Rorug05G0097100

Heat stress transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008306
Physical Location & Seq
Reverse (-)
8586870 .. 8590023
3154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0097100.1

Sequence Viewer

Length: 1113 bp
ATGGGTTTCACAATGGGTCTGAACCTGCTTCTCTTAATGGCCATGGTGGCCACCAACATTCTCTCCCTCTACCACCTCTCCTCCACCATCCAATCCCCCAAACAATCCCCCCCTCCCAAAAACCCAGTCCCTGATCACCTCCTCCACCAGCTCCACACCATACGCGCCACCATCAACCACCTCACGCGCAGCCACCCGCCTCCACGCGCCGCTTCCTCCTCCACCTTCAAACCCTCCTCGGATCTCCTCCTCTACTCCCGCCTCTCCCCAATAGCCTCCTCCTGCCACAACCACCCTGACGTCCTCAACAAGTACATGGACTACACACCCTTCTCGCTCTGCCCCGCCGACTCCGACATTGCCGAGACTCTCATCCTCCGCGGCTGCCACCCCCTCCCTCGCCGCCGATGCTTCTCCAGAACGCCGCAGAAGCCCACATCTTCACTTTCTCATGACCCTTTCGCTTCTTCTCTCCCGGATCAAAATGTCCTATGGGACAAGTACACCTGCAAGAGCTTCAGCTGCCTCAACCGCCACCATCCCACCTCCGGTTTCGATTTGAACGGCGAGCTGACCAATTTTATGACCTACAAGTCCGAGCTGGACCTCCCCATCCCGCAGCTCTTCCAAATCGCCAAGGCCGCCGGGGCTGTCCTCCGCCTCGGCCTCGACATCGGCGGCGGCACCGGGACATTCGCCGCCAGGATGAAGCTGTACAATGTGACGGTTGTTACCACAACGATGAATTTTGGCGCGCCGAACAATGAGGCGGTGGCGCTGAGGGGGCTGGTGCCGCTGCACGTGCCGCTGCAGCAGCGGTTTCCGGTGTTCGATGGGGTGATGGATCTGGTGCGGTGCGGGCACGCGGTGAACAGGTGGATTCCGGTGACGGCGTTGGAGTTTTTGTTGTATGATGCGGATAGGGTGTTGAGGGGAGGAGGGTACTTGTGGTTGGATCATTTCTTCAGCAAGGGGGTGGATCTCGAGAAGGTTTTCGGGCCGTTGATTGGGAAGTTGGGGTACCGGAGAGTGAAGTGGGCGACGGCGAGTAAGAATGAGAAGAATGGGGAGGTTTACTTGACTGCTCTTCTGCAAAAGCCTGTCTCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HSF_DNA-bind

Protein Analysis

370

Amino Acids

41.08

Weight (kDa)

