FvH4_1g27360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014601
Physical Location & Seq
Forward (+)
19061454 .. 19063133
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27360.t1

Sequence Viewer

Length: 1080 bp
ATGATCGGAGCAGTTCAATTGGGAGTGGTGGCGGCTTGCGTGGTGGTTCTAGTTCCGATGGGCATGGCCGGTTACCATCTCAGCCGCAACAAGATGCTCTTCTTCAGCGGCGCCCTCTTCATCACTCTCGCCATCGGCGTCCACCTCACCCCTTACTTCCCTTCCGTCACCGACTTCGTCACCTCCGTCTCCTCCGTCGTGGTTTTCCAGAACCGCCGCGACTCCTGCCTCTCCCACCTCCACGACGTGGTCTGGGACGTGACTCCCGACAACTCCACCGCCTCCCTCACTTACCACAAGTCCTGGGCCTGGGACGCTTCCTCCTCCTCCGTCTCCGCCTGCGGCTTCCAGAAGCTCGCCCGCCTCGACGCCGCCGATCTCCTCAACGGATCTTGGGTCGTCGTCGCCGGCGACTCTCAGGCGAGGCTGGTGGCGGTGTCGCTGCTTAACCTCGTTTTGGATTCGGAGCGGATGGACAAGATCCGGAGCGACTTGTTTAAGCGGCACAGTGATTATCAGATTGTGGTTGATGAGATTGGGATGAGGTTAGACTTCTTCTGGGCGCCTTATGCTCTCAATTTGACCACTCTGCTTGAGGGTTTCAATCGAAATCGGAACTATCCTGATGTGTTAATCATGGGCTCTGGCCTCTGGCACATGCTGCATTTCTCTAACGCATCCGATTATGGTGACTCATTGCAATCATTGAGCAGCCGTGCCGCTTCTCTTGTCTCTTCATCTGAGCATGAAGAGGCAGCAACAGGGTCGGTGCTGGCCAGACCTCCGCCGCATCTGTTCTGGATTGGGATGCCCACCTTGATCAACTCGATGCTGAATTCGGAGGAGAAGCGGGACAAGATGACTGATGCCTTGAGGGCTGCCTATGATGAGCAGCTCCGACAGAGTAATCTTGTTCGCCAGTCGAGTGGCCCATTTTTACTGTTGGATGTTGAGTCCTTGAGCTGGAATTGTGGGGTGAGGTGTACAGAGGATGGAATGCACTATGATATGCCGGTTTATGAAGCCGCGCTCCATATCATGCTCAATGCCTTGCTTATCGAATCTCATCAGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

360

Amino Acids

39.79

Weight (kDa)

5.56

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03210
fragaria_vesca FvH4_1g27360
malus_domestica MD09G1279600.v1.1
prunus_persica Prupe.3G014700_v2.0.a1
pyrus_communis pycom09g18770
rosa_chinensis RchiOBHm_Chr3g0488741
rosa_laevigata RLG00000022925
rosa_multiflora Rmu_sc0000265.1_g000016 Rmu_sc0001208.1_g000071 Rmu_sc0001208.1_g000072
rosa_roxburghii Rroxscaffold_6G00393910
rosa_rugosa Rorug03G0241200
rosa_samantha Rh3AG289500 Rh3BG326500 Rh3CG324000 Rh3DG322400
rosa_wichuraiana Rw3G025630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 110, 562
AccB7I CCANNNNNTGG 1 cut(s) 247
AccBSI CCGCTC 1 cut(s) 469
AccII CGCG 2 cut(s) 219, 1028
AccIII TCCGGA 1 cut(s) 483
AclWI GGATC 2 cut(s) 397, 475
AcoI YGGCCR 2 cut(s) 66, 774
AcsI RAATTY 1 cut(s) 835
AcuI CTGAAG 1 cut(s) 88
AcyI GRCGYC 4 cut(s) 111, 138, 369, 563
AdeI CACNNNGTG 1 cut(s) 247
AfaI GTAC 1 cut(s) 985
AfiI CCNNNNNNNGG 4 cut(s) 247, 309, 457, 963
AgsI TTSAA 2 cut(s) 17, 604
AjiI CACGTC 2 cut(s) 247, 259
AjnI CCWGG 2 cut(s) 302, 308
