Rh3DG322400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
35019711 .. 35021747
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG322400.1

Sequence Viewer

Length: 1083 bp
ATGATCGGAGCAGTTCAATTGGGAGTGTTGGCGGCTTGCGTTGTGGTTTTAGTTCCGATGGGCATGGCCGGTTATCATCTGAGCCGCAACAAGATGCTCTTCTTCAGCGGCGCCCTCTTCATCACTCTCGCCATCGGCGTCCACCTCACCCCTTACTTCCCTTCCGTCACCGACTTCGTCGCCACCGTCTCCTCCGTCGTCGTCTTCCAGAACCGCCGCGACTCCTGCCTCTCCCACCTCCACGACCTCGTCTGGGACGTCTCTCCCTCCCCCGATTCCCCCCTCGATTTCCACAAGTCCTGGGCCTGGGACGACGCTTCCTCCTCCTCCGTCTCCGCCTGCGGCTTCCAGAAGCTCGGCCGATTCGACGCCGCCGATCTCCTCAACGGATCTTGGGTCGTCGTCGCCGGCGACTCCCAGGCCAGGCTCGTCGCCGTCTCGCTCCTCGCTCTCGTTCTCGATTCCGACCGCATGGACCAGGTCCGCGGTGACCTGTTCAAGCGCCACAGTGATTATCAGATTGTGGTGGATGAGATTGGGATGAGGTTGGACTTCTTCTGGGCCCCTTATGCTCTCAATTTGACCACTCTCGTTGCCGGTTTCAACCGAAATCGAAACTACCCAGATGTCTTGGTCATGGGCTCTGGTTTGTGGCACATGCTTCATTTCACTAATGCGTCCGACTACGGTGCTTCACTGCAATCGCTGAGGGCTCACGCTGCTTCTCTGGTCTCCTCGTCTGAGCAGCATGAAGAAGCGGTGACAGGGTCCGTGCTGGCCAGGCCTTCGCCGCATCTCTTCTGGATTGGGATGCCCACTCTGATCAACTCAATGCTGAATTCGGATGAGAAGAGGGAGAAGATGACTGATGTTTTGAGGGCTGCCTATGACGAGCAGCTTCGAAGCAGTAATCTTGTGCGCAAGTCGAATGGACCCTTTTTGCTGTTGGATGTTGAGTCCTTGAGCTGGAACTGTGGGGTGAGATGTACGGTGGATGGAATGCACTATGATATGATAGTTTATGAAGCGGCGCTTCATATCATGCTAAATGCATTGCTCATTGAATCTCATCAGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

360

Amino Acids

39.8

Weight (kDa)

5.72

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014601)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
Acc16I TGCGCA 1 cut(s) 920
AccB1I GGYRCC 1 cut(s) 110
AccII CGCG 2 cut(s) 219, 486
AclWI GGATC 1 cut(s) 397
AcoI YGGCCR 3 cut(s) 66, 358, 777
AcsI RAATTY 1 cut(s) 838
AcuI CTGAAG 1 cut(s) 88
AcyI GRCGYC 4 cut(s) 111, 138, 258, 369
AfaI GTAC 1 cut(s) 988
AfiI CCNNNNNNNGG 4 cut(s) 253, 306, 423, 966
AgsI TTSAA 4 cut(s) 17, 499, 604, 1064
AjnI CCWGG 6 cut(s) 299, 305, 417, 422, 477, 779
AluBI AGCT 4 cut(s) 355, 898, 966, 1078
AluI AGCT 4 cut(s) 355, 898, 966, 1078
Alw26I GTCTC 5 cut(s) 193, 265, 337, 442, 736
AlwI GGATC 1 cut(s) 397
AoxI GGCC 7 cut(s) 66, 303, 358, 420, 561, 777, 782
ApaI GGGCCC 1 cut(s) 565
ApeKI GCWGC 4 cut(s) 719, 745, 881, 895
ApoI RAATTY 1 cut(s) 838
ArsI GACNNNNNNTTYG 2 cut(s) 856, 888
AspLEI GCGC 4 cut(s) 113, 504, 921, 1033
AspS9I GGNCC 7 cut(s) 303, 475, 481, 561, 562, 768, 932
AsuHPI GGTGA 5 cut(s) 139, 160, 500, 772, 991
AsuII TTCGAA 1 cut(s) 901
AvaII GGWCC 4 cut(s) 475, 481, 768, 932
BaeGI GKGCMC 1 cut(s) 565
BalI TGGCCA 1 cut(s) 779
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 3 cut(s) 565, 644, 715
BbsI GAAGAC 1 cut(s) 196
BbvCI CCTCAGC 1 cut(s) 707
