	3 cut(s)	179, 363, 372
NciI	CCSGG	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	2 cut(s)	247, 297
NlaIII	CATG	4 cut(s)	166, 190, 214, 361
NmuCI	GTSAC	2 cut(s)	260, 281
NspV	TTCGAA	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	302
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp1406I	AACGTT	1 cut(s)	378
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	2 cut(s)	247, 297
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	133
SetI	ASST	3 cut(s)	330, 381, 395
SfuI	TTCGAA	1 cut(s)	216
Sse9I	AATT	1 cut(s)	277
SsiI	CCGC	3 cut(s)	111, 129, 205
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	2 cut(s)	162, 389
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	2 cut(s)	216, 300
TasI	AATT	1 cut(s)	277
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	2 cut(s)	260, 281
Tsp45I	GTSAC	2 cut(s)	260, 281
TspRI	CASTG	1 cut(s)	339
Tth111I	GACNNNGTC	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.