9.42

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 515
AasI GACNNNNNNGTC 1 cut(s) 592
AatII GACGTC 1 cut(s) 303
Acc36I ACCTGC 2 cut(s) 33, 515
Acc65I GGTACC 1 cut(s) 1020
AccB1I GGYRCC 3 cut(s) 683, 790, 1020
AccII CGCG 6 cut(s) 165, 187, 207, 381, 755, 866
AclWI GGATC 5 cut(s) 249, 486, 852, 963, 987
AcoI YGGCCR 2 cut(s) 39, 48
AcsI RAATTY 1 cut(s) 745
AcuI CTGAAG 2 cut(s) 502, 949
AcvI CACGTG 1 cut(s) 802
AcyI GRCGYC 1 cut(s) 300
AdeI CACNNNGTG 1 cut(s) 868
AfaI GTAC 5 cut(s) 314, 503, 716, 944, 1022
AfiI CCNNNNNNNGG 2 cut(s) 548, 1007
AgsI TTSAA 2 cut(s) 229, 562
AjnI CCWGG 1 cut(s) 701
AluBI AGCT 7 cut(s) 151, 516, 522, 571, 601, 622, 712
AluI AGCT 7 cut(s) 151, 516, 522, 571, 601, 622, 712
Alw26I GTCTC 2 cut(s) 359, 1108
AlwI GGATC 5 cut(s) 249, 486, 852, 963, 987
AlwNI CAGNNNCTG 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 983
AoxI GGCC 5 cut(s) 39, 48, 639, 664, 998
ApeKI GCWGC 8 cut(s) 189, 384, 522, 619, 796, 808, 811, 814
ApoI RAATTY 1 cut(s) 745
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AscI GGCGCGCC 1 cut(s) 753
Asp700I GAANNNNTTC 1 cut(s) 992
Asp718I GGTACC 1 cut(s) 1020
AspLEI GCGC 6 cut(s) 167, 189, 209, 755, 757, 778
AspS9I GGNCC 2 cut(s) 604, 998
AsuC2I CCSGG 3 cut(s) 476, 646, 688
AsuHPI GGTGA 4 cut(s) 128, 850, 880, 898
AvaI CYCGRG 1 cut(s) 983
AvaII GGWCC 1 cut(s) 604
BaeGI GKGCMC 1 cut(s) 864
BalI TGGCCA 2 cut(s) 41, 50
BanI GGYRCC 3 cut(s) 683, 790, 1020
BarI GAAGNNNNNNTAC 2 cut(s) 1004, 1036
BbrPI CACGTG 1 cut(s) 802
BbvCI CCTCAGC 1 cut(s) 779
BbvI GCAGC 8 cut(s) 201, 371, 509, 631, 783, 795, 823, 826
BccI CCATC 6 cut(s) 95, 179, 546, 620, 827, 835
BceAI ACGGC 4 cut(s) 580, 906, 985, 1059
BciT130I CCWGG 1 cut(s) 703
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 3 cut(s) 476, 646, 688
BcoDI GTCTC 2 cut(s) 359, 1108
BfmI CTRYAG 1 cut(s) 809
BfoI RGCGCY 1 cut(s) 779
BfuAI ACCTGC 2 cut(s) 33, 515
BglI GCCNNNNNGGC 2 cut(s) 47, 647
Bme1390I CCNGG 4 cut(s) 476, 646, 688, 703
Bme18I GGWCC 1 cut(s) 604
BmeT110I CYCGRG 1 cut(s) 983
BmgT120I GGNCC 2 cut(s) 604, 998
BmiI GGNNCC 3 cut(s) 685, 792, 1022
BmrFI CCNGG 4 cut(s) 476, 646, 688, 703
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 2 cut(s) 398, 904
BmuI ACTGGG 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 400
Bpu10I CCTNAGC 1 cut(s) 779
BpuEI CTTGAG 1 cut(s) 1090
BpuMI CCSGG 3 cut(s) 476, 646, 688
BsaAI YACGTR 1 cut(s) 802
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 6 cut(s) 42, 237, 379, 636, 645, 661
BsaWI WCCGGW 4 cut(s) 548, 823, 883, 1023
BsaXI ACNNNNNCTCC 8 cut(s) 47, 62, 65, 77, 92, 95, 890, 920
Bsc4I CCNNNNNNNGG 2 cut(s) 548, 1007
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 703
BseDI CCNNGG 6 cut(s) 42, 237, 379, 636, 645, 661