AluBI AGCT 4 cut(s) 355, 895, 963, 1075
AluI AGCT 4 cut(s) 355, 895, 963, 1075
Alw26I GTCTC 3 cut(s) 193, 337, 736
AlwI GGATC 2 cut(s) 397, 475
Aor13HI TCCGGA 1 cut(s) 483
AoxI GGCC 5 cut(s) 66, 306, 646, 774, 928
ApeKI GCWGC 6 cut(s) 442, 661, 711, 755, 878, 892
ApoI RAATTY 1 cut(s) 835
AspLEI GCGC 3 cut(s) 113, 565, 1030
AspS9I GGNCC 2 cut(s) 306, 929
AsuHPI GGTGA 5 cut(s) 139, 160, 172, 701, 988
BalI TGGCCA 1 cut(s) 776
BanI GGYRCC 2 cut(s) 110, 562
BanII GRGCYC 1 cut(s) 644
BbvI GCAGC 6 cut(s) 429, 648, 723, 767, 865, 904
BccI CCATC 5 cut(s) 52, 84, 140, 466, 986
BceAI ACGGC 1 cut(s) 699
BcgI CGANNNNNNTGC 2 cut(s) 747, 781
BciT130I CCWGG 2 cut(s) 304, 310
BclI TGATCA 1 cut(s) 819
BcoDI GTCTC 3 cut(s) 193, 337, 736
BfaI CTAG 1 cut(s) 50
BfoI RGCGCY 2 cut(s) 114, 566
BglI GCCNNNNNGGC 1 cut(s) 875
Bme1390I CCNGG 2 cut(s) 304, 310
BmgBI CACGTC 2 cut(s) 247, 259
BmgT120I GGNCC 2 cut(s) 306, 929
BmiI GGNNCC 2 cut(s) 112, 564
BmrFI CCNGG 2 cut(s) 304, 310
BmsI GCATC 6 cut(s) 84, 686, 798, 799, 819, 856
BpuEI CTTGAG 3 cut(s) 614, 892, 979
BsaHI GRCGYC 4 cut(s) 111, 138, 369, 563
BsaJI CCNNGG 2 cut(s) 303, 309
BsaWI WCCGGW 1 cut(s) 483
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 4 cut(s) 247, 309, 457, 963
Bse118I RCCGGY 3 cut(s) 68, 407, 1012
Bse1I ACTGG 1 cut(s) 919
Bse3DI GCAATG 1 cut(s) 695
BseAI TCCGGA 1 cut(s) 483
BseBI CCWGG 2 cut(s) 304, 310
BseDI CCNNGG 2 cut(s) 303, 309
BseGI GGATG 6 cut(s) 477, 546, 677, 813, 952, 997
BseLI CCNNNNNNNGG 4 cut(s) 247, 309, 457, 963
BseMI GCAATG 1 cut(s) 695
BseMII CTCAG 3 cut(s) 94, 431, 732
BseNI ACTGG 1 cut(s) 919
BseRI GAGGAG 5 cut(s) 181, 313, 316, 371, 857
BseXI GCAGC 6 cut(s) 429, 648, 723, 767, 865, 904
Bsh1236I CGCG 2 cut(s) 219, 1028
BshFI GGCC 5 cut(s) 68, 308, 648, 776, 930
BshNI GGYRCC 2 cut(s) 110, 562
BsiSI CCGG 4 cut(s) 69, 408, 484, 1013
BslFI GGGAC 3 cut(s) 269, 326, 866
BslI CCNNNNNNNGG 4 cut(s) 247, 309, 457, 963
BsmAI GTCTC 3 cut(s) 193, 337, 736
BsmBI CGTCTC 2 cut(s) 193, 337
BsmFI GGGAC 3 cut(s) 269, 326, 866
BsmI GAATGC 1 cut(s) 1002
BsnI GGCC 5 cut(s) 68, 308, 648, 776, 930
Bsp1286I GDGCHC 1 cut(s) 644
Bsp13I TCCGGA 1 cut(s) 483
Bsp1407I TGTACA 1 cut(s) 983
Bsp143I GATC 5 cut(s) 3, 376, 389, 480, 819
BspANI GGCC 5 cut(s) 68, 308, 648, 776, 930
BspCNI CTCAG 3 cut(s) 93, 430, 733
BspEI TCCGGA 1 cut(s) 483
BspFNI CGCG 2 cut(s) 219, 1028
BspLI GGNNCC 2 cut(s) 112, 564
BspPI GGATC 2 cut(s) 397, 475
BspQI GCTCTTC 1 cut(s) 104
