Rroxscaffold_6G00393910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014601
Physical Location & Seq
Forward (+)
14247325 .. 14248290
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393910.1

Sequence Viewer

Length: 966 bp
ATGATCGGAGCAGTTCAATTGGGAGTGTTGGCGGCTTGCGTTGTGGTTTTAGTTCCGATGGGAATGGCCGGTTATCATCTCAGCCGCAACAAGATGCTCTTCTTCAGCGGCGCCCTCTTCATCACTCTCGCCATCGGCGTCCACCTCACCCCTTACTTCCCTTCCGTCACCGACTTCGTCACCACCGTCTCCTCCGTCGTCGTTTTCCACAACCGCCGCGACTCCTGCCTCTCCCACCTCCACGACCTCGTCTGGGACGTCTCTCCCTCCCCGGATTCCCCCCTCGATTTCCACAAGTCCTGGGCCTGGGACGACGCTTCCTCCTCCTCCTCCGTCTCCGCCTGCGGCTTCCAGAAGCTCGGCCGATTCGACGCCGCCGATCTCCTCAACGGATCTTGGGTCGTCGTCGCCGGCGACTCCCAGGCCAGGCTCGTCGCCGTCTCGCTCCTCGCTCTCGTTCTCGATTCCGACCGGATGGACCAGGTCCGGGGTGACCTGTTCAAGCGCCACAGTGATTATCAGATTGTGGTGGATGAGATTGGGATGAGGTTGGACTTCTTCTGGGCCCCTTATGCTCTCAATTTGACCACTCTCGTTGCCGGCTTCAACCGAAATCGAAACTACCCAGATGTCCTGGTCATGGGCTCTGGTTTGTGGCACATGCTTCATTTCACTAATGCGTCCGATTTCGGTGCTTCGTTGCAATCCCTAAGGGCTCATGCTGCTTCTCTGGTCTCGTCGTCTGAGCAGCATCAAGAAGCAGCGACAGGGTCCGTGCTGGCCAGACCTTCGCCGCATCTCTTCTGGATTGGGATGCCCACTCTGATCAACTCAATGCTGAATTCGGATGAGAAGAGGGAGAAGATGACTGATGTCTTGAGGGCTGCCTATGACGAGCAGCTTGAAACAGTAATCTTGTGCGCAAGTCGAATGGACCCTTTTTGCTGTTGGATGTTGAGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

35.38

Weight (kDa)

5.67

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03210
fragaria_vesca FvH4_1g27360
malus_domestica MD09G1279600.v1.1
prunus_persica Prupe.3G014700_v2.0.a1
pyrus_communis pycom09g18770
rosa_chinensis RchiOBHm_Chr3g0488741
rosa_laevigata RLG00000022925
rosa_multiflora Rmu_sc0000265.1_g000016 Rmu_sc0001208.1_g000071 Rmu_sc0001208.1_g000072
rosa_roxburghii Rroxscaffold_6G00393910
rosa_rugosa Rorug03G0241200
rosa_samantha Rh3AG289500 Rh3BG326500 Rh3CG324000 Rh3DG322400
rosa_wichuraiana Rw3G025630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
Acc16I TGCGCA 1 cut(s) 922
AccB1I GGYRCC 1 cut(s) 110
AccII CGCG 1 cut(s) 219
AciI CCGC 9 cut(s) 32, 85, 108, 214, 217, 339, 345, 375, 794
AclWI GGATC 1 cut(s) 400
AcoI YGGCCR 3 cut(s) 66, 361, 780
AcsI RAATTY 1 cut(s) 841
AcuI CTGAAG 1 cut(s) 88
AcyI GRCGYC 4 cut(s) 111, 138, 258, 372
AfiI CCNNNNNNNGG 5 cut(s) 253, 306, 426, 487, 640
AgsI TTSAA 4 cut(s) 17, 502, 607, 905
AjnI CCWGG 6 cut(s) 299, 305, 420, 425, 480, 633
AluBI AGCT 2 cut(s) 358, 901
AluI AGCT 2 cut(s) 358, 901
Alw26I GTCTC 5 cut(s) 193, 265, 340, 445, 739
AlwI GGATC 1 cut(s) 400
AoxI GGCC 6 cut(s) 66, 303, 361, 423, 564, 780
ApaI GGGCCC 1 cut(s) 568
ApeKI GCWGC 5 cut(s) 722, 748, 761, 884, 898
ApoI RAATTY 1 cut(s) 841
AspLEI GCGC 3 cut(s) 113, 507, 923
