AT3G03210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014601
Physical Location & Seq
Forward (+)
740704 .. 742309
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03210.1

Sequence Viewer

Length: 1107 bp
ATGCTAGGAGCGATTCATTTGGGAGTATTAGCAGCTTGTTTCGTCCTCTTCGTTCCCATGGCAATGGCTGGTTGGCATCTGAGCAGGAACAAGATGCTCTTCTTTAGTGGCGCTTTGTTTATTTCTCTCGCGGTTTGTGTTCATCTCACGCCTTATTTCCCTTCCGTTTCCGACATCGTTGCCTCTGTTTCCTCTGTTGTTGTCTACGATCATCGTATCTCTTGTATCAACGAGGTTAATCAGATTGTCTGGGATGTTAAACCGGTACCGAATCCGGAGTCTGTTCGTAGGAACAATGGCTCAACAAAGCTTGATTATTTCGTGAAGAACTGGGATTGGATGAAATCGAGGAAAGTTTTGAGTTGTGAGTTTCAGAAATTGGATAAGTTCGATGTTTCGGATTTGTTGAATGGATCGTGGGTTGTTGTTGCTGGTGATTCTCAGGCGAGATTCGTGGCTTTGTCTTTGTTGAATCTTGTTTTGGGTTCGGATTCCAAGGCTATGGATTCGGTTAGAGGGGATTTGTTTAGGAGACATAGTGATTACAGCATTGTGGTTAAGGAGATTGGGATGAAGCTTGATTTTGTTTGGGCTCCTTATGAGAAAGATTTGGATGATCTTGTGGTATCTTATAAGAAGATGAAAAAGTATCCTGATGTTGTGATCATGGGAACTGGGTTATGGCATATGCTTCATGTGAACAATGCTTCAGATTTTGGTTTTAGGTTGAGGCAATTGAGTAGTCATGTGGAGTCTCTAGTGCCCCTTACGCCAAAGGAGCAAGAAGGAGGTGGGTCGGTCTCCGGTAGATCTGTGCATCTGTTCTGGATTGGGATGCCGGTTTTGATCAACGGGATGTTGAATACGGATGAGAAGAAGGAGAAGATGAGTGATACGGTGTGGCATGAGTATGATAGATCACTCGGGGAGAGTAAGATCTTACGTCAAATGGGTGGTCCTCTTATCTTGCTTGATATCCAGTCGTTTACCTGGAACTGTGGACCGCAATGTACACTTGACGGGATGCATTATGACTCTGCGGTCTATGATGCCGCTGTCCATGTCATGCTCAATGCGTTGCTTATTGAATCTCATCAATCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

368

Amino Acids

41.34

Weight (kDa)