BseGI GGATG 5 cut(s) 87, 372, 538, 612, 711
BseLI CCNNNNNNNGG 2 cut(s) 548, 1007
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 1 cut(s) 770
BseNI ACTGG 1 cut(s) 125
BsePI GCGCGC 1 cut(s) 753
BseRI GAGGAG 8 cut(s) 70, 131, 208, 226, 236, 239, 268, 951
BseSI GKGCMC 1 cut(s) 864
BseXI GCAGC 8 cut(s) 201, 371, 509, 631, 783, 795, 823, 826
BsgI GTGCAG 1 cut(s) 782
Bsh1236I CGCG 6 cut(s) 165, 187, 207, 381, 755, 866
BshFI GGCC 5 cut(s) 41, 50, 641, 666, 1000
BshNI GGYRCC 3 cut(s) 683, 790, 1020
BsiHKCI CYCGRG 1 cut(s) 983
BsiSI CCGG 7 cut(s) 476, 549, 645, 687, 824, 884, 1024
BslFI GGGAC 3 cut(s) 113, 509, 703
BslI CCNNNNNNNGG 2 cut(s) 548, 1007
BsmAI GTCTC 2 cut(s) 359, 1108
BsmFI GGGAC 3 cut(s) 113, 509, 703
BsnI GGCC 5 cut(s) 41, 50, 641, 666, 1000
BsoBI CYCGRG 1 cut(s) 983
Bsp1286I GDGCHC 1 cut(s) 864
Bsp1407I TGTACA 1 cut(s) 714
Bsp143I GATC 6 cut(s) 133, 241, 478, 844, 955, 979
Bsp19I CCATGG 1 cut(s) 42
BspANI GGCC 5 cut(s) 41, 50, 641, 666, 1000
BspCNI CTCAG 1 cut(s) 771
BspFNI CGCG 6 cut(s) 165, 187, 207, 381, 755, 866
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 3 cut(s) 685, 792, 1022
BspMAI CTGCAG 1 cut(s) 813
BspMI ACCTGC 2 cut(s) 33, 515
BspPI GGATC 5 cut(s) 249, 486, 852, 963, 987
BspQI GCTCTTC 2 cut(s) 629, 1092
BspT107I GGYRCC 3 cut(s) 683, 790, 1020
BsrDI GCAATG 1 cut(s) 357
BsrGI TGTACA 1 cut(s) 714
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 6 cut(s) 42, 237, 379, 636, 645, 661
BssHII GCGCGC 1 cut(s) 753
BssMI GATC 6 cut(s) 133, 241, 478, 844, 955, 979
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 2 cut(s) 42, 636
Bst2UI CCWGG 1 cut(s) 703
Bst4CI ACNGT 1 cut(s) 727
Bst6I CTCTTC 2 cut(s) 629, 1092
BstACI GRCGYC 1 cut(s) 300
BstAUI TGTACA 1 cut(s) 714
BstBAI YACGTR 1 cut(s) 802
BstC8I GCNNGC 4 cut(s) 569, 755, 860, 864
BstDEI CTNAG 1 cut(s) 779
BstDSI CCRYGG 2 cut(s) 42, 379
BstF5I GGATG 5 cut(s) 87, 372, 538, 612, 711
BstFNI CGCG 6 cut(s) 165, 187, 207, 381, 755, 866
BstH2I RGCGCY 1 cut(s) 779
BstHHI GCGC 6 cut(s) 167, 189, 209, 755, 757, 778
BstKTI GATC 6 cut(s) 136, 244, 481, 847, 958, 982
BstMAI GTCTC 2 cut(s) 359, 1108
BstMBI GATC 6 cut(s) 133, 241, 478, 844, 955, 979
BstNI CCWGG 1 cut(s) 703
BstSCI CCNGG 4 cut(s) 474, 644, 686, 701
BstSFI CTRYAG 1 cut(s) 809
BstSLI GKGCMC 1 cut(s) 864
BstUI CGCG 6 cut(s) 165, 187, 207, 381, 755, 866
BstV1I GCAGC 8 cut(s) 201, 371, 509, 631, 783, 795, 823, 826
BstX2I RGATCY 3 cut(s) 241, 844, 979
BstYI RGATCY 3 cut(s) 241, 844, 979
BsuRI GGCC 5 cut(s) 41, 50, 641, 666, 1000
BtgI CCRYGG 2 cut(s) 42, 379
BtsCI GGATG 5 cut(s) 87, 372, 538, 612, 711
BveI ACCTGC 2 cut(s) 33, 515
Cac8I GCNNGC 4 cut(s) 569, 755, 860, 864
CaiI CAGNNNCTG 1 cut(s) 131
CciI TCATGA 1 cut(s) 451
CfoI GCGC 6 cut(s) 167, 189, 209, 755, 757, 778
