AT3G02990

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008306
Physical Location & Seq
Forward (+)
673428 .. 676428
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02990.1

Sequence Viewer

Length: 1407 bp
ATGGGAACGGTTTGCGAATCTGTAGCGACGGCGAAATCTTCGACGGCGGTGATGAGCTCCATTCCGCCTTTTCTGAGCAAAACGTACGATATGGTTGACGATCCATTGACGGACGACGTGGTGTCTTGGAGCAGCGGAAACAACAGCTTCGTGGTTTGGAACGTGCCTGAGTTCGCCAAACAGTTTCTACCAAAGTATTTCAAGCACAACAATTTCTCCAGCTTCGTCAGACAGCTCAATACTTATGGTTTTAGAAAAGTTGATCCAGACCGCTGGGAGTTTGCAAACGAGGGCTTTTTAAGAGGCCAAAAGCAAATACTAAAGAGTATTGTCCGGCGAAAACCTGCACAAGTGCAGCCTCCACAACAACCTCAAGTTCAGCACTCATCTGTGGGTGCGTGCGTTGAAGTGGGCAAATTTGGACTCGAAGAGGAAGTGGAAAGACTTCAGCGCGATAAGAACGTCCTTATGCAGGAACTTGTAAGGTTGAGGCAGCAACAACAAGTTACCGAACATCATCTGCAGAATGTGGGGCAGAAAGTTCATGTGATGGAGCAGAGGCAGCAACAGATGATGTCCTTTCTAGCAAAGGCTGTCCAAAGTCCAGGTTTCTTAAACCAATTTTCTCAGCAGAGTAATGAAGCAAACCAACACATTTCTGAAAGCAACAAAAAGAGGAGGCTACCTGTTGAGGACCAGATGAATTCTGGCAGTCATGGGGTTAATGGTCTTAGCCGCCAGATTGTGAGATATCAGTCATCGATGAACGATGCAACAAACACTATGCTTCAACAGATACAGCAGATGAGTAATGCACCTAGCCATGAATCTCTCTCAAGCAATAATGGTAGCTTTCTTTTGGGCGATGTTCCAAATTCTAACATTTCAGACAATGGGAGCTCCTCAAATGGATCACCTGAAGTTACATTGGCAGATGTTTCATCCATTCCTGCAGGCTTCTATCCTGCAATGAAGTACCACGAGCCTTGTGAAACAAATCAAGTCATGGAGACCAATTTGCCTTTTTCTCAAGGTGATCTCTTACCTCCAACGCAAGGAGCAGCAGCTTCTGGGAGCTCAAGTTCGGATCTTGTTGGATGCGAGACAGATAATGGAGAGTGTTTGGATCCAATAATGGCTGTTTTGGATGGCGCACTCGAACTAGAAGCTGATACCTTAAATGAGTTGCTTCCTGAAGTCCAAGATTCTTTTTGGGAACAGTTCATTGGTGAGAGCCCAGTGATTGGTGAGACAGATGAGTTAATCTCAGGATCAGTGGAAAATGAACTGATATTGGAGCAACTAGAGTTACAATCAACCCTGAGTAATGTGTGGAGCAAGAATCAACAAATGAACCATCTTACTGAACAGATGGGACTTCTCACATCAGATGCTCTCAGAAAATGA

Protein Analysis

468

Amino Acids

51.96

Weight (kDa)