AspS9I GGNCC 7 cut(s) 303, 478, 484, 564, 565, 771, 934
AsuC2I CCSGG 2 cut(s) 272, 488
AsuHPI GGTGA 4 cut(s) 139, 160, 172, 503
AvaII GGWCC 4 cut(s) 478, 484, 771, 934
AxyI CCTNAGG 1 cut(s) 710
BaeGI GKGCMC 1 cut(s) 568
BalI TGGCCA 1 cut(s) 782
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 3 cut(s) 568, 647, 718
BbvI GCAGC 5 cut(s) 709, 760, 773, 871, 910
BccI CCATC 3 cut(s) 52, 140, 469
BceAI ACGGC 1 cut(s) 422
BcgI CGANNNNNNTGC 2 cut(s) 674, 708
BciT130I CCWGG 6 cut(s) 301, 307, 422, 427, 482, 635
BclI TGATCA 1 cut(s) 825
BcnI CCSGG 2 cut(s) 272, 488
BcoDI GTCTC 5 cut(s) 193, 265, 340, 445, 739
BfoI RGCGCY 2 cut(s) 114, 508
Bme1390I CCNGG 8 cut(s) 272, 301, 307, 422, 427, 482, 488, 635
Bme18I GGWCC 4 cut(s) 478, 484, 771, 934
BmgT120I GGNCC 7 cut(s) 303, 478, 484, 564, 565, 771, 934
BmiI GGNNCC 5 cut(s) 112, 566, 567, 772, 936
BmrFI CCNGG 8 cut(s) 272, 301, 307, 422, 427, 482, 488, 635
BmsI GCATC 4 cut(s) 84, 760, 804, 805
BoxI GACNNNNGTC 1 cut(s) 872
BpuEI CTTGAG 1 cut(s) 898
BpuMI CCSGG 2 cut(s) 272, 488
BsaHI GRCGYC 4 cut(s) 111, 138, 258, 372
BsaI GGTCTC 1 cut(s) 739
BsaJI CCNNGG 5 cut(s) 270, 300, 306, 420, 487
BsaWI WCCGGW 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 5 cut(s) 253, 306, 426, 487, 640
Bse118I RCCGGY 3 cut(s) 68, 410, 599
Bse21I CCTNAGG 1 cut(s) 710
BseBI CCWGG 6 cut(s) 301, 307, 422, 427, 482, 635
BseDI CCNNGG 5 cut(s) 270, 300, 306, 420, 487
BseGI GGATG 6 cut(s) 480, 538, 549, 819, 853, 957
BseLI CCNNNNNNNGG 5 cut(s) 253, 306, 426, 487, 640
BseMII CTCAG 2 cut(s) 94, 735
BseRI GAGGAG 6 cut(s) 181, 313, 316, 319, 374, 437
BseSI GKGCMC 1 cut(s) 568
BseX3I CGGCCG 1 cut(s) 361
BseXI GCAGC 5 cut(s) 709, 760, 773, 871, 910
Bsh1236I CGCG 1 cut(s) 219
Bsh1285I CGRYCG 2 cut(s) 364, 472
BshFI GGCC 6 cut(s) 68, 305, 363, 425, 566, 782
BshNI GGYRCC 1 cut(s) 110
BsiEI CGRYCG 2 cut(s) 364, 472
BsiSI CCGG 6 cut(s) 69, 272, 411, 472, 487, 600
BslFI GGGAC 2 cut(s) 269, 323
BslI CCNNNNNNNGG 5 cut(s) 253, 306, 426, 487, 640
BsmAI GTCTC 5 cut(s) 193, 265, 340, 445, 739
BsmBI CGTCTC 4 cut(s) 193, 265, 340, 445
BsmFI GGGAC 2 cut(s) 269, 323
BsnI GGCC 6 cut(s) 68, 305, 363, 425, 566, 782
Bso31I GGTCTC 1 cut(s) 739
Bsp120I GGGCCC 1 cut(s) 564
Bsp1286I GDGCHC 3 cut(s) 568, 647, 718
Bsp143I GATC 4 cut(s) 3, 379, 392, 825
BspACI CCGC 9 cut(s) 32, 85, 108, 214, 217, 339, 345, 375, 794
BspANI GGCC 6 cut(s) 68, 305, 363, 425, 566, 782
BspCNI CTCAG 2 cut(s) 93, 736
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 5 cut(s) 112, 566, 567, 772, 936
BspPI GGATC 1 cut(s) 400
