RLG00000022925

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
15258044 .. 15259123
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022925

Sequence Viewer

Length: 1080 bp
ATGATCGGAGCAGTTCAGTTGGGAGTGTTGGCGGCTTGCGTTGTGGTTTTAGTTCCGATGGGCATGGCCGGTTATCATCTCAGCCGCAACAAGATGCTCTTCTTCAGCGGCGCCCTCTTCATCACTCTCGCCATCGGCGTCCACCTCACCCCTTACTTCCCTTCCGTCACCGACTTCGTCACCACCGTCTCCTCCGTCGTCGTTTTCCAGAACCGCCGCGACTCCTGCCTCTCCCACCTCCACGACCTCGTCTGGGACGTCTCTCCCTCCCCCGATTCCCCGCTCGATTTCCACAAGTCCTGGGCTTGGGACGCTTCCTCCTCCTCCGTCTCCGCCTGCGGCTTCCAGAAGCTCGGCCGCTTCGACGCCGCCGATCTCCTCAACGGATCTTGGGTCGTCGTCGCCGGCGACTCCCAGGCCAGGCTCGTCGCCGTCTCGCTCCTCGCTCTGGTTCTCGATTCGGACCGCATGGACCAGGTCCGGGGTGACCTCTTCAAGCGCCACAGTGATTATCAGATTGTGGTTGATGAGATTGGGATGAGGTTAGACTTCTTCTGGGCCCCTTTTGCTCTCAATTTGACCACTCTCGTCGCCGGTTTCAACCGAAATCGAAACTACCCAGATGTCTTGGTCATGGGCTCTGGTTTGTGGCACATGCTTCATTTCACTAATGCGTCCGATTACGGTGCTTCTTTGCAATCGCTGAGGTCTCACGCTGCTTCTCTCGTCTCGTCGTCTGAGCAGCATCAAGAAGCAGTGACAGGCTCCGTGCTGGCCAGGCCTTCGCCGCATCTCTTCTGGATTGGGATGCCCACTCTGATCAACTCAATGCTGAATTCGGATGAGAAGAGGGAGAAGATGACTGATGTCTTGAGGGCTGCCTATGACGAGCAGCTTCGAAACAGTAATCTTGTGCGCAAGTCGAATGGACCCTTTTTGCTGTTGGATGTTGAGTCCTTGAGCTGGAATTGTGGGGTGAGATGTACGGTGGATGGAATGCACTATGATATGATAGTTTATGAAGCGGCACTTCATATCATGCTAAATGCATTGCTCATTGAATCTCATCAGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

360

Amino Acids

39.74

Weight (kDa)