Cfr13I GGNCC 2 cut(s) 604, 998
Cfr42I CCGCGG 1 cut(s) 382
Csp6I GTAC 5 cut(s) 313, 502, 715, 943, 1021
CviAII CATG 3 cut(s) 43, 316, 452
CviQI GTAC 5 cut(s) 313, 502, 715, 943, 1021
DdeI CTNAG 1 cut(s) 779
DpnI GATC 6 cut(s) 135, 243, 480, 846, 957, 981
DpnII GATC 6 cut(s) 133, 241, 478, 844, 955, 979
DraIII CACNNNGTG 1 cut(s) 868
DrdI GACNNNNNNGTC 1 cut(s) 592
DseDI GACNNNNNNGTC 1 cut(s) 592
EaeI YGGCCR 2 cut(s) 39, 48
Eam1104I CTCTTC 2 cut(s) 629, 1092
EarI CTCTTC 2 cut(s) 629, 1092
EciI GGCGGA 1 cut(s) 647
Eco130I CCWWGG 2 cut(s) 42, 636
Eco47I GGWCC 1 cut(s) 604
Eco57I CTGAAG 2 cut(s) 502, 949
Eco72I CACGTG 1 cut(s) 802
Eco88I CYCGRG 1 cut(s) 983
EcoRII CCWGG 1 cut(s) 701
EcoT14I CCWWGG 2 cut(s) 42, 636
ErhI CCWWGG 2 cut(s) 42, 636
FaeI CATG 3 cut(s) 46, 319, 455
FaiI YATR 7 cut(s) 44, 161, 317, 453, 493, 584, 912
FaqI GGGAC 3 cut(s) 113, 509, 703
FatI CATG 3 cut(s) 42, 315, 451
FauI CCCGC 5 cut(s) 204, 266, 352, 624, 851
FbaI TGATCA 1 cut(s) 133
FokI GGATG 5 cut(s) 74, 359, 525, 599, 718
GlaI GCGC 6 cut(s) 166, 188, 208, 754, 756, 777
GsuI CTGGAG 1 cut(s) 400
HaeII RGCGCY 1 cut(s) 779
HaeIII GGCC 5 cut(s) 41, 50, 641, 666, 1000
HapII CCGG 7 cut(s) 476, 549, 645, 687, 824, 884, 1024
HhaI GCGC 6 cut(s) 167, 189, 209, 755, 757, 778
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 3 cut(s) 46, 319, 455
Hin6I GCGC 6 cut(s) 165, 187, 207, 753, 755, 776
HinP1I GCGC 6 cut(s) 165, 187, 207, 753, 755, 776
HinfI GANTC 3 cut(s) 350, 367, 880
HpaII CCGG 7 cut(s) 476, 549, 645, 687, 824, 884, 1024
HphI GGTGA 4 cut(s) 128, 850, 880, 898
Hpy166II GTNNAC 3 cut(s) 504, 871, 1075
Hpy188I TCNGA 4 cut(s) 21, 241, 355, 598
Hpy188III TCNNGA 5 cut(s) 417, 452, 983, 985, 1107
Hpy8I GTNNAC 3 cut(s) 504, 871, 1075
Hpy99I CGWCG 1 cut(s) 1045
HpyAV CCTTC 3 cut(s) 235, 340, 982
HpyCH4III ACNGT 1 cut(s) 727
HpyCH4IV ACGT 2 cut(s) 300, 801
HpyCH4V TGCA 4 cut(s) 510, 799, 811, 1093
HpyF3I CTNAG 1 cut(s) 779
HpySE526I ACGT 2 cut(s) 300, 801
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 3 cut(s) 46, 319, 455
HspAI GCGC 6 cut(s) 165, 187, 207, 753, 755, 776
KpnI GGTACC 1 cut(s) 1024
Ksp22I TGATCA 1 cut(s) 133
KspI CCGCGG 1 cut(s) 382
Kzo9I GATC 6 cut(s) 133, 241, 478, 844, 955, 979
LguI GCTCTTC 2 cut(s) 629, 1092
LmnI GCTCC 1 cut(s) 156
Lsp1109I GCAGC 8 cut(s) 201, 371, 509, 631, 783, 795, 823, 826
LweI GCATC 2 cut(s) 398, 904
MaeII ACGT 2 cut(s) 300, 801
MaeIII GTNAC 3 cut(s) 721, 730, 886
MalI GATC 6 cut(s) 135, 243, 480, 846, 957, 981
MboI GATC 6 cut(s) 133, 241, 478, 844, 955, 979
MboII GAAGA 6 cut(s) 432, 459, 616, 955, 1072, 1079
MflI RGATCY 3 cut(s) 241, 844, 979
MhlI GDGCHC 1 cut(s) 864
MlsI TGGCCA 2 cut(s) 41, 50
MluCI AATT 2 cut(s) 577, 745
MluNI TGGCCA 2 cut(s) 41, 50