BbvI GCAGC 4 cut(s) 706, 757, 868, 907
BccI CCATC 3 cut(s) 52, 140, 989
BceAI ACGGC 1 cut(s) 419
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 6 cut(s) 301, 307, 419, 424, 479, 781
BclI TGATCA 1 cut(s) 822
BcoDI GTCTC 5 cut(s) 193, 265, 337, 442, 736
BfoI RGCGCY 3 cut(s) 114, 505, 1034
Bme1390I CCNGG 6 cut(s) 301, 307, 419, 424, 479, 781
Bme18I GGWCC 4 cut(s) 475, 481, 768, 932
BmgT120I GGNCC 7 cut(s) 303, 475, 481, 561, 562, 768, 932
BmiI GGNNCC 5 cut(s) 112, 563, 564, 769, 934
BmrFI CCNGG 6 cut(s) 301, 307, 419, 424, 479, 781
BmsI GCATC 3 cut(s) 84, 801, 802
BpiI GAAGAC 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 707
Bpu14I TTCGAA 1 cut(s) 901
BpuEI CTTGAG 1 cut(s) 982
BsaHI GRCGYC 4 cut(s) 111, 138, 258, 369
BsaI GGTCTC 1 cut(s) 736
BsaJI CCNNGG 4 cut(s) 300, 306, 417, 484
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 4 cut(s) 253, 306, 423, 966
Bse118I RCCGGY 3 cut(s) 68, 407, 596
Bse3DI GCAATG 1 cut(s) 1052
BseBI CCWGG 6 cut(s) 301, 307, 419, 424, 479, 781
BseDI CCNNGG 4 cut(s) 300, 306, 417, 484
BseGI GGATG 6 cut(s) 535, 546, 816, 850, 955, 1000
BseLI CCNNNNNNNGG 4 cut(s) 253, 306, 423, 966
BseMI GCAATG 1 cut(s) 1052
BseMII CTCAG 3 cut(s) 71, 698, 732
BseRI GAGGAG 6 cut(s) 181, 313, 316, 371, 434, 724
BseSI GKGCMC 1 cut(s) 565
BseX3I CGGCCG 1 cut(s) 358
BseXI GCAGC 4 cut(s) 706, 757, 868, 907
Bsh1236I CGCG 2 cut(s) 219, 486
Bsh1285I CGRYCG 2 cut(s) 361, 469
BshFI GGCC 7 cut(s) 68, 305, 360, 422, 563, 779, 784
BshNI GGYRCC 1 cut(s) 110
BsiEI CGRYCG 2 cut(s) 361, 469
BsiSI CCGG 3 cut(s) 69, 408, 597
BslFI GGGAC 2 cut(s) 269, 323
BslI CCNNNNNNNGG 4 cut(s) 253, 306, 423, 966
BsmAI GTCTC 5 cut(s) 193, 265, 337, 442, 736
BsmBI CGTCTC 4 cut(s) 193, 265, 337, 442
BsmFI GGGAC 2 cut(s) 269, 323
BsmI GAATGC 1 cut(s) 1005
BsnI GGCC 7 cut(s) 68, 305, 360, 422, 563, 779, 784
Bso31I GGTCTC 1 cut(s) 736
Bsp119I TTCGAA 1 cut(s) 901
Bsp120I GGGCCC 1 cut(s) 561
Bsp1286I GDGCHC 3 cut(s) 565, 644, 715
Bsp143I GATC 4 cut(s) 3, 376, 389, 822
BspANI GGCC 7 cut(s) 68, 305, 360, 422, 563, 779, 784
BspCNI CTCAG 3 cut(s) 72, 699, 733
BspFNI CGCG 2 cut(s) 219, 486
BspLI GGNNCC 5 cut(s) 112, 563, 564, 769, 934
BspPI GGATC 1 cut(s) 397
BspQI GCTCTTC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 901
BspT107I GGYRCC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 736
BsrDI GCAATG 1 cut(s) 1052
BsrFI RCCGGY 3 cut(s) 68, 407, 596
BssAI RCCGGY 3 cut(s) 68, 407, 596
BssECI CCNNGG 4 cut(s) 300, 306, 417, 484
BssMI GATC 4 cut(s) 3, 376, 389, 822
BssNI GRCGYC 4 cut(s) 111, 138, 258, 369
Bst2UI CCWGG 6 cut(s) 301, 307, 419, 424, 479, 781