BspQI GCTCTTC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 739
BsrFI RCCGGY 3 cut(s) 68, 410, 599
BssAI RCCGGY 3 cut(s) 68, 410, 599
BssECI CCNNGG 5 cut(s) 270, 300, 306, 420, 487
BssMI GATC 4 cut(s) 3, 379, 392, 825
BssNI GRCGYC 4 cut(s) 111, 138, 258, 372
Bst2UI CCWGG 6 cut(s) 301, 307, 422, 427, 482, 635
Bst4CI ACNGT 3 cut(s) 187, 512, 910
Bst6I CTCTTC 4 cut(s) 104, 122, 806, 848
BstACI GRCGYC 4 cut(s) 111, 138, 258, 372
BstC8I GCNNGC 5 cut(s) 37, 343, 412, 601, 780
BstDEI CTNAG 3 cut(s) 80, 710, 744
BstEII GGTNACC 1 cut(s) 491
BstF5I GGATG 6 cut(s) 480, 538, 549, 819, 853, 957
BstFNI CGCG 1 cut(s) 219
BstH2I RGCGCY 2 cut(s) 114, 508
BstHHI GCGC 3 cut(s) 113, 507, 923
BstKTI GATC 4 cut(s) 6, 382, 395, 828
BstMAI GTCTC 5 cut(s) 193, 265, 340, 445, 739
BstMBI GATC 4 cut(s) 3, 379, 392, 825
BstMCI CGRYCG 2 cut(s) 364, 472
BstMWI GCNNNNNNNGC 3 cut(s) 225, 572, 722
BstNI CCWGG 6 cut(s) 301, 307, 422, 427, 482, 635
BstNSI RCATGY 1 cut(s) 664
BstPAI GACNNNNGTC 1 cut(s) 872
BstPI GGTNACC 1 cut(s) 491
BstSCI CCNGG 8 cut(s) 270, 299, 305, 420, 425, 480, 486, 633
BstSLI GKGCMC 1 cut(s) 568
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 5 cut(s) 709, 760, 773, 871, 910
BstX2I RGATCY 1 cut(s) 392
BstYI RGATCY 1 cut(s) 392
BstZI CGGCCG 1 cut(s) 361
Bsu36I CCTNAGG 1 cut(s) 710
BsuRI GGCC 6 cut(s) 68, 305, 363, 425, 566, 782
BtsCI GGATG 6 cut(s) 480, 538, 549, 819, 853, 957
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 5 cut(s) 37, 343, 412, 601, 780
CfoI GCGC 3 cut(s) 113, 507, 923
Cfr10I RCCGGY 3 cut(s) 68, 410, 599
Cfr13I GGNCC 7 cut(s) 303, 478, 484, 564, 565, 771, 934
CseI GACGC 4 cut(s) 127, 323, 380, 669
CsiI ACCWGGT 1 cut(s) 480
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CviAII CATG 3 cut(s) 640, 661, 719
DdeI CTNAG 3 cut(s) 80, 710, 744
DinI GGCGCC 1 cut(s) 112
DpnI GATC 4 cut(s) 5, 381, 394, 827
DpnII GATC 4 cut(s) 3, 379, 392, 825
EaeI YGGCCR 3 cut(s) 66, 361, 780
EagI CGGCCG 1 cut(s) 361
Eam1104I CTCTTC 4 cut(s) 104, 122, 806, 848
EarI CTCTTC 4 cut(s) 104, 122, 806, 848
EciI GGCGGA 1 cut(s) 328
EclXI CGGCCG 1 cut(s) 361
Eco24I GRGCYC 3 cut(s) 568, 647, 718
Eco31I GGTCTC 1 cut(s) 739
Eco47I GGWCC 4 cut(s) 478, 484, 771, 934
Eco52I CGGCCG 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 88
Eco81I CCTNAGG 1 cut(s) 710
Eco91I GGTNACC 1 cut(s) 491
EcoO109I RGGNCCY 1 cut(s) 565
EcoO65I GGTNACC 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 841
EcoRII CCWGG 6 cut(s) 299, 305, 420, 425, 480, 633
EcoT38I GRGCYC 3 cut(s) 568, 647, 718