4.82

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 24 - 113 7.5e-29 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 352
AccB7I CCANNNNNTGG 1 cut(s) 1244
AccII CGCG 1 cut(s) 453
AciI CCGC 5 cut(s) 47, 65, 135, 271, 736
AclWI GGATC 7 cut(s) 95, 257, 919, 1095, 1121, 1134, 1279
AcsI RAATTY 3 cut(s) 416, 703, 874
AcuI CTGAAG 3 cut(s) 431, 939, 1215
AfaI GTAC 2 cut(s) 86, 977
AfiI CCNNNNNNNGG 3 cut(s) 472, 1055, 1244
AgsI TTSAA 3 cut(s) 202, 407, 791
AhdI GACNNNNNGTC 1 cut(s) 121
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 604
AjuI GAANNNNNNNTTGG 2 cut(s) 1209, 1241
AloI GAACNNNNNNTCC 2 cut(s) 1066, 1098
AluBI AGCT 9 cut(s) 57, 147, 222, 235, 852, 900, 1067, 1077, 1169
AluI AGCT 9 cut(s) 57, 147, 222, 235, 852, 900, 1067, 1077, 1169
Alw21I GWGCWC 3 cut(s) 59, 902, 1079
Alw26I GTCTC 3 cut(s) 1004, 1097, 1244
AlwI GGATC 7 cut(s) 95, 257, 919, 1095, 1121, 1134, 1279
AlwNI CAGNNNCTG 1 cut(s) 1070
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 6 cut(s) 132, 355, 493, 562, 1061, 1064
ApoI RAATTY 3 cut(s) 416, 703, 874
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 2 cut(s) 453, 1154
AspS9I GGNCC 1 cut(s) 694
AsuHPI GGTGA 5 cut(s) 61, 906, 1046, 1241, 1259
AvaII GGWCC 1 cut(s) 694
BamHI GGATCC 1 cut(s) 1126
BanII GRGCYC 4 cut(s) 59, 902, 1079, 1238
BauI CACGAG 1 cut(s) 980
Bbv12I GWGCWC 3 cut(s) 59, 902, 1079
BbvI GCAGC 6 cut(s) 144, 367, 505, 574, 1073, 1076
BccI CCATC 4 cut(s) 544, 1142, 1365, 1366
BceAI ACGGC 2 cut(s) 45, 60
BciT130I CCWGG 1 cut(s) 606
BcoDI GTCTC 3 cut(s) 1004, 1097, 1244
BfaI CTAG 4 cut(s) 584, 819, 1163, 1304
BfmI CTRYAG 3 cut(s) 21, 521, 951
BfuAI ACCTGC 1 cut(s) 352
BisI GCNGC 7 cut(s) 133, 356, 494, 563, 736, 1062, 1065
BlsI GCNGC 7 cut(s) 134, 357, 495, 564, 737, 1063, 1066
Bme1390I CCNGG 1 cut(s) 606
Bme18I GGWCC 1 cut(s) 694
BmeRI GACNNNNNGTC 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 694
BmiI GGNNCC 1 cut(s) 1128
BmrFI CCNGG 1 cut(s) 606
BmrI ACTGGG 1 cut(s) 1232
BmsI GCATC 3 cut(s) 760, 1088, 1381
BmuI ACTGGG 1 cut(s) 1232
BplI GAGNNNNNCTC 2 cut(s) 1250, 1282
BpmI CTGGAG 1 cut(s) 202
BpuEI CTTGAG 4 cut(s) 357, 820, 1014, 1063
Bsa29I ATCGAT 1 cut(s) 761
BsaI GGTCTC 1 cut(s) 1004
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 1066, 1096
Bsc4I CCNNNNNNNGG 3 cut(s) 472, 1055, 1244
Bse1I ACTGG 1 cut(s) 1238
Bse3DI GCAATG 1 cut(s) 975
BseBI CCWGG 1 cut(s) 606
BseCI ATCGAT 1 cut(s) 761
BseGI GGATG 3 cut(s) 941, 1103, 1153
BseLI CCNNNNNNNGG 3 cut(s) 472, 1055, 1244
BseMI GCAATG 1 cut(s) 975
BseMII CTCAG 5 cut(s) 65, 159, 641, 1281, 1313
BseNI ACTGG 1 cut(s) 1238
BseRI GAGGAG 2 cut(s) 691, 892
