Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020624.1

Orthogroup ID

OG0008306

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1244

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020624.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 700 bp

atgaacattatagcactattagtggctggaaacaatggctctgttctctattgttatgtgaatggctgttttaatgatttggtgatcttgcgactgggttttagaaaagttcatccagaccgatgggaattcgcaaatgaagggtttctaagaggtcagaaacatcttttgaagactgtcaataggcgaaagccagttaatgtacagagtcatcaacaatcagcaccagtaccagcacctaaagtaaagagctcccaagttgctgcatgcgtagaggtgggaaaacttggactggaggaggaggttgaaaggcttaaaagggacaagaacactcttatgcaggaacttattagtttgaggcaggagcagcaagcaacagataaccaattacagaatgttggtcaacgtgtgcagggaatggaacagcggcaaaagcaaatgatgtcatttcttgcaaaggctatgcatagtcctggctttttatcccagcttgtacagcatcagaatgagagcaacaggcgcatcactggaagcaacaagaaaaggagacttccgaggcaagaagacgaaattttggtggggaagcttagcagtaaaactctggatggacaaattgtgaaataccagccttcaatgaatgaagcagcaaaagcaatgctacggcagattatgaagatgaatatatctcctaggcgagaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

233

Amino Acids

26.58

Weight (kDa)

10.12

Isoelectric Point (pI)