5.92

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014601)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
Acc16I TGCGCA 1 cut(s) 917
AccB1I GGYRCC 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 283
AccII CGCG 1 cut(s) 219
AclWI GGATC 1 cut(s) 394
AcoI YGGCCR 3 cut(s) 66, 355, 774
AcsI RAATTY 1 cut(s) 835
AcuI CTGAAG 1 cut(s) 88
AcyI GRCGYC 4 cut(s) 111, 138, 258, 366
AfaI GTAC 1 cut(s) 985
AfiI CCNNNNNNNGG 6 cut(s) 253, 306, 420, 448, 481, 963
AgsI TTSAA 3 cut(s) 496, 601, 1061
AjnI CCWGG 5 cut(s) 299, 414, 419, 474, 776
AluBI AGCT 4 cut(s) 352, 895, 963, 1075
AluI AGCT 4 cut(s) 352, 895, 963, 1075
Alw26I GTCTC 6 cut(s) 193, 265, 334, 439, 714, 733
AlwI GGATC 1 cut(s) 394
AoxI GGCC 6 cut(s) 66, 355, 417, 558, 774, 779
ApaI GGGCCC 1 cut(s) 562
ApeKI GCWGC 4 cut(s) 716, 742, 878, 892
ApoI RAATTY 1 cut(s) 835
AspLEI GCGC 3 cut(s) 113, 501, 918
AspS9I GGNCC 6 cut(s) 463, 472, 478, 558, 559, 929
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 5 cut(s) 139, 160, 172, 497, 988
AsuII TTCGAA 1 cut(s) 898
AvaII GGWCC 4 cut(s) 463, 472, 478, 929
BaeGI GKGCMC 1 cut(s) 562
BalI TGGCCA 1 cut(s) 776
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 2 cut(s) 562, 641
BbvCI CCTCAGC 1 cut(s) 704
BbvI GCAGC 4 cut(s) 703, 754, 865, 904
BccI CCATC 3 cut(s) 52, 140, 986
BceAI ACGGC 1 cut(s) 416
BcgI CGANNNNNNTGC 2 cut(s) 668, 702
BciT130I CCWGG 5 cut(s) 301, 416, 421, 476, 778
BclI TGATCA 1 cut(s) 819
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 6 cut(s) 193, 265, 334, 439, 714, 733
BfoI RGCGCY 2 cut(s) 114, 502
Bme1390I CCNGG 6 cut(s) 301, 416, 421, 476, 482, 778
Bme18I GGWCC 4 cut(s) 463, 472, 478, 929
BmgT120I GGNCC 6 cut(s) 463, 472, 478, 558, 559, 929
BmiI GGNNCC 5 cut(s) 112, 560, 561, 766, 931
BmrFI CCNGG 6 cut(s) 301, 416, 421, 476, 482, 778
BmsI GCATC 4 cut(s) 84, 754, 798, 799
BoxI GACNNNNGTC 1 cut(s) 866
Bpu10I CCTNAGC 1 cut(s) 704
Bpu14I TTCGAA 1 cut(s) 898
BpuEI CTTGAG 2 cut(s) 892, 979
BpuMI CCSGG 1 cut(s) 482
BsaHI GRCGYC 4 cut(s) 111, 138, 258, 366
BsaI GGTCTC 1 cut(s) 714
BsaJI CCNNGG 3 cut(s) 300, 414, 481
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 6 cut(s) 253, 306, 420, 448, 481, 963
Bse118I RCCGGY 3 cut(s) 68, 404, 593
Bse3DI GCAATG 1 cut(s) 1049
BseBI CCWGG 5 cut(s) 301, 416, 421, 476, 778
BseDI CCNNGG 3 cut(s) 300, 414, 481
BseGI GGATG 5 cut(s) 543, 813, 847, 952, 997
BseLI CCNNNNNNNGG 6 cut(s) 253, 306, 420, 448, 481, 963
BseMI GCAATG 1 cut(s) 1049
BseMII CTCAG 3 cut(s) 94, 695, 729
BseRI GAGGAG 5 cut(s) 181, 310, 313, 368, 431
BseSI GKGCMC 1 cut(s) 562
BseX3I CGGCCG 1 cut(s) 355
BseXI GCAGC 4 cut(s) 703, 754, 865, 904
Bsh1236I CGCG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 358
BshFI GGCC 6 cut(s) 68, 357, 419, 560, 776, 781
BshNI GGYRCC 1 cut(s) 110
BsiEI CGRYCG 1 cut(s) 358
BsiSI CCGG 4 cut(s) 69, 405, 481, 594
BslFI GGGAC 2 cut(s) 269, 323
BslI CCNNNNNNNGG 6 cut(s) 253, 306, 420, 448, 481, 963