BspT107I GGYRCC 2 cut(s) 110, 562
BsrBI CCGCTC 1 cut(s) 469
BsrDI GCAATG 1 cut(s) 695
BsrFI RCCGGY 3 cut(s) 68, 407, 1012
BsrGI TGTACA 1 cut(s) 983
BsrI ACTGG 1 cut(s) 919
BssAI RCCGGY 3 cut(s) 68, 407, 1012
BssECI CCNNGG 2 cut(s) 303, 309
BssMI GATC 5 cut(s) 3, 376, 389, 480, 819
BssNI GRCGYC 4 cut(s) 111, 138, 369, 563
Bst2UI CCWGG 2 cut(s) 304, 310
Bst4CI ACNGT 2 cut(s) 509, 942
Bst6I CTCTTC 4 cut(s) 104, 122, 739, 744
BstACI GRCGYC 4 cut(s) 111, 138, 369, 563
BstAPI GCANNNNNTGC 1 cut(s) 661
BstAUI TGTACA 1 cut(s) 983
BstC8I GCNNGC 6 cut(s) 37, 340, 357, 361, 409, 774
BstDEI CTNAG 3 cut(s) 80, 417, 741
BstEII GGTNACC 1 cut(s) 71
BstF5I GGATG 6 cut(s) 477, 546, 677, 813, 952, 997
BstFNI CGCG 2 cut(s) 219, 1028
BstH2I RGCGCY 2 cut(s) 114, 566
BstHHI GCGC 3 cut(s) 113, 565, 1030
BstKTI GATC 5 cut(s) 6, 379, 392, 483, 822
BstMAI GTCTC 3 cut(s) 193, 337, 736
BstMBI GATC 5 cut(s) 3, 376, 389, 480, 819
BstMWI GCNNNNNNNGC 5 cut(s) 225, 314, 569, 661, 875
BstNI CCWGG 2 cut(s) 304, 310
BstNSI RCATGY 1 cut(s) 661
BstPI GGTNACC 1 cut(s) 71
BstSCI CCNGG 2 cut(s) 302, 308
BstUI CGCG 2 cut(s) 219, 1028
BstV1I GCAGC 6 cut(s) 429, 648, 723, 767, 865, 904
BstX2I RGATCY 2 cut(s) 389, 480
BstXI CCANNNNNNTGG 1 cut(s) 926
BstYI RGATCY 2 cut(s) 389, 480
BsuRI GGCC 5 cut(s) 68, 308, 648, 776, 930
BtrI CACGTC 2 cut(s) 247, 259
BtsCI GGATG 6 cut(s) 477, 546, 677, 813, 952, 997
BtsIMutI CAGTG 1 cut(s) 514
Cac8I GCNNGC 6 cut(s) 37, 340, 357, 361, 409, 774
CfoI GCGC 3 cut(s) 113, 565, 1030
Cfr10I RCCGGY 3 cut(s) 68, 407, 1012
Cfr13I GGNCC 2 cut(s) 306, 929
CseI GACGC 3 cut(s) 127, 323, 377
Csp6I GTAC 1 cut(s) 984
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 5 cut(s) 64, 637, 658, 746, 1039
CviQI GTAC 1 cut(s) 984
DdeI CTNAG 3 cut(s) 80, 417, 741
DinI GGCGCC 2 cut(s) 112, 564
DpnI GATC 5 cut(s) 5, 378, 391, 482, 821
DpnII GATC 5 cut(s) 3, 376, 389, 480, 819
DraIII CACNNNGTG 1 cut(s) 247
EaeI YGGCCR 2 cut(s) 66, 774
Eam1104I CTCTTC 4 cut(s) 104, 122, 739, 744
EarI CTCTTC 4 cut(s) 104, 122, 739, 744
EciI GGCGGA 2 cut(s) 325, 774
Eco24I GRGCYC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 88
Eco91I GGTNACC 1 cut(s) 71
EcoO65I GGTNACC 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 2 cut(s) 302, 308
EcoT38I GRGCYC 1 cut(s) 644
EgeI GGCGCC 2 cut(s) 112, 564
EheI GGCGCC 2 cut(s) 112, 564
Esp3I CGTCTC 2 cut(s) 193, 337
FaeI CATG 5 cut(s) 67, 640, 661, 749, 1042