66.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02990 AT5G16820 AT5G16820
fragaria_vesca	FvH4_3g16090
malus_domestica	MD05G1213800.v1.1 MD10G1197700.v1.1
prunus_persica	Prupe.4G144200_v2.0.a1 Prupe.4G144200_v2.0.a1
pyrus_communis	pycom05g19750 pycom05g19760 pycom10g17040
rosa_chinensis	RchiOBHm_Chr5g0027071
rosa_laevigata	RLG00000032987
rosa_multiflora	Rmu_sc0000882.1_g000025 Rmu_sc0020624.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052420 Rroxscaffold_3G00251920
rosa_rugosa	Rorug05G0097100
rosa_samantha	Rh5AG190700 Rh5BG188300 Rh5CG208100 Rh5DG190100
rosa_wichuraiana	Rw5G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	427
AcsI	RAATTY	2 cut(s)	128, 570
AfaI	GTAC	3 cut(s)	204, 231, 495
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	3 cut(s)	172, 308, 633
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	3 cut(s)	252, 490, 586
AluI	AGCT	3 cut(s)	252, 490, 586
Alw21I	GWGCWC	1 cut(s)	254
Alw26I	GTCTC	1 cut(s)	541
ApeKI	GCWGC	3 cut(s)	263, 367, 644
ApoI	RAATTY	2 cut(s)	128, 570
Asp700I	GAANNNNTTC	1 cut(s)	144
AspA2I	CCTAGG	1 cut(s)	689
AspLEI	GCGC	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	94
AvrII	CCTAGG	1 cut(s)	689
BanII	GRGCYC	1 cut(s)	254
BbsI	GAAGAC	2 cut(s)	179, 570
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	3 cut(s)	250, 379, 656
BccI	CCATC	2 cut(s)	117, 599
BceAI	ACGGC	1 cut(s)	677
BciT130I	CCWGG	1 cut(s)	474
BcoDI	GTCTC	1 cut(s)	541
BfaI	CTAG	1 cut(s)	690
BisI	GCNGC	4 cut(s)	264, 368, 428, 645
BlnI	CCTAGG	1 cut(s)	689
BlpI	GCTNAGC	1 cut(s)	587
BlsI	GCNGC	4 cut(s)	265, 369, 429, 646
Bme1390I	CCNGG	1 cut(s)	474
BmrFI	CCNGG	1 cut(s)	474
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	508, 531
BmuI	ACTGGG	1 cut(s)	104
BpiI	GAAGAC	2 cut(s)	179, 570
BpmI	CTGGAG	1 cut(s)	314
Bpu1102I	GCTNAGC	1 cut(s)	587
BsaJI	CCNNGG	2 cut(s)	554, 689
Bse1I	ACTGG	5 cut(s)	99, 194, 227, 297, 532
Bse3DI	GCAATG	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	554, 689
BseGI	GGATG	2 cut(s)	112, 610
BseMI	GCAATG	1 cut(s)	660
BseNI	ACTGG	5 cut(s)	99, 194, 227, 297, 532
BseRI	GAGGAG	2 cut(s)	311, 314
BseXI	GCAGC	3 cut(s)	250, 379, 656
BseYI	CCCAGC	1 cut(s)	486
BsgI	GTGCAG	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp1407I	TGTACA	2 cut(s)	202, 493
Bsp143I	GATC	1 cut(s)	84
Bsp1720I	GCTNAGC	1 cut(s)	587
BspACI	CCGC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	660
BsrGI	TGTACA	2 cut(s)	202, 493
BsrI	ACTGG	5 cut(s)	99, 194, 227, 297, 532
BssECI	CCNNGG	2 cut(s)	554, 689
BssMI	GATC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	689
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	178
BstAUI	TGTACA	2 cut(s)	202, 493
BstC8I	GCNNGC	2 cut(s)	268, 372
BstDEI	CTNAG	2 cut(s)	149, 587
BstF5I	GGATG	2 cut(s)	112, 610
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	5 cut(s)	367, 433, 496, 519, 650
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	472
BstV1I	GCAGC	3 cut(s)	250, 379, 656
BstV2I	GAAGAC	2 cut(s)	179, 570
BstXI	CCANNNNNNTGG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	112, 610
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	268, 372
CfoI	GCGC	1 cut(s)	522
Csp6I	GTAC	3 cut(s)	203, 230, 494
CviAII	CATG	1 cut(s)	267
CviQI	GTAC	3 cut(s)	203, 230, 494
DdeI	CTNAG	2 cut(s)	149, 587
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	689
Eco24I	GRGCYC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	252
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	689
EcoT22I	ATGCAT	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	689
FaeI	CATG	1 cut(s)	270
FaiI	YATR	8 cut(s)	11, 57, 268, 338, 464, 468, 671, 683
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	1 cut(s)	266
Fnu4HI	GCNGC	4 cut(s)	264, 368, 428, 645
FokI	GGATG	2 cut(s)	99, 617
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	4 cut(s)	264, 368, 428, 645
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	4 cut(s)	264, 368, 428, 645
GsaI	CCCAGC	1 cut(s)	490
GsuI	CTGGAG	1 cut(s)	314
HhaI	GCGC	1 cut(s)	522
Hin1II	CATG	1 cut(s)	270
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HincII	GTYRAC	1 cut(s)	404
HindII	GTYRAC	1 cut(s)	404
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	1 cut(s)	208
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188I	TCNGA	3 cut(s)	159, 504, 555
Hpy188III	TCNNGA	2 cut(s)	116, 602
Hpy8I	GTNNAC	1 cut(s)	404
HpyAV	CCTTC	2 cut(s)	134, 639
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	5 cut(s)	266, 340, 412, 455, 466
HpyF10VI	GCNNNNNNNGC	5 cut(s)	367, 433, 496, 519, 650
HpyF3I	CTNAG	2 cut(s)	149, 587
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	1 cut(s)	270
HspAI	GCGC	1 cut(s)	520
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	2 cut(s)	257, 364
Lsp1109I	GCAGC	3 cut(s)	250, 379, 656
LweI	GCATC	2 cut(s)	508, 531
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	1 cut(s)	406
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	3 cut(s)	184, 575, 685
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	4 cut(s)	128, 386, 570, 612
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	7 cut(s)	146, 268, 289, 292, 295, 351, 549
Mph1103I	ATGCAT	1 cut(s)	468
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	3 cut(s)	72, 198, 315
MslI	CAYNNNNRTG	2 cut(s)	335, 504
MspA1I	CMGCKG	1 cut(s)	427
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	5 cut(s)	367, 433, 496, 519, 650
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	270
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	1 cut(s)	270
PaeI	GCATGC	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	144
PkrI	GCNGC	4 cut(s)	265, 369, 429, 646
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	472
PspFI	CCCAGC	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	472
RsaI	GTAC	3 cut(s)	204, 231, 495
RsaNI	GTAC	3 cut(s)	203, 230, 494
RseI	CAYNNNNRTG	2 cut(s)	335, 504
SacI	GAGCTC	1 cut(s)	254
SaqAI	TTAA	3 cut(s)	72, 198, 315
SatI	GCNGC	4 cut(s)	264, 368, 428, 645
Sau3AI	GATC	1 cut(s)	84
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	8 cut(s)	157, 241, 254, 279, 306, 409, 492, 588
SfaNI	GCATC	2 cut(s)	508, 531
SmiMI	CAYNNNNRTG	2 cut(s)	335, 504
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	4 cut(s)	128, 386, 570, 612
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	690
SstI	GAGCTC	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	689
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	409
TaqII	GACCGA	1 cut(s)	135
TasI	AATT	4 cut(s)	128, 386, 570, 612
TatI	WGTACW	2 cut(s)	202, 493
TauI	GCSGC	1 cut(s)	430
Tru1I	TTAA	3 cut(s)	72, 198, 315
Tru9I	TTAA	3 cut(s)	72, 198, 315
TscAI	CASTG	1 cut(s)	532
TseI	GCWGC	3 cut(s)	263, 367, 644
TspDTI	ATGAA	7 cut(s)	17, 101, 153, 650, 654, 686, 692
TspRI	CASTG	1 cut(s)	532
XapI	RAATTY	2 cut(s)	128, 570
XceI	RCATGY	1 cut(s)	270
XmaJI	CCTAGG	1 cut(s)	689
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	1 cut(s)	690
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.