Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008306

Physical Location & Seq

Genomic Coordinates Forward (+)

5530195 .. 5532889

Gene Structure 2695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGAATCGGTTCCCGAATCCGTACCATCGCCGAACTCGAATACACCGTCAATACCACCGCCGGTGAACTCCGTACCGCCTTTCTTGAGTAAAACCTACGACATGGTTGATGATCCGTTGACCAATGAGGTCGTTTCGTGGAGCAGCGGGAACAACAGCTTCGTCGTCTGGAGTGCCCCGGAGTTCTCGAAGGTGCTCTTGCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTAAATACTTATGGTTTCAGAAAAGTTGATCCTGACCGATGGGAATTTGCAAATGAAGGATTTCTTAGAGGCCGAAAACAACTACTGAAGAGTATTGTCAGGAGAAAACCTTCGCATGTGCAGCAGAATCAGCAACAAACTCAAGTTCAGAGCTCATCTGTTGGTGCTTGTGTCGAGGTGGGGAAGTTTGGAATAGAAGAAGAAGTGGAAAGACTTAAGCGGGATAAGAATGTTCTTATGCAAGAACTCGTCAGGTTAAGGCAGCAACAGCAAGCTACTGAAAACCAACTGCAGAATGTGGGACAGAAAGTTCAGGTGATGGAGCAAAGGCAACAACAAATGATGTCGTTTTTAGCAAAGGCTGTTCAAAGTCCAGGTTTCTTAAACCAGTTAGTACAACAGAATAATAATGATGGCAACAGACAAATTCCAGGAAGCAACAAAAAGAGGAGACTTCCTGTAGATGAGCAGGAGAATCGTGGTGACAATGTGGCTAATGGTCTTAACCGCCAGATTGTTAGATATCAGCCGTCGATAAACGAAGCAGCACAAAATATGCTTCGACAGTTCTTAAATACTAGTACCTCACCTCGGTATGAATCAGTTTCAAACAATCCTGACAGTTTCCTATTGGGTGATGTTCCCAGTTCTACCTCTGTAGACAATGGGAACCCTTCAAGTAGAGTTTCTGGAGTAACATTGGCCGAGTTTTCACCCAACACAGTTCAGTCAGCAACGAATCAAGTACCCGAAGCAAGTTTGGCTCATCATCCTCAAGCTGGTCTGGTTCAGCCAAATATAGGTCAAAGTCCGGCTCAAGGAGCAGCACCTGCAGACTCTTGGAGCCCTGAATTTGATTTAGTTGGATGCGAGACAGATAGTGGAGAGTGTTTTGATCCAATAATGGCTGTTTTAGATGAGTCAGAAGGCGATGCAATTTCTCCTGAAGGTGAGGGCAAGATGAATGAGTTACTGGAGGGAGTCCCTAAGCTGCCCGGAATCCAAGATCCATTCTGGGAACAGTTCTTTTCTGTTGAACTCCCAGCGATTGCAGATACAGACGATATTCTATCAGGATCAGTGGAGAATAATGACTTGGTATTGGAACAAGAACCAAACGAGTGGACCCGTAATGAACAACAAATGAAGTATCTTACTGAACAAATGGGACTGCTTTCCTCAGAAGCACAGAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

481

Amino Acids

53.58

Weight (kDa)