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
Esp3I CGTCTC 4 cut(s) 193, 265, 340, 445
FaeI CATG 3 cut(s) 643, 664, 722
FaiI YATR 5 cut(s) 573, 641, 662, 720, 891
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 2 cut(s) 269, 323
FatI CATG 3 cut(s) 639, 660, 718
FbaI TGATCA 1 cut(s) 825
FokI GGATG 5 cut(s) 487, 545, 556, 826, 860
FriOI GRGCYC 3 cut(s) 568, 647, 718
FspI TGCGCA 1 cut(s) 922
GlaI GCGC 3 cut(s) 112, 506, 922
HaeII RGCGCY 2 cut(s) 114, 508
HaeIII GGCC 6 cut(s) 68, 305, 363, 425, 566, 782
HapII CCGG 6 cut(s) 69, 272, 411, 472, 487, 600
HgaI GACGC 4 cut(s) 127, 323, 380, 669
HhaI GCGC 3 cut(s) 113, 507, 923
Hin1I GRCGYC 4 cut(s) 111, 138, 258, 372
Hin1II CATG 3 cut(s) 643, 664, 722
Hin6I GCGC 3 cut(s) 111, 505, 921
HinP1I GCGC 3 cut(s) 111, 505, 921
HinfI GANTC 6 cut(s) 221, 275, 366, 416, 464, 958
HpaII CCGG 6 cut(s) 69, 272, 411, 472, 487, 600
HphI GGTGA 4 cut(s) 139, 160, 172, 503
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 8 cut(s) 8, 57, 469, 522, 685, 745, 825, 847
Hpy188III TCNNGA 5 cut(s) 352, 461, 755, 805, 877
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 8 cut(s) 200, 203, 317, 374, 407, 410, 437, 742
HpyAV CCTTC 2 cut(s) 171, 798
HpyCH4III ACNGT 3 cut(s) 187, 512, 910
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 1 cut(s) 703
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 572, 722
HpyF3I CTNAG 3 cut(s) 80, 710, 744
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 4 cut(s) 111, 138, 258, 372
Hsp92II CATG 3 cut(s) 643, 664, 722
HspAI GCGC 3 cut(s) 111, 505, 921
KasI GGCGCC 1 cut(s) 110
KroI GCCGGC 2 cut(s) 410, 599
KroNI GCCGGC 2 cut(s) 412, 601
Ksp22I TGATCA 1 cut(s) 825
Kzo9I GATC 4 cut(s) 3, 379, 392, 825
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 2 cut(s) 8, 450
Lsp1109I GCAGC 5 cut(s) 709, 760, 773, 871, 910
LweI GCATC 4 cut(s) 84, 760, 804, 805
MabI ACCWGGT 1 cut(s) 480
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 3 cut(s) 166, 178, 491
MalI GATC 4 cut(s) 5, 381, 394, 827
MboI GATC 4 cut(s) 3, 379, 392, 825
MboII GAAGA 7 cut(s) 91, 94, 109, 550, 793, 865, 874
MfeI CAATTG 1 cut(s) 17
MflI RGATCY 1 cut(s) 392
MhlI GDGCHC 3 cut(s) 568, 647, 718
MlsI TGGCCA 1 cut(s) 782
MluCI AATT 3 cut(s) 17, 580, 841
MluNI TGGCCA 1 cut(s) 782
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 2 cut(s) 215, 410
MmeI TCCRAC 3 cut(s) 492, 531, 929
Mox20I TGGCCA 1 cut(s) 782
MreI CGCCGGCG 1 cut(s) 410
MroNI GCCGGC 2 cut(s) 410, 599
MscI TGGCCA 1 cut(s) 782
Msp20I TGGCCA 1 cut(s) 782
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 6 cut(s) 69, 272, 411, 472, 487, 600
