Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008306

Physical Location & Seq

Genomic Coordinates Forward (+)

45913265 .. 45918272

Gene Structure 5008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00251920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCCGTCATGGGTTCGTGTCCGGGTAGGCCGCCGAACCGAGGTGGGTGCGGCAATACTCGTCGTCTTGCTAGGGTTCCGACAAGAACTGGTATGGGTTCGGGGATGAGGGGTTTTAGAAAAGTTCATCCAGACCGATGGGAATTCGTAAATGAAGGGTTTCTAAGAGGTCAGAAACATCTTTTGAAGACTGTCAATAGGCGACAGCCAGTTAATGTTCAGAGTCATCAACAATCAACACCAGTACCAGCACCTAAAGTAAAGAGCTCCCAAGTTGCTGCATGCGTAGAGGTGGGAAAACTTGGACTGGAGGAGAAGGTTGAAAGGCTTAAAAGGGACAAGAACACTCTTATGCAGGAGCAGCAAGCAACAGATAACCAATTACAGAATGTTGGTCAACGTGTGCAGGGAATGGAACAGCGGCAGCAGCAAATGATGTCATTTCTTGCAAAGGCTATGCATAGTCCTGGCTTTTTATCCCAGCTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

163

Amino Acids

18.24

Weight (kDa)

11.09

Isoelectric Point (pI)

61.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02990 AT5G16820 AT5G16820
fragaria_vesca	FvH4_3g16090
malus_domestica	MD05G1213800.v1.1 MD10G1197700.v1.1
prunus_persica	Prupe.4G144200_v2.0.a1 Prupe.4G144200_v2.0.a1
pyrus_communis	pycom05g19750 pycom05g19760 pycom10g17040
rosa_chinensis	RchiOBHm_Chr5g0027071
rosa_laevigata	RLG00000032987
rosa_multiflora	Rmu_sc0000882.1_g000025 Rmu_sc0020624.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052420 Rroxscaffold_3G00251920
rosa_rugosa	Rorug05G0097100
rosa_samantha	Rh5AG190700 Rh5BG188300 Rh5CG208100 Rh5DG190100
rosa_wichuraiana	Rw5G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	32, 51, 421
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	2 cut(s)	187, 323
AjnI	CCWGG	1 cut(s)	466
AluBI	AGCT	2 cut(s)	267, 484
AluI	AGCT	2 cut(s)	267, 484
Alw21I	GWGCWC	1 cut(s)	269
AoxI	GGCC	2 cut(s)	3, 29
ApeKI	GCWGC	4 cut(s)	278, 361, 424, 427
ApoI	RAATTY	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	24
BaeI	ACNNNNGTAYC	2 cut(s)	228, 261
BanII	GRGCYC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	269
BbvI	GCAGC	4 cut(s)	265, 373, 436, 439
BccI	CCATC	1 cut(s)	132
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BciT130I	CCWGG	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	72
BisI	GCNGC	7 cut(s)	32, 52, 279, 362, 422, 425, 428
BlsI	GCNGC	7 cut(s)	33, 53, 280, 363, 423, 426, 429
Bme1390I	CCNGG	2 cut(s)	24, 468
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	2 cut(s)	24, 468
BpiI	GAAGAC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	4 cut(s)	94, 209, 242, 312
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	2 cut(s)	111, 127
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseNI	ACTGG	4 cut(s)	94, 209, 242, 312
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	4 cut(s)	265, 373, 436, 439
BseYI	CCCAGC	1 cut(s)	480
BsgI	GTGCAG	1 cut(s)	425
BshFI	GGCC	2 cut(s)	5, 31
BsiHKAI	GWGCWC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	5, 31
Bsp1286I	GDGCHC	1 cut(s)	269
BspACI	CCGC	3 cut(s)	32, 51, 421
BspANI	GGCC	2 cut(s)	5, 31
BspLI	GGNNCC	1 cut(s)	78
BsrI	ACTGG	4 cut(s)	94, 209, 242, 312
BssECI	CCNNGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	283, 366
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	2 cut(s)	111, 127
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 427
BstNI	CCWGG	1 cut(s)	468
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	2 cut(s)	22, 466
BstV1I	GCAGC	4 cut(s)	265, 373, 436, 439
BstV2I	GAAGAC	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	5, 31
BtsCI	GGATG	2 cut(s)	111, 127
Cac8I	GCNNGC	2 cut(s)	283, 366
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	2 cut(s)	10, 282
CviJI	RGCY	8 cut(s)	5, 31, 208, 267, 328, 455, 471, 484
CviKI_1	RGCY	8 cut(s)	5, 31, 208, 267, 328, 455, 471, 484
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	269
Eco53kI	GAGCTC	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	466
EcoT22I	ATGCAT	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	269
FaeI	CATG	2 cut(s)	13, 285
FaiI	YATR	6 cut(s)	11, 95, 283, 353, 458, 462
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	2 cut(s)	9, 281
Fnu4HI	GCNGC	7 cut(s)	32, 52, 279, 362, 422, 425, 428
FokI	GGATG	2 cut(s)	114, 118
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	7 cut(s)	32, 52, 279, 362, 422, 425, 428
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	7 cut(s)	32, 52, 279, 362, 422, 425, 428
GsaI	CCCAGC	1 cut(s)	484
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	5, 31
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	2 cut(s)	13, 285
HincII	GTYRAC	1 cut(s)	398
HindII	GTYRAC	1 cut(s)	398
HinfI	GANTC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	3 cut(s)	81, 174, 222
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	398
Hpy99I	CGWCG	1 cut(s)	66
HpyAV	CCTTC	2 cut(s)	149, 310
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	5 cut(s)	281, 355, 406, 449, 460
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 427
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	2 cut(s)	13, 285
LmnI	GCTCC	2 cut(s)	272, 358
Lsp1109I	GCAGC	4 cut(s)	265, 373, 436, 439
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	400
MboII	GAAGA	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	2 cut(s)	143, 380
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	5 cut(s)	35, 102, 161, 283, 304
Mph1103I	ATGCAT	1 cut(s)	462
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	2 cut(s)	213, 330
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	2 cut(s)	24, 468
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	361, 427
NciI	CCSGG	1 cut(s)	24
NlaIII	CATG	2 cut(s)	13, 285
NlaIV	GGNNCC	1 cut(s)	78
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	1 cut(s)	285
PaeI	GCATGC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	159
PkrI	GCNGC	7 cut(s)	33, 53, 280, 363, 423, 426, 429
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	466
PspFI	CCCAGC	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
RseI	CAYNNNNRTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	269
SaqAI	TTAA	2 cut(s)	213, 330
SatI	GCNGC	7 cut(s)	32, 52, 279, 362, 422, 425, 428
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	2 cut(s)	24, 468
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	8 cut(s)	46, 172, 256, 269, 294, 321, 403, 486
SmiMI	CAYNNNNRTG	1 cut(s)	350
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	2 cut(s)	143, 380
SsiI	CCGC	3 cut(s)	32, 51, 421
SspMI	CTAG	1 cut(s)	72
SstI	GAGCTC	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	22, 466
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	403
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	143, 380
TauI	GCSGC	3 cut(s)	34, 54, 424
Tru1I	TTAA	2 cut(s)	213, 330
Tru9I	TTAA	2 cut(s)	213, 330
TseI	GCWGC	4 cut(s)	278, 361, 424, 427
TspDTI	ATGAA	2 cut(s)	116, 168
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.