4.8

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	28 - 117	2.1e-28	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02990 AT5G16820 AT5G16820
fragaria_vesca	FvH4_3g16090
malus_domestica	MD05G1213800.v1.1 MD10G1197700.v1.1
prunus_persica	Prupe.4G144200_v2.0.a1 Prupe.4G144200_v2.0.a1
pyrus_communis	pycom05g19750 pycom05g19760 pycom10g17040
rosa_chinensis	RchiOBHm_Chr5g0027071
rosa_laevigata	RLG00000032987
rosa_multiflora	Rmu_sc0000882.1_g000025 Rmu_sc0020624.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052420 Rroxscaffold_3G00251920
rosa_rugosa	Rorug05G0097100
rosa_samantha	Rh5AG190700 Rh5BG188300 Rh5CG208100 Rh5DG190100
rosa_wichuraiana	Rw5G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1084
Acc36I	ACCTGC	1 cut(s)	1084
AccI	GTMKAC	1 cut(s)	906
AciI	CCGC	5 cut(s)	59, 77, 147, 466, 754
AclWI	GGATC	5 cut(s)	107, 269, 1136, 1247, 1330
AcoI	YGGCCR	1 cut(s)	948
AcsI	RAATTY	3 cut(s)	290, 672, 1097
AcuI	CTGAAG	2 cut(s)	353, 1212
AfaI	GTAC	5 cut(s)	24, 75, 642, 829, 993
AfiI	CCNNNNNNNGG	4 cut(s)	837, 1025, 1046, 1064
AflII	CTTAAG	1 cut(s)	461
AgsI	TTSAA	5 cut(s)	214, 614, 855, 924, 1283
AhlI	ACTAGT	1 cut(s)	824
AjnI	CCWGG	2 cut(s)	619, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	1325, 1357
AloI	GAACNNNNNNTCC	2 cut(s)	540, 572
AluBI	AGCT	6 cut(s)	159, 234, 399, 521, 1025, 1237
AluI	AGCT	6 cut(s)	159, 234, 399, 521, 1025, 1237
Alw21I	GWGCWC	2 cut(s)	198, 401
Alw26I	GTCTC	2 cut(s)	691, 1112
AlwI	GGATC	5 cut(s)	107, 269, 1136, 1247, 1330
AlwNI	CAGNNNCTG	1 cut(s)	1076
AoxI	GGCC	2 cut(s)	316, 948
ApeKI	GCWGC	6 cut(s)	144, 367, 508, 791, 1070, 1237
ApoI	RAATTY	3 cut(s)	290, 672, 1097
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
Asp700I	GAANNNNTTC	3 cut(s)	9, 306, 355
AspS9I	GGNCC	1 cut(s)	1371
AsuC2I	CCSGG	2 cut(s)	179, 1242
AsuHPI	GGTGA	7 cut(s)	76, 574, 740, 825, 893, 951, 1208
AvaII	GGWCC	1 cut(s)	1371
BaeGI	GKGCMC	1 cut(s)	178
BanII	GRGCYC	2 cut(s)	401, 1094
Bbv12I	GWGCWC	2 cut(s)	198, 401
BbvI	GCAGC	6 cut(s)	156, 379, 520, 803, 1082, 1224
BccI	CCATC	4 cut(s)	34, 279, 559, 653
BceAI	ACGGC	1 cut(s)	760
BcgI	CGANNNNNNTGC	2 cut(s)	704, 738
BciT130I	CCWGG	2 cut(s)	621, 678
BcnI	CCSGG	2 cut(s)	179, 1242
BcoDI	GTCTC	2 cut(s)	691, 1112
BcuI	ACTAGT	1 cut(s)	824
BfaI	CTAG	1 cut(s)	825
BfmI	CTRYAG	4 cut(s)	536, 705, 903, 1077
BfrI	CTTAAG	1 cut(s)	461
BfuAI	ACCTGC	1 cut(s)	1084
BisI	GCNGC	6 cut(s)	145, 368, 509, 792, 1071, 1238
BlsI	GCNGC	6 cut(s)	146, 369, 510, 793, 1072, 1239
Bme1390I	CCNGG	4 cut(s)	179, 621, 678, 1242
Bme18I	GGWCC	1 cut(s)	1371
BmgT120I	GGNCC	1 cut(s)	1371
BmiI	GGNNCC	4 cut(s)	12, 917, 1091, 1373
BmrFI	CCNGG	4 cut(s)	179, 621, 678, 1242
BmrI	ACTGGG	1 cut(s)	885