6.35

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03210
fragaria_vesca FvH4_1g27360
malus_domestica MD09G1279600.v1.1
prunus_persica Prupe.3G014700_v2.0.a1
pyrus_communis pycom09g18770
rosa_chinensis RchiOBHm_Chr3g0488741
rosa_laevigata RLG00000022925
rosa_multiflora Rmu_sc0000265.1_g000016 Rmu_sc0001208.1_g000071 Rmu_sc0001208.1_g000072
rosa_roxburghii Rroxscaffold_6G00393910
rosa_rugosa Rorug03G0241200
rosa_samantha Rh3AG289500 Rh3BG326500 Rh3CG324000 Rh3DG322400
rosa_wichuraiana Rw3G025630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 633
AasI GACNNNNNNGTC 1 cut(s) 1040
Acc65I GGTACC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 265
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 131
AccIII TCCGGA 1 cut(s) 274
AciI CCGC 4 cut(s) 131, 1004, 1040, 1053
AclWI GGATC 1 cut(s) 421
AcuI CTGAAG 1 cut(s) 693
AfaI GTAC 2 cut(s) 267, 1012
AgeI ACCGGT 1 cut(s) 262
AgsI TTSAA 4 cut(s) 409, 472, 862, 1088
AjnI CCWGG 1 cut(s) 989
AjuI GAANNNNNNNTTGG 2 cut(s) 464, 496
AluBI AGCT 3 cut(s) 35, 310, 577
AluI AGCT 3 cut(s) 35, 310, 577
Alw26I GTCTC 3 cut(s) 526, 759, 805
AlwI GGATC 1 cut(s) 421
Ama87I CYCGRG 1 cut(s) 923
Aor13HI TCCGGA 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 32
ArsI GACNNNNNNTTYG 4 cut(s) 263, 295, 940, 972
AsiGI ACCGGT 1 cut(s) 262
Asp718I GGTACC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 956, 1001
AsuHPI GGTGA 1 cut(s) 446
AvaI CYCGRG 1 cut(s) 923
AvaII GGWCC 2 cut(s) 956, 1001
BaeGI GKGCMC 1 cut(s) 765
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 595
BbvI GCAGC 1 cut(s) 44
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 1 cut(s) 991
BciVI GTATCC 1 cut(s) 660
BclI TGATCA 2 cut(s) 663, 846
BcoDI GTCTC 3 cut(s) 526, 759, 805
BfaI CTAG 2 cut(s) 5, 758
BfoI RGCGCY 1 cut(s) 114
BfuI GTATCC 1 cut(s) 660
BglII AGATCT 2 cut(s) 809, 936
BisI GCNGC 2 cut(s) 33, 1053
BlsI GCNGC 2 cut(s) 34, 1054
Bme1390I CCNGG 1 cut(s) 991
Bme18I GGWCC 2 cut(s) 956, 1001
BmeT110I CYCGRG 1 cut(s) 923
BmgT120I GGNCC 2 cut(s) 956, 1001
BmiI GGNNCC 2 cut(s) 267, 594
BmrFI CCNGG 1 cut(s) 991
BmrI ACTGGG 2 cut(s) 340, 684
BmsI GCATC 6 cut(s) 84, 85, 825, 826, 1014, 1039
BmuI ACTGGG 2 cut(s) 340, 684
BsaI GGTCTC 1 cut(s) 805
BsaJI CCNNGG 2 cut(s) 57, 495
BsaWI WCCGGW 3 cut(s) 262, 274, 803
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bse118I RCCGGY 2 cut(s) 262, 838
Bse1I ACTGG 3 cut(s) 335, 679, 979
Bse3DI GCAATG 2 cut(s) 69, 1013
BseAI TCCGGA 1 cut(s) 274
BseBI CCWGG 1 cut(s) 991
BseDI CCNNGG 2 cut(s) 57, 495
BseGI GGATG 8 cut(s) 259, 345, 576, 619, 840, 861, 874, 1029
BseMI GCAATG 2 cut(s) 69, 1013
BseMII CTCAG 2 cut(s) 71, 455
BseNI ACTGG 3 cut(s) 335, 679, 979
BseSI GKGCMC 1 cut(s) 765
BseXI GCAGC 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 265
BshTI ACCGGT 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 923
BsiSI CCGG 4 cut(s) 263, 275, 804, 839
BsmAI GTCTC 3 cut(s) 526, 759, 805
Bso31I GGTCTC 1 cut(s) 805
BsoBI CYCGRG 1 cut(s) 923
Bsp1286I GDGCHC 2 cut(s) 595, 765
Bsp13I TCCGGA 1 cut(s) 274
Bsp1407I TGTACA 1 cut(s) 1010
Bsp143I GATC 8 cut(s) 208, 413, 616, 663, 809, 846, 917, 936
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 4 cut(s) 131, 1004, 1040, 1053
BspCNI CTCAG 2 cut(s) 72, 454
BspEI TCCGGA 1 cut(s) 274
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 267, 594