BsmAI GTCTC 6 cut(s) 193, 265, 334, 439, 714, 733
BsmBI CGTCTC 5 cut(s) 193, 265, 334, 439, 733
BsmFI GGGAC 2 cut(s) 269, 323
BsmI GAATGC 1 cut(s) 1002
BsnI GGCC 6 cut(s) 68, 357, 419, 560, 776, 781
Bso31I GGTCTC 1 cut(s) 714
Bsp119I TTCGAA 1 cut(s) 898
Bsp120I GGGCCC 1 cut(s) 558
Bsp1286I GDGCHC 2 cut(s) 562, 641
Bsp143I GATC 4 cut(s) 3, 373, 386, 819
BspANI GGCC 6 cut(s) 68, 357, 419, 560, 776, 781
BspCNI CTCAG 3 cut(s) 93, 696, 730
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 5 cut(s) 112, 560, 561, 766, 931
BspPI GGATC 1 cut(s) 394
BspQI GCTCTTC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 898
BspT107I GGYRCC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 714
BsrBI CCGCTC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 1049
BsrFI RCCGGY 3 cut(s) 68, 404, 593
BssAI RCCGGY 3 cut(s) 68, 404, 593
BssECI CCNNGG 3 cut(s) 300, 414, 481
BssMI GATC 4 cut(s) 3, 373, 386, 819
BssNI GRCGYC 4 cut(s) 111, 138, 258, 366
Bst2UI CCWGG 5 cut(s) 301, 416, 421, 476, 778
Bst4CI ACNGT 5 cut(s) 187, 506, 686, 905, 988
Bst6I CTCTTC 5 cut(s) 104, 122, 497, 800, 842
BstACI GRCGYC 4 cut(s) 111, 138, 258, 366
BstBI TTCGAA 1 cut(s) 898
BstC8I GCNNGC 4 cut(s) 37, 337, 406, 774
BstDEI CTNAG 3 cut(s) 80, 704, 738
BstEII GGTNACC 1 cut(s) 485
BstF5I GGATG 5 cut(s) 543, 813, 847, 952, 997
BstFNI CGCG 1 cut(s) 219
BstH2I RGCGCY 2 cut(s) 114, 502
BstHHI GCGC 3 cut(s) 113, 501, 918
BstKTI GATC 4 cut(s) 6, 376, 389, 822
BstMAI GTCTC 6 cut(s) 193, 265, 334, 439, 714, 733
BstMBI GATC 4 cut(s) 3, 373, 386, 819
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 5 cut(s) 225, 311, 566, 778, 787
BstNI CCWGG 5 cut(s) 301, 416, 421, 476, 778
BstNSI RCATGY 1 cut(s) 658
BstPAI GACNNNNGTC 1 cut(s) 866
BstPI GGTNACC 1 cut(s) 485
BstSCI CCNGG 6 cut(s) 299, 414, 419, 474, 480, 776
BstSLI GKGCMC 1 cut(s) 562
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 4 cut(s) 703, 754, 865, 904
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BstZI CGGCCG 1 cut(s) 355
BsuRI GGCC 6 cut(s) 68, 357, 419, 560, 776, 781
BtsCI GGATG 5 cut(s) 543, 813, 847, 952, 997
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 2 cut(s) 511, 762
Cac8I GCNNGC 4 cut(s) 37, 337, 406, 774
CfoI GCGC 3 cut(s) 113, 501, 918
Cfr10I RCCGGY 3 cut(s) 68, 404, 593
Cfr13I GGNCC 6 cut(s) 463, 472, 478, 558, 559, 929
CpoI CGGWCCG 1 cut(s) 463
CseI GACGC 4 cut(s) 127, 320, 374, 663
CsiI ACCWGGT 1 cut(s) 474
Csp6I GTAC 1 cut(s) 984
CspI CGGWCCG 1 cut(s) 463
CviAII CATG 5 cut(s) 64, 469, 634, 655, 1039
CviQI GTAC 1 cut(s) 984
DdeI CTNAG 3 cut(s) 80, 704, 738
DinI GGCGCC 1 cut(s) 112
DpnI GATC 4 cut(s) 5, 375, 388, 821
DpnII GATC 4 cut(s) 3, 373, 386, 819
EaeI YGGCCR 3 cut(s) 66, 355, 774
EagI CGGCCG 1 cut(s) 355
Eam1104I CTCTTC 5 cut(s) 104, 122, 497, 800, 842
EarI CTCTTC 5 cut(s) 104, 122, 497, 800, 842
EciI GGCGGA 1 cut(s) 322
EclXI CGGCCG 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 781
Eco24I GRGCYC 2 cut(s) 562, 641