MspR9I CCNGG 8 cut(s) 272, 301, 307, 422, 427, 482, 488, 635
MunI CAATTG 1 cut(s) 17
MvaI CCWGG 6 cut(s) 301, 307, 422, 427, 482, 635
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 3 cut(s) 225, 572, 722
NaeI GCCGGC 2 cut(s) 412, 601
NarI GGCGCC 1 cut(s) 111
NciI CCSGG 2 cut(s) 272, 488
NdeII GATC 4 cut(s) 3, 379, 392, 825
NgoMIV GCCGGC 2 cut(s) 410, 599
NlaIII CATG 3 cut(s) 643, 664, 722
NlaIV GGNNCC 5 cut(s) 112, 566, 567, 772, 936
NmeAIII GCCGAG 1 cut(s) 339
NmuCI GTSAC 3 cut(s) 166, 178, 491
NsbI TGCGCA 1 cut(s) 922
NspI RCATGY 1 cut(s) 664
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 6 cut(s) 135, 183, 255, 366, 375, 411
PdiI GCCGGC 2 cut(s) 412, 601
PfeI GAWTC 3 cut(s) 275, 366, 464
PflFI GACNNNGTC 4 cut(s) 176, 248, 482, 769
PleI GAGTC 2 cut(s) 215, 410
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 2 cut(s) 215, 410
PshAI GACNNNNGTC 1 cut(s) 872
Psp6I CCWGG 6 cut(s) 299, 305, 420, 425, 480, 633
PspEI GGTNACC 1 cut(s) 491
PspGI CCWGG 6 cut(s) 299, 305, 420, 425, 480, 633
PspN4I GGNNCC 5 cut(s) 112, 566, 567, 772, 936
PspOMI GGGCCC 1 cut(s) 564
PspPI GGNCC 7 cut(s) 303, 478, 484, 564, 565, 771, 934
PsuI RGATCY 1 cut(s) 392
PsyI GACNNNGTC 4 cut(s) 176, 248, 482, 769
SapI GCTCTTC 1 cut(s) 104
Sau3AI GATC 4 cut(s) 3, 379, 392, 825
Sau96I GGNCC 7 cut(s) 303, 478, 484, 564, 565, 771, 934
SchI GAGTC 2 cut(s) 215, 410
ScrFI CCNGG 8 cut(s) 272, 301, 307, 422, 427, 482, 488, 635
SduI GDGCHC 3 cut(s) 568, 647, 718
SexAI ACCWGGT 1 cut(s) 480
SfaNI GCATC 4 cut(s) 84, 760, 804, 805
SfoI GGCGCC 1 cut(s) 112
SgrAI CRCCGGYG 1 cut(s) 410
SinI GGWCC 4 cut(s) 478, 484, 771, 934
SmlI CTYRAG 1 cut(s) 877
SmoI CTYRAG 1 cut(s) 877
Sse9I AATT 3 cut(s) 17, 580, 841
SsiI CCGC 9 cut(s) 32, 85, 108, 214, 217, 339, 345, 375, 794
SspDI GGCGCC 1 cut(s) 110
StyD4I CCNGG 8 cut(s) 270, 299, 305, 420, 425, 480, 486, 633
TaaI ACNGT 3 cut(s) 187, 512, 910
TaiI ACGT 1 cut(s) 261
TaqI TCGA 5 cut(s) 285, 369, 462, 616, 928
TasI AATT 3 cut(s) 17, 580, 841
TauI GCSGC 7 cut(s) 35, 87, 111, 219, 348, 377, 796
TfiI GAWTC 3 cut(s) 275, 366, 464
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 3 cut(s) 166, 178, 491
TseI GCWGC 5 cut(s) 722, 748, 761, 884, 898
Tsp45I GTSAC 3 cut(s) 166, 178, 491
TspDTI ATGAA 2 cut(s) 109, 656
TspGWI ACGGA 5 cut(s) 154, 184, 322, 405, 763
TspRI CASTG 1 cut(s) 517
Tth111I GACNNNGTC 4 cut(s) 176, 248, 482, 769
VpaK11BI GGWCC 4 cut(s) 478, 484, 771, 934
XapI RAATTY 1 cut(s) 841
XceI RCATGY 1 cut(s) 664
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.