Bst4CI ACNGT 5 cut(s) 187, 509, 689, 974, 991
Bst6I CTCTTC 4 cut(s) 104, 122, 803, 845
BstACI GRCGYC 4 cut(s) 111, 138, 258, 369
BstBI TTCGAA 1 cut(s) 901
BstC8I GCNNGC 4 cut(s) 37, 340, 409, 777
BstDEI CTNAG 3 cut(s) 80, 707, 741
BstDSI CCRYGG 1 cut(s) 484
BstEII GGTNACC 1 cut(s) 488
BstF5I GGATG 6 cut(s) 535, 546, 816, 850, 955, 1000
BstFNI CGCG 2 cut(s) 219, 486
BstH2I RGCGCY 3 cut(s) 114, 505, 1034
BstHHI GCGC 4 cut(s) 113, 504, 921, 1033
BstKTI GATC 4 cut(s) 6, 379, 392, 825
BstMAI GTCTC 5 cut(s) 193, 265, 337, 442, 736
BstMBI GATC 4 cut(s) 3, 376, 389, 822
BstMCI CGRYCG 2 cut(s) 361, 469
BstMWI GCNNNNNNNGC 5 cut(s) 225, 569, 719, 781, 790
BstNI CCWGG 6 cut(s) 301, 307, 419, 424, 479, 781
BstNSI RCATGY 1 cut(s) 661
BstPI GGTNACC 1 cut(s) 488
BstSCI CCNGG 6 cut(s) 299, 305, 417, 422, 477, 779
BstSLI GKGCMC 1 cut(s) 565
BstUI CGCG 2 cut(s) 219, 486
BstV1I GCAGC 4 cut(s) 706, 757, 868, 907
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
BstZI CGGCCG 1 cut(s) 358
BsuRI GGCC 7 cut(s) 68, 305, 360, 422, 563, 779, 784
BtgI CCRYGG 1 cut(s) 484
BtsCI GGATG 6 cut(s) 535, 546, 816, 850, 955, 1000
BtsI GCAGTG 1 cut(s) 695
BtsIMutI CAGTG 2 cut(s) 514, 695
Cac8I GCNNGC 4 cut(s) 37, 340, 409, 777
CfoI GCGC 4 cut(s) 113, 504, 921, 1033
Cfr10I RCCGGY 3 cut(s) 68, 407, 596
Cfr13I GGNCC 7 cut(s) 303, 475, 481, 561, 562, 768, 932
Cfr42I CCGCGG 1 cut(s) 487
CseI GACGC 4 cut(s) 127, 323, 377, 666
CsiI ACCWGGT 1 cut(s) 477
Csp6I GTAC 1 cut(s) 987
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 6 cut(s) 64, 472, 637, 658, 749, 1042
CviQI GTAC 1 cut(s) 987
DdeI CTNAG 3 cut(s) 80, 707, 741
DinI GGCGCC 1 cut(s) 112
DpnI GATC 4 cut(s) 5, 378, 391, 824
DpnII GATC 4 cut(s) 3, 376, 389, 822
EaeI YGGCCR 3 cut(s) 66, 358, 777
EagI CGGCCG 1 cut(s) 358
Eam1104I CTCTTC 4 cut(s) 104, 122, 803, 845
EarI CTCTTC 4 cut(s) 104, 122, 803, 845
EciI GGCGGA 1 cut(s) 325
EclXI CGGCCG 1 cut(s) 358
Eco147I AGGCCT 1 cut(s) 784
Eco24I GRGCYC 3 cut(s) 565, 644, 715
Eco31I GGTCTC 1 cut(s) 736
Eco47I GGWCC 4 cut(s) 475, 481, 768, 932
Eco52I CGGCCG 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 88
Eco91I GGTNACC 1 cut(s) 488
EcoO109I RGGNCCY 1 cut(s) 562
EcoO65I GGTNACC 1 cut(s) 488
EcoRI GAATTC 1 cut(s) 838
EcoRII CCWGG 6 cut(s) 299, 305, 417, 422, 477, 779
EcoT22I ATGCAT 1 cut(s) 1054
EcoT38I GRGCYC 3 cut(s) 565, 644, 715
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
Esp3I CGTCTC 4 cut(s) 193, 265, 337, 442
FaeI CATG 6 cut(s) 67, 475, 640, 661, 752, 1045
FalI AAGNNNNNCTT 4 cut(s) 83, 115, 1017, 1049
FaqI GGGAC 2 cut(s) 269, 323
FatI CATG 6 cut(s) 63, 471, 636, 657, 748, 1041