Eco31I GGTCTC 1 cut(s) 714
Eco47I GGWCC 4 cut(s) 463, 472, 478, 929
Eco52I CGGCCG 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 88
Eco91I GGTNACC 1 cut(s) 485
EcoO109I RGGNCCY 1 cut(s) 559
EcoO65I GGTNACC 1 cut(s) 485
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 5 cut(s) 299, 414, 419, 474, 776
EcoT22I ATGCAT 1 cut(s) 1051
EcoT38I GRGCYC 2 cut(s) 562, 641
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
Esp3I CGTCTC 5 cut(s) 193, 265, 334, 439, 733
FaeI CATG 5 cut(s) 67, 472, 637, 658, 1042
FalI AAGNNNNNCTT 4 cut(s) 83, 115, 1014, 1046
FaqI GGGAC 2 cut(s) 269, 323
FatI CATG 5 cut(s) 63, 468, 633, 654, 1038
FauI CCCGC 1 cut(s) 288
FbaI TGATCA 1 cut(s) 819
FokI GGATG 5 cut(s) 550, 820, 854, 959, 1004
FriOI GRGCYC 2 cut(s) 562, 641
FspI TGCGCA 1 cut(s) 917
GlaI GCGC 3 cut(s) 112, 500, 917
HaeII RGCGCY 2 cut(s) 114, 502
HaeIII GGCC 6 cut(s) 68, 357, 419, 560, 776, 781
HapII CCGG 4 cut(s) 69, 405, 481, 594
HgaI GACGC 4 cut(s) 127, 320, 374, 663
HhaI GCGC 3 cut(s) 113, 501, 918
Hin1I GRCGYC 4 cut(s) 111, 138, 258, 366
Hin1II CATG 5 cut(s) 67, 472, 637, 658, 1042
Hin6I GCGC 3 cut(s) 111, 499, 916
HinP1I GCGC 3 cut(s) 111, 499, 916
HindIII AAGCTT 1 cut(s) 1073
HinfI GANTC 6 cut(s) 221, 275, 410, 458, 953, 1061
HpaII CCGG 4 cut(s) 69, 405, 481, 594
HphI GGTGA 5 cut(s) 139, 160, 172, 497, 988
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 9 cut(s) 8, 57, 463, 516, 679, 739, 819, 841, 1071
Hpy188III TCNNGA 6 cut(s) 208, 346, 455, 749, 799, 871
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 8 cut(s) 200, 203, 368, 401, 404, 431, 593, 736
HpyAV CCTTC 2 cut(s) 171, 792
HpyCH4III ACNGT 5 cut(s) 187, 506, 686, 905, 988
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 697, 1000, 1049
HpyF10VI GCNNNNNNNGC 5 cut(s) 225, 311, 566, 778, 787
HpyF3I CTNAG 3 cut(s) 80, 704, 738
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 4 cut(s) 111, 138, 258, 366
Hsp92II CATG 5 cut(s) 67, 472, 637, 658, 1042
HspAI GCGC 3 cut(s) 111, 499, 916
KasI GGCGCC 1 cut(s) 110
KroI GCCGGC 1 cut(s) 404
KroNI GCCGGC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 819
Kzo9I GATC 4 cut(s) 3, 373, 386, 819
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 3 cut(s) 8, 444, 770
Lsp1109I GCAGC 4 cut(s) 703, 754, 865, 904
LweI GCATC 4 cut(s) 84, 754, 798, 799
MabI ACCWGGT 1 cut(s) 474
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 4 cut(s) 166, 178, 485, 757
MalI GATC 4 cut(s) 5, 375, 388, 821
MbiI CCGCTC 1 cut(s) 283
MboI GATC 4 cut(s) 3, 373, 386, 819
MboII GAAGA 8 cut(s) 91, 94, 109, 484, 544, 787, 859, 868
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 2 cut(s) 562, 641
MlsI TGGCCA 1 cut(s) 776
MluCI AATT 3 cut(s) 574, 835, 967
MluNI TGGCCA 1 cut(s) 776
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 3 cut(s) 215, 404, 962
MmeI TCCRAC 1 cut(s) 924
Mox20I TGGCCA 1 cut(s) 776
Mph1103I ATGCAT 1 cut(s) 1051
MreI CGCCGGCG 1 cut(s) 404
MroNI GCCGGC 1 cut(s) 404