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 3 cut(s) 269, 326, 866
FatI CATG 5 cut(s) 63, 636, 657, 745, 1038
FauI CCCGC 2 cut(s) 368, 843
FbaI TGATCA 1 cut(s) 819
FokI GGATG 6 cut(s) 484, 553, 664, 820, 959, 1004
FriOI GRGCYC 1 cut(s) 644
FspBI CTAG 1 cut(s) 50
GlaI GCGC 3 cut(s) 112, 564, 1029
HaeII RGCGCY 2 cut(s) 114, 566
HaeIII GGCC 5 cut(s) 68, 308, 648, 776, 930
HapII CCGG 4 cut(s) 69, 408, 484, 1013
HgaI GACGC 3 cut(s) 127, 323, 377
HhaI GCGC 3 cut(s) 113, 565, 1030
Hin1I GRCGYC 4 cut(s) 111, 138, 369, 563
Hin1II CATG 5 cut(s) 67, 640, 661, 749, 1042
Hin6I GCGC 3 cut(s) 111, 563, 1028
HinP1I GCGC 3 cut(s) 111, 563, 1028
HindIII AAGCTT 1 cut(s) 1073
HinfI GANTC 7 cut(s) 221, 262, 413, 461, 692, 953, 1061
HpaII CCGG 4 cut(s) 69, 408, 484, 1013
HphI GGTGA 5 cut(s) 139, 160, 172, 701, 988
Hpy166II GTNNAC 2 cut(s) 142, 984
Hpy188III TCNNGA 6 cut(s) 208, 266, 349, 484, 623, 799
Hpy8I GTNNAC 2 cut(s) 142, 984
Hpy99I CGWCG 5 cut(s) 200, 248, 371, 404, 407
HpyAV CCTTC 1 cut(s) 171
HpyCH4III ACNGT 2 cut(s) 509, 942
HpyCH4IV ACGT 2 cut(s) 246, 258
HpyCH4V TGCA 3 cut(s) 664, 700, 1000
HpyF10VI GCNNNNNNNGC 5 cut(s) 225, 314, 569, 661, 875
HpyF3I CTNAG 3 cut(s) 80, 417, 741
HpySE526I ACGT 2 cut(s) 246, 258
Hsp92I GRCGYC 4 cut(s) 111, 138, 369, 563
Hsp92II CATG 5 cut(s) 67, 640, 661, 749, 1042
HspAI GCGC 3 cut(s) 111, 563, 1028
KasI GGCGCC 2 cut(s) 110, 562
Kpn2I TCCGGA 1 cut(s) 483
KroI GCCGGC 1 cut(s) 407
KroNI GCCGGC 1 cut(s) 409
Ksp22I TGATCA 1 cut(s) 819
Kzo9I GATC 5 cut(s) 3, 376, 389, 480, 819
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 5 cut(s) 8, 466, 486, 900, 1035
Lsp1109I GCAGC 6 cut(s) 429, 648, 723, 767, 865, 904
LweI GCATC 6 cut(s) 84, 686, 798, 799, 819, 856
MaeI CTAG 1 cut(s) 50
MaeII ACGT 2 cut(s) 246, 258
MaeIII GTNAC 5 cut(s) 71, 166, 178, 259, 689
MalI GATC 5 cut(s) 5, 378, 391, 482, 821
MbiI CCGCTC 1 cut(s) 469
MboI GATC 5 cut(s) 3, 376, 389, 480, 819
MboII GAAGA 6 cut(s) 91, 94, 109, 547, 726, 761
MfeI CAATTG 1 cut(s) 17
MflI RGATCY 2 cut(s) 389, 480
MhlI GDGCHC 1 cut(s) 644
MlsI TGGCCA 1 cut(s) 776
MluCI AATT 4 cut(s) 17, 577, 835, 967
MluNI TGGCCA 1 cut(s) 776
Mly113I GGCGCC 2 cut(s) 111, 563
MlyI GAGTC 5 cut(s) 215, 256, 407, 686, 962
MmeI TCCRAC 2 cut(s) 922, 924
Mox20I TGGCCA 1 cut(s) 776
MreI CGCCGGCG 1 cut(s) 407
MroI TCCGGA 1 cut(s) 483
MroNI GCCGGC 1 cut(s) 407
MscI TGGCCA 1 cut(s) 776
MseI TTAA 3 cut(s) 447, 498, 632
Msp20I TGGCCA 1 cut(s) 776