FbaI TGATCA 1 cut(s) 822
FokI GGATG 6 cut(s) 542, 553, 823, 857, 962, 1007
FriOI GRGCYC 3 cut(s) 565, 644, 715
FspI TGCGCA 1 cut(s) 920
GlaI GCGC 4 cut(s) 112, 503, 920, 1032
HaeII RGCGCY 3 cut(s) 114, 505, 1034
HaeIII GGCC 7 cut(s) 68, 305, 360, 422, 563, 779, 784
HapII CCGG 3 cut(s) 69, 408, 597
HgaI GACGC 4 cut(s) 127, 323, 377, 666
HhaI GCGC 4 cut(s) 113, 504, 921, 1033
Hin1I GRCGYC 4 cut(s) 111, 138, 258, 369
Hin1II CATG 6 cut(s) 67, 475, 640, 661, 752, 1045
Hin6I GCGC 4 cut(s) 111, 502, 919, 1031
HinP1I GCGC 4 cut(s) 111, 502, 919, 1031
HindIII AAGCTT 1 cut(s) 1076
HinfI GANTC 7 cut(s) 221, 275, 363, 413, 461, 956, 1064
HpaII CCGG 3 cut(s) 69, 408, 597
HphI GGTGA 5 cut(s) 139, 160, 500, 772, 991
Hpy166II GTNNAC 1 cut(s) 142
Hpy188III TCNNGA 4 cut(s) 208, 349, 458, 802
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 8 cut(s) 182, 200, 203, 317, 371, 404, 407, 434
HpyAV CCTTC 2 cut(s) 171, 795
HpyCH4III ACNGT 5 cut(s) 187, 509, 689, 974, 991
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 700, 1003, 1052
HpyF10VI GCNNNNNNNGC 5 cut(s) 225, 569, 719, 781, 790
HpyF3I CTNAG 3 cut(s) 80, 707, 741
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 4 cut(s) 111, 138, 258, 369
Hsp92II CATG 6 cut(s) 67, 475, 640, 661, 752, 1045
HspAI GCGC 4 cut(s) 111, 502, 919, 1031
KasI GGCGCC 1 cut(s) 110
KroI GCCGGC 1 cut(s) 407
KroNI GCCGGC 1 cut(s) 409
Ksp22I TGATCA 1 cut(s) 822
KspI CCGCGG 1 cut(s) 487
Kzo9I GATC 4 cut(s) 3, 376, 389, 822
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 2 cut(s) 8, 447
Lsp1109I GCAGC 4 cut(s) 706, 757, 868, 907
LweI GCATC 3 cut(s) 84, 801, 802
MabI ACCWGGT 1 cut(s) 477
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 3 cut(s) 166, 488, 760
MalI GATC 4 cut(s) 5, 378, 391, 824
MboI GATC 4 cut(s) 3, 376, 389, 822
MboII GAAGA 9 cut(s) 91, 94, 109, 196, 547, 764, 790, 862, 871
MfeI CAATTG 1 cut(s) 17
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 3 cut(s) 565, 644, 715
MlsI TGGCCA 1 cut(s) 779
MluCI AATT 3 cut(s) 17, 577, 838
MluNI TGGCCA 1 cut(s) 779
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 3 cut(s) 215, 407, 965
MmeI TCCRAC 4 cut(s) 489, 528, 705, 927
Mox20I TGGCCA 1 cut(s) 779
Mph1103I ATGCAT 1 cut(s) 1054
MreI CGCCGGCG 1 cut(s) 407
MroNI GCCGGC 1 cut(s) 407
MscI TGGCCA 1 cut(s) 779
Msp20I TGGCCA 1 cut(s) 779
MspA1I CMGCKG 2 cut(s) 108, 486
MspI CCGG 3 cut(s) 69, 408, 597
MspR9I CCNGG 6 cut(s) 301, 307, 419, 424, 479, 781
MunI CAATTG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 1005
MvaI CCWGG 6 cut(s) 301, 307, 419, 424, 479, 781
MvnI CGCG 2 cut(s) 219, 486