BseXI GCAGC 6 cut(s) 144, 367, 505, 574, 1073, 1076
BseYI CCCAGC 1 cut(s) 273
BsgI GTGCAG 2 cut(s) 330, 374
Bsh1236I CGCG 1 cut(s) 453
BshFI GGCC 1 cut(s) 306
BshVI ATCGAT 1 cut(s) 761
BsiHKAI GWGCWC 3 cut(s) 59, 902, 1079
BsiSI CCGG 1 cut(s) 334
BsiWI CGTACG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 1389
BslI CCNNNNNNNGG 3 cut(s) 472, 1055, 1244
BsmAI GTCTC 3 cut(s) 1004, 1097, 1244
BsmFI GGGAC 1 cut(s) 1389
BsnI GGCC 1 cut(s) 306
Bso31I GGTCTC 1 cut(s) 1004
Bsp1286I GDGCHC 4 cut(s) 59, 902, 1079, 1238
Bsp143I GATC 7 cut(s) 100, 262, 911, 1036, 1087, 1126, 1271
BspACI CCGC 5 cut(s) 47, 65, 135, 271, 736
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 5 cut(s) 66, 160, 640, 1280, 1314
BspDI ATCGAT 1 cut(s) 761
BspFNI CGCG 1 cut(s) 453
BspLI GGNNCC 1 cut(s) 1128
BspMAI CTGCAG 2 cut(s) 525, 955
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 7 cut(s) 95, 257, 919, 1095, 1121, 1134, 1279
BspTNI GGTCTC 1 cut(s) 1004
BsrDI GCAATG 1 cut(s) 975
BsrI ACTGG 1 cut(s) 1238
BssMI GATC 7 cut(s) 100, 262, 911, 1036, 1087, 1126, 1271
BssSI CACGAG 1 cut(s) 980
Bst2BI CACGAG 1 cut(s) 980
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 3 cut(s) 10, 183, 1221
Bst6I CTCTTC 1 cut(s) 423
BstC8I GCNNGC 2 cut(s) 400, 955
BstDEI CTNAG 7 cut(s) 74, 168, 627, 731, 1267, 1322, 1397
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 3 cut(s) 941, 1103, 1153
BstFNI CGCG 1 cut(s) 453
BstHHI GCGC 2 cut(s) 453, 1154
BstKTI GATC 7 cut(s) 103, 265, 914, 1039, 1090, 1129, 1274
BstMAI GTCTC 3 cut(s) 1004, 1097, 1244
BstMBI GATC 7 cut(s) 100, 262, 911, 1036, 1087, 1126, 1271
BstMWI GCNNNNNNNGC 1 cut(s) 562
BstNI CCWGG 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 604
BstSFI CTRYAG 3 cut(s) 21, 521, 951
BstUI CGCG 1 cut(s) 453
BstV1I GCAGC 6 cut(s) 144, 367, 505, 574, 1073, 1076
BstX2I RGATCY 2 cut(s) 1087, 1126
BstXI CCANNNNNNTGG 1 cut(s) 273
BstYI RGATCY 2 cut(s) 1087, 1126
Bsu15I ATCGAT 1 cut(s) 761
BsuRI GGCC 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 761
BtgZI GCGATG 1 cut(s) 879
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 3 cut(s) 941, 1103, 1153
BtsIMutI CAGTG 2 cut(s) 1245, 1281
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 2 cut(s) 400, 955
CaiI CAGNNNCTG 1 cut(s) 1070
CfoI GCGC 2 cut(s) 453, 1154
Cfr13I GGNCC 1 cut(s) 694
ClaI ATCGAT 1 cut(s) 761
Csp6I GTAC 2 cut(s) 85, 976
CspCI CAANNNNNGTGG 2 cut(s) 968, 1003
CviAII CATG 4 cut(s) 545, 716, 824, 1006
CviQI GTAC 2 cut(s) 85, 976
DdeI CTNAG 7 cut(s) 74, 168, 627, 731, 1267, 1322, 1397
DpnI GATC 7 cut(s) 102, 264, 913, 1038, 1089, 1128, 1273
DpnII GATC 7 cut(s) 100, 262, 911, 1036, 1087, 1126, 1271