MlyI GAGTC 2 cut(s) 344, 361
MmeI TCCRAC 3 cut(s) 378, 876, 933
Mox20I TGGCCA 2 cut(s) 41, 50
MroXI GAANNNNTTC 1 cut(s) 992
MscI TGGCCA 2 cut(s) 41, 50
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 740
Msp20I TGGCCA 2 cut(s) 41, 50
MspA1I CMGCKG 5 cut(s) 381, 522, 796, 808, 817
MspI CCGG 7 cut(s) 476, 549, 645, 687, 824, 884, 1024
MspR9I CCNGG 4 cut(s) 476, 646, 688, 703
MvaI CCWGG 1 cut(s) 703
MvnI CGCG 6 cut(s) 165, 187, 207, 381, 755, 866
NciI CCSGG 3 cut(s) 476, 646, 688
NcoI CCATGG 1 cut(s) 42
NdeII GATC 6 cut(s) 133, 241, 478, 844, 955, 979
NlaIII CATG 3 cut(s) 46, 319, 455
NlaIV GGNNCC 3 cut(s) 685, 792, 1022
NmeAIII GCCGAG 2 cut(s) 388, 642
NmuCI GTSAC 2 cut(s) 721, 886
PaeR7I CTCGAG 1 cut(s) 983
PagI TCATGA 1 cut(s) 451
PalAI GGCGCGCC 1 cut(s) 753
PaqCI CACCTGC 1 cut(s) 515
PauI GCGCGC 1 cut(s) 753
PciSI GCTCTTC 2 cut(s) 629, 1092
PdmI GAANNNNTTC 1 cut(s) 992
PfeI GAWTC 1 cut(s) 880
PfoI TCCNGGA 1 cut(s) 474
PleI GAGTC 2 cut(s) 344, 361
PmaCI CACGTG 1 cut(s) 802
PmlI CACGTG 1 cut(s) 802
PpsI GAGTC 2 cut(s) 344, 361
Ppu21I YACGTR 1 cut(s) 802
Psp6I CCWGG 1 cut(s) 701
PspCI CACGTG 1 cut(s) 802
PspGI CCWGG 1 cut(s) 701
PspN4I GGNNCC 3 cut(s) 685, 792, 1022
PspPI GGNCC 2 cut(s) 604, 998
PstI CTGCAG 1 cut(s) 813
PstNI CAGNNNCTG 1 cut(s) 131
PsuI RGATCY 3 cut(s) 241, 844, 979
PteI GCGCGC 1 cut(s) 753
PvuII CAGCTG 1 cut(s) 522
RsaI GTAC 5 cut(s) 314, 503, 716, 944, 1022
RsaNI GTAC 5 cut(s) 313, 502, 715, 943, 1021
RseI CAYNNNNRTG 1 cut(s) 740
SacII CCGCGG 1 cut(s) 382
SapI GCTCTTC 2 cut(s) 629, 1092
SaqAI TTAA 1 cut(s) 35
Sau3AI GATC 6 cut(s) 133, 241, 478, 844, 955, 979
Sau96I GGNCC 2 cut(s) 604, 998
SchI GAGTC 2 cut(s) 344, 361
ScrFI CCNGG 4 cut(s) 476, 646, 688, 703
SduI GDGCHC 1 cut(s) 864
SfaNI GCATC 2 cut(s) 398, 904
SfcI CTRYAG 1 cut(s) 809
SfiI GGCCNNNNNGGCC 1 cut(s) 47
Sfr274I CTCGAG 1 cut(s) 983
Sfr303I CCGCGG 1 cut(s) 382
SgrBI CCGCGG 1 cut(s) 382
SgsI GGCGCGCC 1 cut(s) 753
SinI GGWCC 1 cut(s) 604
SlaI CTCGAG 1 cut(s) 983
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 2 cut(s) 983, 1105
SmoI CTYRAG 2 cut(s) 983, 1105
Sse9I AATT 2 cut(s) 577, 745
StyD4I CCNGG 4 cut(s) 474, 644, 686, 701
StyI CCWWGG 2 cut(s) 42, 636
TaaI ACNGT 1 cut(s) 727
TaiI ACGT 2 cut(s) 303, 804
TaqI TCGA 4 cut(s) 555, 669, 831, 984
TasI AATT 2 cut(s) 577, 745
TatI WGTACW 3 cut(s) 312, 501, 714
TfiI GAWTC 1 cut(s) 880
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TseFI GTSAC 2 cut(s) 721, 886
TseI GCWGC 8 cut(s) 189, 384, 522, 619, 796, 808, 811, 814
Tsp45I GTSAC 2 cut(s) 721, 886
TspDTI ATGAA 2 cut(s) 722, 758
VpaK11BI GGWCC 1 cut(s) 604
XapI RAATTY 1 cut(s) 745
XhoI CTCGAG 1 cut(s) 983
XmnI GAANNNNTTC 1 cut(s) 992
ZraI GACGTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.