MwoI GCNNNNNNNGC 5 cut(s) 225, 569, 719, 781, 790
NaeI GCCGGC 1 cut(s) 409
NarI GGCGCC 1 cut(s) 111
NdeII GATC 4 cut(s) 3, 376, 389, 822
NgoMIV GCCGGC 1 cut(s) 407
NlaIII CATG 6 cut(s) 67, 475, 640, 661, 752, 1045
NlaIV GGNNCC 5 cut(s) 112, 563, 564, 769, 934
NmeAIII GCCGAG 1 cut(s) 336
NmuCI GTSAC 3 cut(s) 166, 488, 760
NsbI TGCGCA 1 cut(s) 920
NsiI ATGCAT 1 cut(s) 1054
NspI RCATGY 1 cut(s) 661
NspV TTCGAA 1 cut(s) 901
PceI AGGCCT 1 cut(s) 784
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 6 cut(s) 135, 183, 255, 363, 372, 408
PctI GAATGC 1 cut(s) 1005
PdiI GCCGGC 1 cut(s) 409
PfeI GAWTC 4 cut(s) 275, 363, 461, 1064
PflFI GACNNNGTC 4 cut(s) 176, 248, 479, 766
PleI GAGTC 3 cut(s) 215, 407, 964
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 3 cut(s) 215, 407, 964
Psp6I CCWGG 6 cut(s) 299, 305, 417, 422, 477, 779
PspEI GGTNACC 1 cut(s) 488
PspGI CCWGG 6 cut(s) 299, 305, 417, 422, 477, 779
PspN4I GGNNCC 5 cut(s) 112, 563, 564, 769, 934
PspOMI GGGCCC 1 cut(s) 561
PspPI GGNCC 7 cut(s) 303, 475, 481, 561, 562, 768, 932
PsuI RGATCY 1 cut(s) 389
PsyI GACNNNGTC 4 cut(s) 176, 248, 479, 766
RsaI GTAC 1 cut(s) 988
RsaNI GTAC 1 cut(s) 987
SacII CCGCGG 1 cut(s) 487
SapI GCTCTTC 1 cut(s) 104
Sau3AI GATC 4 cut(s) 3, 376, 389, 822
Sau96I GGNCC 7 cut(s) 303, 475, 481, 561, 562, 768, 932
SchI GAGTC 3 cut(s) 215, 407, 965
ScrFI CCNGG 6 cut(s) 301, 307, 419, 424, 479, 781
SduI GDGCHC 3 cut(s) 565, 644, 715
SexAI ACCWGGT 1 cut(s) 477
SfaNI GCATC 3 cut(s) 84, 801, 802
SfoI GGCGCC 1 cut(s) 112
Sfr303I CCGCGG 1 cut(s) 487
SfuI TTCGAA 1 cut(s) 901
SgrAI CRCCGGYG 1 cut(s) 407
SgrBI CCGCGG 1 cut(s) 487
SinI GGWCC 4 cut(s) 475, 481, 768, 932
SmlI CTYRAG 1 cut(s) 961
SmoI CTYRAG 1 cut(s) 961
Sse9I AATT 3 cut(s) 17, 577, 838
SseBI AGGCCT 1 cut(s) 784
SspDI GGCGCC 1 cut(s) 110
StuI AGGCCT 1 cut(s) 784
StyD4I CCNGG 6 cut(s) 299, 305, 417, 422, 477, 779
TaaI ACNGT 5 cut(s) 187, 509, 689, 974, 991
TaiI ACGT 1 cut(s) 261
TaqI TCGA 6 cut(s) 285, 366, 459, 613, 901, 926
TasI AATT 3 cut(s) 17, 577, 838
TauI GCSGC 8 cut(s) 35, 87, 111, 219, 345, 374, 793, 1031
TfiI GAWTC 4 cut(s) 275, 363, 461, 1064
TscAI CASTG 2 cut(s) 514, 702
TseFI GTSAC 3 cut(s) 166, 488, 760
TseI GCWGC 4 cut(s) 719, 745, 881, 895
Tsp45I GTSAC 3 cut(s) 166, 488, 760
TspDTI ATGAA 5 cut(s) 109, 653, 765, 1025, 1038
TspGWI ACGGA 5 cut(s) 154, 184, 319, 402, 760
TspRI CASTG 2 cut(s) 514, 702
Tth111I GACNNNGTC 4 cut(s) 176, 248, 479, 766
VpaK11BI GGWCC 4 cut(s) 475, 481, 768, 932
XapI RAATTY 1 cut(s) 838
XceI RCATGY 1 cut(s) 661
ZraI GACGTC 1 cut(s) 259
Zsp2I ATGCAT 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.