DriI GACNNNNNGTC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 423
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 423
EciI GGCGGA 1 cut(s) 54
Ecl136II GAGCTC 3 cut(s) 57, 900, 1077
Eco24I GRGCYC 4 cut(s) 59, 902, 1079, 1238
Eco31I GGTCTC 1 cut(s) 1004
Eco32I GATATC 1 cut(s) 752
Eco47I GGWCC 1 cut(s) 694
Eco53kI GAGCTC 3 cut(s) 57, 900, 1077
Eco57I CTGAAG 3 cut(s) 431, 939, 1215
EcoICRI GAGCTC 3 cut(s) 57, 900, 1077
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 604
EcoRV GATATC 1 cut(s) 752
EcoT38I GRGCYC 4 cut(s) 59, 902, 1079, 1238
FaeI CATG 4 cut(s) 548, 719, 827, 1009
FaiI YATR 8 cut(s) 92, 246, 470, 546, 717, 785, 825, 1007
FaqI GGGAC 1 cut(s) 1389
FatI CATG 4 cut(s) 544, 715, 823, 1005
Fnu4HI GCNGC 7 cut(s) 133, 356, 494, 563, 736, 1062, 1065
FokI GGATG 3 cut(s) 928, 1110, 1160
FriOI GRGCYC 4 cut(s) 59, 902, 1079, 1238
Fsp4HI GCNGC 7 cut(s) 133, 356, 494, 563, 736, 1062, 1065
FspBI CTAG 4 cut(s) 584, 819, 1163, 1304
GlaI GCGC 2 cut(s) 452, 1153
GluI GCNGC 7 cut(s) 133, 356, 494, 563, 736, 1062, 1065
GsaI CCCAGC 1 cut(s) 277
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 1 cut(s) 306
HapII CCGG 1 cut(s) 334
HhaI GCGC 2 cut(s) 453, 1154
Hin1II CATG 4 cut(s) 548, 719, 827, 1009
Hin6I GCGC 2 cut(s) 451, 1152
HinP1I GCGC 2 cut(s) 451, 1152
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 5 cut(s) 17, 423, 827, 1205, 1342
HpaII CCGG 1 cut(s) 334
HphI GGTGA 5 cut(s) 61, 906, 1046, 1241, 1259
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 7 cut(s) 75, 230, 661, 889, 1087, 1390, 1400
Hpy188III TCNNGA 3 cut(s) 266, 1193, 1269
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 3 cut(s) 31, 46, 119
HpyCH4III ACNGT 3 cut(s) 10, 183, 1221
HpyCH4IV ACGT 4 cut(s) 83, 117, 162, 462
HpyCH4V TGCA 9 cut(s) 284, 347, 355, 472, 523, 773, 815, 953, 968
HpyF10VI GCNNNNNNNGC 1 cut(s) 562
HpyF3I CTNAG 7 cut(s) 74, 168, 627, 731, 1267, 1322, 1397
HpySE526I ACGT 4 cut(s) 83, 117, 162, 462
Hsp92II CATG 4 cut(s) 548, 719, 827, 1009
HspAI GCGC 2 cut(s) 451, 1152
Kzo9I GATC 7 cut(s) 100, 262, 911, 1036, 1087, 1126, 1271
LmnI GCTCC 9 cut(s) 62, 129, 553, 897, 905, 1058, 1074, 1297, 1335
Lsp1109I GCAGC 6 cut(s) 144, 367, 505, 574, 1073, 1076
LweI GCATC 3 cut(s) 760, 1088, 1381
MaeI CTAG 4 cut(s) 584, 819, 1163, 1304
MaeII ACGT 4 cut(s) 83, 117, 162, 462
MaeIII GTNAC 3 cut(s) 505, 922, 1308
MalI GATC 7 cut(s) 102, 264, 913, 1038, 1089, 1128, 1273
MboI GATC 7 cut(s) 100, 262, 911, 1036, 1087, 1126, 1271
MboII GAAGA 2 cut(s) 30, 440
MflI RGATCY 2 cut(s) 1087, 1126
MhlI GDGCHC 4 cut(s) 59, 902, 1079, 1238
MluCI AATT 6 cut(s) 211, 416, 620, 703, 874, 1015
MlyI GAGTC 1 cut(s) 417