BspPI GGATC 1 cut(s) 421
BspQI GCTCTTC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 805
BsrDI GCAATG 2 cut(s) 69, 1013
BsrFI RCCGGY 2 cut(s) 262, 838
BsrGI TGTACA 1 cut(s) 1010
BsrI ACTGG 3 cut(s) 335, 679, 979
BssAI RCCGGY 2 cut(s) 262, 838
BssECI CCNNGG 2 cut(s) 57, 495
BssMI GATC 8 cut(s) 208, 413, 616, 663, 809, 846, 917, 936
BssT1I CCWWGG 2 cut(s) 57, 495
Bst2UI CCWGG 1 cut(s) 991
Bst4CI ACNGT 2 cut(s) 898, 998
Bst6I CTCTTC 2 cut(s) 53, 104
BstAUI TGTACA 1 cut(s) 1010
BstDEI CTNAG 2 cut(s) 80, 441
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 8 cut(s) 259, 345, 576, 619, 840, 861, 874, 1029
BstFNI CGCG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 8 cut(s) 211, 416, 619, 666, 812, 849, 920, 939
BstMAI GTCTC 3 cut(s) 526, 759, 805
BstMBI GATC 8 cut(s) 208, 413, 616, 663, 809, 846, 917, 936
BstMWI GCNNNNNNNGC 2 cut(s) 769, 778
BstNI CCWGG 1 cut(s) 991
BstSCI CCNGG 1 cut(s) 989
BstSLI GKGCMC 1 cut(s) 765
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 44
BstX2I RGATCY 2 cut(s) 809, 936
BstXI CCANNNNNNTGG 2 cut(s) 64, 502
BstYI RGATCY 2 cut(s) 809, 936
BsuI GTATCC 1 cut(s) 660
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 8 cut(s) 259, 345, 576, 619, 840, 861, 874, 1029
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 2 cut(s) 262, 838
Cfr13I GGNCC 2 cut(s) 956, 1001
Csp6I GTAC 2 cut(s) 266, 1011
CspAI ACCGGT 1 cut(s) 262
CviAII CATG 7 cut(s) 58, 667, 695, 746, 905, 1061, 1066
CviJI RGCY 8 cut(s) 35, 68, 300, 310, 458, 500, 577, 593
CviKI_1 RGCY 8 cut(s) 35, 68, 300, 310, 458, 500, 577, 593
CviQI GTAC 2 cut(s) 266, 1011
DdeI CTNAG 2 cut(s) 80, 441
DpnI GATC 8 cut(s) 210, 415, 618, 665, 811, 848, 919, 938
DpnII GATC 8 cut(s) 208, 413, 616, 663, 809, 846, 917, 936
DrdI GACNNNNNNGTC 1 cut(s) 1040
DseDI GACNNNNNNGTC 1 cut(s) 1040
Eam1104I CTCTTC 2 cut(s) 53, 104
EarI CTCTTC 2 cut(s) 53, 104
Eco130I CCWWGG 2 cut(s) 57, 495
Eco24I GRGCYC 1 cut(s) 595
Eco31I GGTCTC 1 cut(s) 805
Eco32I GATATC 1 cut(s) 976
Eco47I GGWCC 2 cut(s) 956, 1001
Eco57I CTGAAG 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 923
EcoRII CCWGG 1 cut(s) 989
EcoRV GATATC 1 cut(s) 976
EcoT14I CCWWGG 2 cut(s) 57, 495
EcoT22I ATGCAT 1 cut(s) 1029
EcoT38I GRGCYC 1 cut(s) 595
ErhI CCWWGG 2 cut(s) 57, 495
FaeI CATG 7 cut(s) 61, 670, 698, 749, 908, 1064, 1069
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FatI CATG 7 cut(s) 57, 666, 694, 745, 904, 1060, 1065
FauNDI CATATG 1 cut(s) 687
FbaI TGATCA 2 cut(s) 663, 846
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 33, 1053
FokI GGATG 8 cut(s) 266, 352, 583, 626, 847, 868, 881, 1036
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 2 cut(s) 33, 1053
FspBI CTAG 2 cut(s) 5, 758
GlaI GCGC 1 cut(s) 112
GluI GCNGC 2 cut(s) 33, 1053
HaeII RGCGCY 1 cut(s) 114
HapII CCGG 4 cut(s) 263, 275, 804, 839
HhaI GCGC 1 cut(s) 113
Hin1II CATG 7 cut(s) 61, 670, 698, 749, 908, 1064, 1069
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HindIII AAGCTT 2 cut(s) 308, 575
HpaII CCGG 4 cut(s) 263, 275, 804, 839
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 5 cut(s) 205, 700, 987, 1001, 1013
Hpy188I TCNGA 7 cut(s) 81, 172, 243, 375, 400, 490, 712
Hpy188III TCNNGA 4 cut(s) 275, 322, 653, 826
Hpy8I GTNNAC 5 cut(s) 205, 700, 987, 1001, 1013
HpyAV CCTTC 3 cut(s) 171, 779, 871
HpyCH4III ACNGT 2 cut(s) 898, 998