BmsI	GCATC	2 cut(s)	1103, 1168
BmuI	ACTGGG	1 cut(s)	885
BpmI	CTGGAG	4 cut(s)	190, 214, 957, 1241
Bpu10I	CCTNAGC	1 cut(s)	1233
BpuEI	CTTGAG	4 cut(s)	106, 372, 1005, 1047
BpuMI	CCSGG	2 cut(s)	179, 1242
BsaJI	CCNNGG	2 cut(s)	177, 836
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	4 cut(s)	837, 1025, 1046, 1064
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	3 cut(s)	634, 891, 1224
BseBI	CCWGG	2 cut(s)	621, 678
BseDI	CCNNGG	2 cut(s)	177, 836
BseGI	GGATG	2 cut(s)	1015, 1118
BseLI	CCNNNNNNNGG	4 cut(s)	837, 1025, 1046, 1064
BseMII	CTCAG	1 cut(s)	1440
BseNI	ACTGG	3 cut(s)	634, 891, 1224
BseRI	GAGGAG	1 cut(s)	709
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	6 cut(s)	156, 379, 520, 803, 1082, 1224
BseYI	CCCAGC	1 cut(s)	1288
BsgI	GTGCAG	1 cut(s)	386
BshFI	GGCC	2 cut(s)	318, 950
BsiHKAI	GWGCWC	2 cut(s)	198, 401
BsiSI	CCGG	4 cut(s)	62, 179, 1058, 1242
BslFI	GGGAC	3 cut(s)	561, 1214, 1428
BslI	CCNNNNNNNGG	4 cut(s)	837, 1025, 1046, 1064
BsmAI	GTCTC	2 cut(s)	691, 1112
BsmFI	GGGAC	3 cut(s)	561, 1214, 1428
BsnI	GGCC	2 cut(s)	318, 950
Bsp1286I	GDGCHC	4 cut(s)	178, 198, 401, 1094
Bsp143I	GATC	5 cut(s)	112, 274, 1141, 1252, 1322
BspACI	CCGC	5 cut(s)	59, 77, 147, 466, 754
BspANI	GGCC	2 cut(s)	318, 950
BspCNI	CTCAG	1 cut(s)	1439
BspLI	GGNNCC	4 cut(s)	12, 917, 1091, 1373
BspMAI	CTGCAG	2 cut(s)	540, 1081
BspMI	ACCTGC	1 cut(s)	1084
BspPI	GGATC	5 cut(s)	107, 269, 1136, 1247, 1330
BspTI	CTTAAG	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	3 cut(s)	634, 891, 1224
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	177, 836
BssMI	GATC	5 cut(s)	112, 274, 1141, 1252, 1322
Bst2UI	CCWGG	2 cut(s)	621, 678
Bst4CI	ACNGT	6 cut(s)	48, 246, 813, 869, 970, 1269
Bst6I	CTCTTC	1 cut(s)	329
BstAFI	CTTAAG	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	1076
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	3 cut(s)	311, 1233, 1426
BstF5I	GGATG	2 cut(s)	1015, 1118
BstKTI	GATC	5 cut(s)	115, 277, 1144, 1255, 1325
BstMAI	GTCTC	2 cut(s)	691, 1112
BstMBI	GATC	5 cut(s)	112, 274, 1141, 1252, 1322
BstMWI	GCNNNNNNNGC	6 cut(s)	367, 376, 514, 1007, 1067, 1076
BstNI	CCWGG	2 cut(s)	621, 678
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	4 cut(s)	177, 619, 676, 1240
BstSFI	CTRYAG	4 cut(s)	536, 705, 903, 1077
BstSLI	GKGCMC	1 cut(s)	178
BstV1I	GCAGC	6 cut(s)	156, 379, 520, 803, 1082, 1224
BstX2I	RGATCY	1 cut(s)	1252
BstXI	CCANNNNNNTGG	1 cut(s)	1368
BstYI	RGATCY	1 cut(s)	1252
BsuRI	GGCC	2 cut(s)	318, 950
BtgZI	GCGATG	2 cut(s)	12, 1191
BtsCI	GGATG	2 cut(s)	1015, 1118
BtsIMutI	CAGTG	1 cut(s)	1332
BveI	ACCTGC	1 cut(s)	1084
Cac8I	GCNNGC	1 cut(s)	519
CaiI	CAGNNNCTG	1 cut(s)	1076
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	1371