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 4 cut(s) 69, 408, 484, 1013
MspR9I CCNGG 2 cut(s) 304, 310
MunI CAATTG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 1002
MvaI CCWGG 2 cut(s) 304, 310
MvnI CGCG 2 cut(s) 219, 1028
MwoI GCNNNNNNNGC 5 cut(s) 225, 314, 569, 661, 875
NaeI GCCGGC 1 cut(s) 409
NarI GGCGCC 2 cut(s) 111, 563
NdeII GATC 5 cut(s) 3, 376, 389, 480, 819
NgoMIV GCCGGC 1 cut(s) 407
NlaIII CATG 5 cut(s) 67, 640, 661, 749, 1042
NlaIV GGNNCC 2 cut(s) 112, 564
NmuCI GTSAC 4 cut(s) 166, 178, 259, 689
NspI RCATGY 1 cut(s) 661
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 6 cut(s) 135, 183, 264, 363, 372, 408
PctI GAATGC 1 cut(s) 1002
PdiI GCCGGC 1 cut(s) 409
PfeI GAWTC 2 cut(s) 461, 1061
PflFI GACNNNGTC 2 cut(s) 176, 248
PflMI CCANNNNNTGG 1 cut(s) 247
PleI GAGTC 5 cut(s) 215, 256, 407, 686, 961
PluTI GGCGCC 2 cut(s) 114, 566
PpsI GAGTC 5 cut(s) 215, 256, 407, 686, 961
Psp6I CCWGG 2 cut(s) 302, 308
PspEI GGTNACC 1 cut(s) 71
PspGI CCWGG 2 cut(s) 302, 308
PspN4I GGNNCC 2 cut(s) 112, 564
PspPI GGNCC 2 cut(s) 306, 929
PsuI RGATCY 2 cut(s) 389, 480
PsyI GACNNNGTC 2 cut(s) 176, 248
RsaI GTAC 1 cut(s) 985
RsaNI GTAC 1 cut(s) 984
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 3 cut(s) 447, 498, 632
Sau3AI GATC 5 cut(s) 3, 376, 389, 480, 819
Sau96I GGNCC 2 cut(s) 306, 929
SchI GAGTC 5 cut(s) 215, 256, 407, 686, 962
ScrFI CCNGG 2 cut(s) 304, 310
SduI GDGCHC 1 cut(s) 644
SfaNI GCATC 6 cut(s) 84, 686, 798, 799, 819, 856
SfoI GGCGCC 2 cut(s) 112, 564
SgrAI CRCCGGYG 1 cut(s) 407
SmlI CTYRAG 3 cut(s) 593, 871, 958
SmoI CTYRAG 3 cut(s) 593, 871, 958
Sse9I AATT 4 cut(s) 17, 577, 835, 967
SspDI GGCGCC 2 cut(s) 110, 562
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 302, 308
TaaI ACNGT 2 cut(s) 509, 942
TaiI ACGT 2 cut(s) 249, 261
TaqI TCGA 5 cut(s) 366, 607, 827, 923, 1059
TasI AATT 4 cut(s) 17, 577, 835, 967
TatI WGTACW 1 cut(s) 983
TfiI GAWTC 2 cut(s) 461, 1061
Tru1I TTAA 3 cut(s) 447, 498, 632
Tru9I TTAA 3 cut(s) 447, 498, 632
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 4 cut(s) 166, 178, 259, 689
TseI GCWGC 6 cut(s) 442, 661, 711, 755, 878, 892
Tsp45I GTSAC 4 cut(s) 166, 178, 259, 689
TspDTI ATGAA 4 cut(s) 109, 726, 762, 1035
TspGWI ACGGA 5 cut(s) 154, 175, 184, 319, 402
TspRI CASTG 1 cut(s) 514
Tth111I GACNNNGTC 2 cut(s) 176, 248
Van91I CCANNNNNTGG 1 cut(s) 247
XapI RAATTY 1 cut(s) 835
XceI RCATGY 1 cut(s) 661
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.