HpyCH4IV ACGT 1 cut(s) 943
HpyCH4V TGCA 2 cut(s) 817, 1027
HpyF10VI GCNNNNNNNGC 2 cut(s) 769, 778
HpyF3I CTNAG 2 cut(s) 80, 441
HpySE526I ACGT 1 cut(s) 943
Hsp92II CATG 7 cut(s) 61, 670, 698, 749, 908, 1064, 1069
HspAI GCGC 1 cut(s) 111
Kpn2I TCCGGA 1 cut(s) 274
KpnI GGTACC 1 cut(s) 269
Ksp22I TGATCA 2 cut(s) 663, 846
Kzo9I GATC 8 cut(s) 208, 413, 616, 663, 809, 846, 917, 936
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 3 cut(s) 8, 598, 778
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 6 cut(s) 84, 85, 825, 826, 1014, 1039
MaeI CTAG 2 cut(s) 5, 758
MaeII ACGT 1 cut(s) 943
MalI GATC 8 cut(s) 210, 415, 618, 665, 811, 848, 919, 938
MboI GATC 8 cut(s) 208, 413, 616, 663, 809, 846, 917, 936
MboII GAAGA 6 cut(s) 40, 91, 337, 649, 886, 895
MfeI CAATTG 1 cut(s) 734
MflI RGATCY 2 cut(s) 809, 936
MhlI GDGCHC 2 cut(s) 595, 765
MluCI AATT 2 cut(s) 377, 734
MlyI GAGTC 3 cut(s) 287, 761, 1028
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 9 cut(s) 56, 193, 202, 226, 342, 509, 723, 782, 969
Mph1103I ATGCAT 1 cut(s) 1029
MroI TCCGGA 1 cut(s) 274
MseI TTAA 3 cut(s) 237, 258, 558
MslI CAYNNNNRTG 2 cut(s) 62, 909
MspA1I CMGCKG 1 cut(s) 1055
MspI CCGG 4 cut(s) 263, 275, 804, 839
MspR9I CCNGG 1 cut(s) 991
MunI CAATTG 1 cut(s) 734
MvaI CCWGG 1 cut(s) 991
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 769, 778
NcoI CCATGG 1 cut(s) 57
NdeI CATATG 1 cut(s) 687
NdeII GATC 8 cut(s) 208, 413, 616, 663, 809, 846, 917, 936
NlaIII CATG 7 cut(s) 61, 670, 698, 749, 908, 1064, 1069
NlaIV GGNNCC 2 cut(s) 267, 594
NsiI ATGCAT 1 cut(s) 1029
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 8 cut(s) 13, 271, 437, 450, 472, 491, 506, 1088
PinAI ACCGGT 1 cut(s) 262
PkrI GCNGC 2 cut(s) 34, 1054
PleI GAGTC 3 cut(s) 286, 760, 1028
PpsI GAGTC 3 cut(s) 286, 760, 1028
PsiI TTATAA 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 989
PspGI CCWGG 1 cut(s) 989
PspN4I GGNNCC 2 cut(s) 267, 594
PspPI GGNCC 2 cut(s) 956, 1001
PsuI RGATCY 2 cut(s) 809, 936
RsaI GTAC 2 cut(s) 267, 1012
RsaNI GTAC 2 cut(s) 266, 1011
RseI CAYNNNNRTG 2 cut(s) 62, 909
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 3 cut(s) 237, 258, 558
SatI GCNGC 2 cut(s) 33, 1053
Sau3AI GATC 8 cut(s) 208, 413, 616, 663, 809, 846, 917, 936
Sau96I GGNCC 2 cut(s) 956, 1001
SchI GAGTC 3 cut(s) 287, 761, 1028
ScrFI CCNGG 1 cut(s) 991
SduI GDGCHC 2 cut(s) 595, 765
SetI ASST 8 cut(s) 37, 237, 312, 579, 728, 793, 946, 992
SfaNI GCATC 6 cut(s) 84, 85, 825, 826, 1014, 1039
SinI GGWCC 2 cut(s) 956, 1001
SmiMI CAYNNNNRTG 2 cut(s) 62, 909
Sse9I AATT 2 cut(s) 377, 734
SsiI CCGC 4 cut(s) 131, 1004, 1040, 1053
SspMI CTAG 2 cut(s) 5, 758
StyD4I CCNGG 1 cut(s) 989
StyI CCWWGG 2 cut(s) 57, 495
TaaI ACNGT 2 cut(s) 898, 998
TaiI ACGT 1 cut(s) 946
TaqI TCGA 2 cut(s) 347, 390
TaqII GACCGA 1 cut(s) 787
TasI AATT 2 cut(s) 377, 734
TatI WGTACW 1 cut(s) 1010
TauI GCSGC 1 cut(s) 1055
TfiI GAWTC 8 cut(s) 13, 271, 437, 450, 472, 491, 506, 1088
Tru1I TTAA 3 cut(s) 237, 258, 558
Tru9I TTAA 3 cut(s) 237, 258, 558
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 6 cut(s) 5, 131, 356, 587, 656, 683
TspGWI ACGGA 2 cut(s) 154, 881
VpaK11BI GGWCC 2 cut(s) 956, 1001
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 2 cut(s) 5, 758
Zsp2I ATGCAT 1 cut(s) 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.