Csp6I	GTAC	5 cut(s)	23, 74, 641, 828, 992
CviAII	CATG	2 cut(s)	103, 362
CviQI	GTAC	5 cut(s)	23, 74, 641, 828, 992
DdeI	CTNAG	3 cut(s)	311, 1233, 1426
DpnI	GATC	5 cut(s)	114, 276, 1143, 1254, 1324
DpnII	GATC	5 cut(s)	112, 274, 1141, 1252, 1322
EaeI	YGGCCR	1 cut(s)	948
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	399
Eco24I	GRGCYC	2 cut(s)	401, 1094
Eco32I	GATATC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	1371
Eco53kI	GAGCTC	1 cut(s)	399
Eco57I	CTGAAG	2 cut(s)	353, 1212
EcoICRI	GAGCTC	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	619, 676
EcoRV	GATATC	1 cut(s)	770
EcoT38I	GRGCYC	2 cut(s)	401, 1094
FaeI	CATG	2 cut(s)	106, 365
FaiI	YATR	7 cut(s)	104, 258, 363, 485, 803, 843, 1046
FalI	AAGNNNNNCTT	4 cut(s)	182, 214, 294, 326
FaqI	GGGAC	3 cut(s)	561, 1214, 1428
FatI	CATG	2 cut(s)	102, 361
FauI	CCCGC	2 cut(s)	140, 459
FblI	GTMKAC	1 cut(s)	906
Fnu4HI	GCNGC	6 cut(s)	145, 368, 509, 792, 1071, 1238
FokI	GGATG	2 cut(s)	1002, 1125
FriOI	GRGCYC	2 cut(s)	401, 1094
Fsp4HI	GCNGC	6 cut(s)	145, 368, 509, 792, 1071, 1238
FspBI	CTAG	1 cut(s)	825
GluI	GCNGC	6 cut(s)	145, 368, 509, 792, 1071, 1238
GsaI	CCCAGC	1 cut(s)	1292
GsuI	CTGGAG	4 cut(s)	190, 214, 957, 1241
HaeIII	GGCC	2 cut(s)	318, 950
HapII	CCGG	4 cut(s)	62, 179, 1058, 1242
Hin1II	CATG	2 cut(s)	106, 365
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HpaII	CCGG	4 cut(s)	62, 179, 1058, 1242
HphI	GGTGA	7 cut(s)	76, 574, 740, 825, 893, 951, 1208
Hpy166II	GTNNAC	4 cut(s)	67, 120, 907, 1371
Hpy188I	TCNGA	5 cut(s)	242, 266, 396, 1171, 1429
Hpy8I	GTNNAC	4 cut(s)	67, 120, 907, 1371
Hpy99I	CGWCG	2 cut(s)	167, 781
HpyAV	CCTTC	6 cut(s)	184, 296, 366, 930, 1166, 1187
HpyCH4III	ACNGT	6 cut(s)	48, 246, 813, 869, 970, 1269
HpyCH4V	TGCA	7 cut(s)	296, 367, 487, 538, 1079, 1181, 1298
HpyF10VI	GCNNNNNNNGC	6 cut(s)	367, 376, 514, 1007, 1067, 1076
HpyF3I	CTNAG	3 cut(s)	311, 1233, 1426
Hsp92II	CATG	2 cut(s)	106, 365
Kzo9I	GATC	5 cut(s)	112, 274, 1141, 1252, 1322
LmnI	GCTCC	4 cut(s)	141, 568, 1067, 1089
Lsp1109I	GCAGC	6 cut(s)	156, 379, 520, 803, 1082, 1224
LweI	GCATC	2 cut(s)	1103, 1168
MaeI	CTAG	1 cut(s)	825
MaeIII	GTNAC	3 cut(s)	728, 940, 1215
MalI	GATC	5 cut(s)	114, 276, 1143, 1254, 1324
MboI	GATC	5 cut(s)	112, 274, 1141, 1252, 1322
MboII	GAAGA	3 cut(s)	346, 455, 458
MflI	RGATCY	1 cut(s)	1252
MhlI	GDGCHC	4 cut(s)	178, 198, 401, 1094
MluCI	AATT	4 cut(s)	290, 672, 1097, 1182
MlyI	GAGTC	3 cut(s)	1076, 1175, 1236
MmeI	TCCRAC	1 cut(s)	1090
MroXI	GAANNNNTTC	3 cut(s)	9, 306, 355
MseI	TTAA	6 cut(s)	248, 462, 503, 629, 750, 818
MspA1I	CMGCKG	1 cut(s)	147
MspCI	CTTAAG	1 cut(s)	461
MspI	CCGG	4 cut(s)	62, 179, 1058, 1242
MspR9I	CCNGG	4 cut(s)	179, 621, 678, 1242