MscI TGGCCA 1 cut(s) 776
Msp20I TGGCCA 1 cut(s) 776
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 4 cut(s) 69, 405, 481, 594
MspR9I CCNGG 6 cut(s) 301, 416, 421, 476, 482, 778
Mva1269I GAATGC 1 cut(s) 1002
MvaI CCWGG 5 cut(s) 301, 416, 421, 476, 778
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 5 cut(s) 225, 311, 566, 778, 787
NaeI GCCGGC 1 cut(s) 406
NarI GGCGCC 1 cut(s) 111
NciI CCSGG 1 cut(s) 482
NdeII GATC 4 cut(s) 3, 373, 386, 819
NgoMIV GCCGGC 1 cut(s) 404
NlaIII CATG 5 cut(s) 67, 472, 637, 658, 1042
NlaIV GGNNCC 5 cut(s) 112, 560, 561, 766, 931
NmeAIII GCCGAG 1 cut(s) 333
NmuCI GTSAC 4 cut(s) 166, 178, 485, 757
NsbI TGCGCA 1 cut(s) 917
NsiI ATGCAT 1 cut(s) 1051
NspI RCATGY 1 cut(s) 658
NspV TTCGAA 1 cut(s) 898
PceI AGGCCT 1 cut(s) 781
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 6 cut(s) 135, 183, 255, 360, 369, 405
PctI GAATGC 1 cut(s) 1002
PdiI GCCGGC 1 cut(s) 406
PfeI GAWTC 3 cut(s) 275, 458, 1061
PflFI GACNNNGTC 3 cut(s) 176, 248, 476
PleI GAGTC 3 cut(s) 215, 404, 961
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 3 cut(s) 215, 404, 961
PshAI GACNNNNGTC 1 cut(s) 866
Psp6I CCWGG 5 cut(s) 299, 414, 419, 474, 776
PspEI GGTNACC 1 cut(s) 485
PspGI CCWGG 5 cut(s) 299, 414, 419, 474, 776
PspN4I GGNNCC 5 cut(s) 112, 560, 561, 766, 931
PspOMI GGGCCC 1 cut(s) 558
PspPI GGNCC 6 cut(s) 463, 472, 478, 558, 559, 929
PsuI RGATCY 1 cut(s) 386
PsyI GACNNNGTC 3 cut(s) 176, 248, 476
RsaI GTAC 1 cut(s) 985
RsaNI GTAC 1 cut(s) 984
Rsr2I CGGWCCG 1 cut(s) 463
RsrII CGGWCCG 1 cut(s) 463
SapI GCTCTTC 1 cut(s) 104
Sau3AI GATC 4 cut(s) 3, 373, 386, 819
Sau96I GGNCC 6 cut(s) 463, 472, 478, 558, 559, 929
SchI GAGTC 3 cut(s) 215, 404, 962
ScrFI CCNGG 6 cut(s) 301, 416, 421, 476, 482, 778
SduI GDGCHC 2 cut(s) 562, 641
SexAI ACCWGGT 1 cut(s) 474
SfaNI GCATC 4 cut(s) 84, 754, 798, 799
SfoI GGCGCC 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 898
SgrAI CRCCGGYG 1 cut(s) 404
SinI GGWCC 4 cut(s) 463, 472, 478, 929
SmlI CTYRAG 2 cut(s) 871, 958
SmoI CTYRAG 2 cut(s) 871, 958
Sse9I AATT 3 cut(s) 574, 835, 967
SseBI AGGCCT 1 cut(s) 781
SspDI GGCGCC 1 cut(s) 110
StuI AGGCCT 1 cut(s) 781
StyD4I CCNGG 6 cut(s) 299, 414, 419, 474, 480, 776
TaaI ACNGT 5 cut(s) 187, 506, 686, 905, 988
TaiI ACGT 1 cut(s) 261
TaqI TCGA 6 cut(s) 285, 363, 456, 610, 898, 923
TasI AATT 3 cut(s) 574, 835, 967
TauI GCSGC 9 cut(s) 35, 87, 111, 219, 342, 360, 371, 790, 1028
TfiI GAWTC 3 cut(s) 275, 458, 1061
TscAI CASTG 2 cut(s) 511, 762
TseFI GTSAC 4 cut(s) 166, 178, 485, 757
TseI GCWGC 4 cut(s) 716, 742, 878, 892
Tsp45I GTSAC 4 cut(s) 166, 178, 485, 757
TspDTI ATGAA 4 cut(s) 109, 650, 1022, 1035
TspGWI ACGGA 5 cut(s) 154, 184, 316, 399, 757
TspRI CASTG 2 cut(s) 511, 762
Tth111I GACNNNGTC 3 cut(s) 176, 248, 476
VpaK11BI GGWCC 4 cut(s) 463, 472, 478, 929
XapI RAATTY 1 cut(s) 835
XceI RCATGY 1 cut(s) 658
ZraI GACGTC 1 cut(s) 259
Zsp2I ATGCAT 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.