MmeI TCCRAC 2 cut(s) 1073, 1075
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 5 cut(s) 299, 614, 723, 1178, 1262
MspA1I CMGCKG 2 cut(s) 135, 273
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 606
MvaI CCWGG 1 cut(s) 606
MvnI CGCG 1 cut(s) 453
MwoI GCNNNNNNNGC 1 cut(s) 562
NdeII GATC 7 cut(s) 100, 262, 911, 1036, 1087, 1126, 1271
NlaIII CATG 4 cut(s) 548, 719, 827, 1009
NlaIV GGNNCC 1 cut(s) 1128
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 4 cut(s) 17, 827, 1205, 1342
Pfl23II CGTACG 1 cut(s) 84
PflMI CCANNNNNTGG 1 cut(s) 1244
PkrI GCNGC 7 cut(s) 134, 357, 495, 564, 737, 1063, 1066
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
Psp124BI GAGCTC 3 cut(s) 59, 902, 1079
Psp6I CCWGG 1 cut(s) 604
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 1 cut(s) 604
PspLI CGTACG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 1128
PspPI GGNCC 1 cut(s) 694
PstI CTGCAG 2 cut(s) 525, 955
PstNI CAGNNNCTG 1 cut(s) 1070
PsuI RGATCY 2 cut(s) 1087, 1126
RsaI GTAC 2 cut(s) 86, 977
RsaNI GTAC 2 cut(s) 85, 976
SacI GAGCTC 3 cut(s) 59, 902, 1079
SaqAI TTAA 5 cut(s) 299, 614, 723, 1178, 1262
SatI GCNGC 7 cut(s) 133, 356, 494, 563, 736, 1062, 1065
Sau3AI GATC 7 cut(s) 100, 262, 911, 1036, 1087, 1126, 1271
Sau96I GGNCC 1 cut(s) 694
SbfI CCTGCAGG 1 cut(s) 955
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 1 cut(s) 606
SdaI CCTGCAGG 1 cut(s) 955
SduI GDGCHC 4 cut(s) 59, 902, 1079, 1238
SfaNI GCATC 3 cut(s) 760, 1088, 1381
SfcI CTRYAG 3 cut(s) 21, 521, 951
SinI GGWCC 1 cut(s) 694
SmlI CTYRAG 4 cut(s) 372, 835, 1029, 1078
SmoI CTYRAG 4 cut(s) 372, 835, 1029, 1078
Sse8387I CCTGCAGG 1 cut(s) 955
Sse9I AATT 6 cut(s) 211, 416, 620, 703, 874, 1015
SsiI CCGC 5 cut(s) 47, 65, 135, 271, 736
SspMI CTAG 4 cut(s) 584, 819, 1163, 1304
SstI GAGCTC 3 cut(s) 59, 902, 1079
StyD4I CCNGG 1 cut(s) 604
TaaI ACNGT 3 cut(s) 10, 183, 1221
TaiI ACGT 4 cut(s) 86, 120, 165, 465
TaqI TCGA 4 cut(s) 41, 426, 761, 1158
TasI AATT 6 cut(s) 211, 416, 620, 703, 874, 1015
TauI GCSGC 1 cut(s) 738
TfiI GAWTC 4 cut(s) 17, 827, 1205, 1342
Tru1I TTAA 5 cut(s) 299, 614, 723, 1178, 1262
Tru9I TTAA 5 cut(s) 299, 614, 723, 1178, 1262
TscAI CASTG 2 cut(s) 1245, 1281
TseI GCWGC 6 cut(s) 132, 355, 493, 562, 1061, 1064
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 2 cut(s) 1245, 1281
Van91I CCANNNNNTGG 1 cut(s) 1244
VpaK11BI GGWCC 1 cut(s) 694
XagI CCTNNNNNAGG 1 cut(s) 470
XapI RAATTY 3 cut(s) 416, 703, 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 704
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 4 cut(s) 584, 819, 1163, 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.