MvaI	CCWGG	2 cut(s)	621, 678
MwoI	GCNNNNNNNGC	6 cut(s)	367, 376, 514, 1007, 1067, 1076
NciI	CCSGG	2 cut(s)	179, 1242
NdeII	GATC	5 cut(s)	112, 274, 1141, 1252, 1322
NlaIII	CATG	2 cut(s)	106, 365
NlaIV	GGNNCC	4 cut(s)	12, 917, 1091, 1373
NmeAIII	GCCGAG	1 cut(s)	976
NmuCI	GTSAC	1 cut(s)	728
NspI	RCATGY	1 cut(s)	365
PaqCI	CACCTGC	1 cut(s)	1084
PcsI	WCGNNNNNNNCGW	2 cut(s)	35, 44
PdmI	GAANNNNTTC	3 cut(s)	9, 306, 355
PfeI	GAWTC	7 cut(s)	5, 17, 373, 721, 845, 985, 1245
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	6 cut(s)	146, 369, 510, 793, 1072, 1239
PleI	GAGTC	3 cut(s)	1076, 1174, 1235
PpsI	GAGTC	3 cut(s)	1076, 1174, 1235
Psp124BI	GAGCTC	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	619, 676
PspFI	CCCAGC	1 cut(s)	1288
PspGI	CCWGG	2 cut(s)	619, 676
PspN4I	GGNNCC	4 cut(s)	12, 917, 1091, 1373
PspPI	GGNCC	1 cut(s)	1371
PstI	CTGCAG	2 cut(s)	540, 1081
PstNI	CAGNNNCTG	1 cut(s)	1076
PsuI	RGATCY	1 cut(s)	1252
RsaI	GTAC	5 cut(s)	24, 75, 642, 829, 993
RsaNI	GTAC	5 cut(s)	23, 74, 641, 828, 992
SacI	GAGCTC	1 cut(s)	401
SaqAI	TTAA	6 cut(s)	248, 462, 503, 629, 750, 818
SatI	GCNGC	6 cut(s)	145, 368, 509, 792, 1071, 1238
Sau3AI	GATC	5 cut(s)	112, 274, 1141, 1252, 1322
Sau96I	GGNCC	1 cut(s)	1371
SchI	GAGTC	3 cut(s)	1076, 1175, 1236
ScrFI	CCNGG	4 cut(s)	179, 621, 678, 1242
SduI	GDGCHC	4 cut(s)	178, 198, 401, 1094
SfaNI	GCATC	2 cut(s)	1103, 1168
SfcI	CTRYAG	4 cut(s)	536, 705, 903, 1077
SgrAI	CRCCGGYG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	1371
SmlI	CTYRAG	5 cut(s)	85, 387, 461, 1020, 1062
SmoI	CTYRAG	5 cut(s)	85, 387, 461, 1020, 1062
SpeI	ACTAGT	1 cut(s)	824
Sse9I	AATT	4 cut(s)	290, 672, 1097, 1182
SsiI	CCGC	5 cut(s)	59, 77, 147, 466, 754
SspMI	CTAG	1 cut(s)	825
SstI	GAGCTC	1 cut(s)	401
StyD4I	CCNGG	4 cut(s)	177, 619, 676, 1240
TaaI	ACNGT	6 cut(s)	48, 246, 813, 869, 970, 1269
TaqI	TCGA	5 cut(s)	38, 188, 420, 779, 808
TaqII	GACCGA	1 cut(s)	297
TasI	AATT	4 cut(s)	290, 672, 1097, 1182
TatI	WGTACW	1 cut(s)	640
TfiI	GAWTC	7 cut(s)	5, 17, 373, 721, 845, 985, 1245
Tru1I	TTAA	6 cut(s)	248, 462, 503, 629, 750, 818
Tru9I	TTAA	6 cut(s)	248, 462, 503, 629, 750, 818
TscAI	CASTG	1 cut(s)	1332
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	6 cut(s)	144, 367, 508, 791, 1070, 1237
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	5 cut(s)	315, 858, 1223, 1395, 1406
TspGWI	ACGGA	3 cut(s)	10, 61, 105
TspRI	CASTG	1 cut(s)	1332
Vha464I	CTTAAG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	1371
XapI	RAATTY	3 cut(s)	290, 672, 1097
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	906
XmnI	GAANNNNTTC	3 cut(s)	9, 306, 355
XspI	CTAG	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.