Prupe.3G014700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014601
Physical Location & Seq
Forward (+)
1049185 .. 1053450
4266 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G014700.1

Sequence Viewer

Length: 1110 bp
ATGATCGGAGCAGTGCAATTGGGGGTGTTGGCTGCTTGCGTGGTGGTTTTGGTTCCGATGGGCATGGCCGGTTATCATCTCAGCCGCAACAAAATGCTCTTCTTCAGCGGCGCTCTCTTCATCACTCTTGCCATTGGCGTCCACCTCACCCCTTACTTCCCTTCCGTCAACGACTTCGTCACCACCGTCTCCTCCGTCGTCGTTTTCGAGAACCGCCGTGAGTCCTGCCTCTCCCACCTCCACGACGTCGTTTGGGAGGTCACCCCCTCCCCCAATTTCAACCCCCTCGACAACAACACCGTCAATTACGACAAGTCGTGGGCTTGGACTTCTTCCTCTACCGTTTCTGCATGCGGGTTTCAGAAACTAGGGCGTTTTGACGCCTCTGATCTGCTCAACGGATCCTGGGTTGTGGTGGCTGGTGACTCTCAAGCCAGGCTTGTGGCGCTTTCGTTGTTGAGTCTGGTTTTGGATTCTGGGCCTCTGGAGAAGGTTAATAGAGATCTGTTTAAGAGGCACAGTGATTATCAGATTGTGGTGGGTGAGATTGGGATGCGATTGGATTTCATCTGGGCTCCTTACACTGTCAATTTGACCAATCTGGTCAACGGTTTCAAGCGAAATCGCAACTACCCAGATGTGTTGGTGATGGGTTCTGGGCTCTGGCACATGCTTCACTACACCAACGCATCAGATTTTGGTGTTCAATTACAATCACTAAGGAGTGCTTCTGTGTCTTTGTTGCCATTTTCGCCAGATACCGGCTCCGACAGGCCGGTAACCAGCTCGGGCTCGGTCTCTGTTTCGGCCCGATCGCCCCACTTGTTTTGGATTGGCATGCCCACGTTGATAAACTCGATGTTGAATACAGAGGAGAAGAGGGAGAAGATGACTGATGCAATGCGTGGTGAGTATGATAAGGAGCTTCACAATAGTAAGATTTTGCGCAAAGCCGGTGGTCCCCTGTTGTTGCTGGACATTGAGTCCTTGAGTTGGAATTGCGGGGTTCGATGCACGGTTGATGGGATGCATTATGATATGCCTGTCTATGAAGCTGCACTTCATATCATGCTACATGCATTGCTCATCGAATCTCATCAGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

370

Amino Acids

40.87

Weight (kDa)

6.34

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03210
fragaria_vesca FvH4_1g27360
malus_domestica MD09G1279600.v1.1
prunus_persica Prupe.3G014700_v2.0.a1
pyrus_communis pycom09g18770
rosa_chinensis RchiOBHm_Chr3g0488741
rosa_laevigata RLG00000022925
rosa_multiflora Rmu_sc0000265.1_g000016 Rmu_sc0001208.1_g000071 Rmu_sc0001208.1_g000072
rosa_roxburghii Rroxscaffold_6G00393910
rosa_rugosa Rorug03G0241200
rosa_samantha Rh3AG289500 Rh3BG326500 Rh3CG324000 Rh3DG322400
rosa_wichuraiana Rw3G025630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
Acc16I TGCGCA 1 cut(s) 947
AciI CCGC 5 cut(s) 85, 108, 214, 354, 1002
AclWI GGATC 2 cut(s) 396, 409
AcoI YGGCCR 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 88
AcyI GRCGYC 3 cut(s) 138, 246, 381
AfiI CCNNNNNNNGG 2 cut(s) 761, 993
AgsI TTSAA 4 cut(s) 280, 616, 707, 865
AhdI GACNNNNNGTC 1 cut(s) 982
AjnI CCWGG 2 cut(s) 404, 434
AluBI AGCT 4 cut(s) 786, 925, 1055, 1105
AluI AGCT 4 cut(s) 786, 925, 1055, 1105
Alw26I GTCTC 2 cut(s) 193, 802
AlwI GGATC 2 cut(s) 396, 409
Ama87I CYCGRG 1 cut(s) 787
AoxI GGCC 4 cut(s) 66, 479, 773, 807
ApeKI GCWGC 2 cut(s) 32, 1055
AspLEI GCGC 3 cut(s) 113, 448, 948
AspS9I GGNCC 3 cut(s) 479, 808, 959
AsuHPI GGTGA 7 cut(s) 139, 172, 253, 434, 554, 658, 920
AvaI CYCGRG 1 cut(s) 787
AvaII GGWCC 1 cut(s) 959
BamHI GGATCC 1 cut(s) 401
BanII GRGCYC 3 cut(s) 577, 663, 794
BbvI GCAGC 2 cut(s) 19, 1042
BccI CCATC 3 cut(s) 52, 643, 1016
BceAI ACGGC 1 cut(s) 201
BciT130I CCWGG 2 cut(s) 406, 436
BcoDI GTCTC 2 cut(s) 193, 802
BfaI CTAG 1 cut(s) 368
BfoI RGCGCY 2 cut(s) 114, 449
BglII AGATCT 1 cut(s) 502
BisI GCNGC 4 cut(s) 33, 85, 109, 1056
BlsI GCNGC 4 cut(s) 34, 86, 110, 1057
Bme1390I CCNGG 2 cut(s) 406, 436
Bme18I GGWCC 1 cut(s) 959
BmeRI GACNNNNNGTC 1 cut(s) 982
BmeT110I CYCGRG 1 cut(s) 787
BmgT120I GGNCC 3 cut(s) 479, 808, 959
BmiI GGNNCC 5 cut(s) 54, 403, 576, 766, 961
BmrFI CCNGG 2 cut(s) 406, 436
BmsI GCATC 5 cut(s) 543, 698, 886, 1001, 1017
BpmI CTGGAG 1 cut(s) 506
BpuEI CTTGAG 2 cut(s) 414, 1009
BsaHI GRCGYC 3 cut(s) 138, 246, 381
BsaI GGTCTC 1 cut(s) 802
BsaJI CCNNGG 1 cut(s) 405
Bsc4I CCNNNNNNNGG 2 cut(s) 761, 993
Bse118I RCCGGY 4 cut(s) 68, 761, 775, 953
Bse3DI GCAATG 2 cut(s) 906, 1079
BseBI CCWGG 2 cut(s) 406, 436
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 2 cut(s) 558, 1032
BseLI CCNNNNNNNGG 2 cut(s) 761, 993
BseMI GCAATG 2 cut(s) 906, 1079
BseMII CTCAG 1 cut(s) 94
BseRI GAGGAG 2 cut(s) 181, 887
BseXI GCAGC 2 cut(s) 19, 1042
BsgI GTGCAG 1 cut(s) 1041
Bsh1285I CGRYCG 1 cut(s) 815
BshFI GGCC 4 cut(s) 68, 481, 775, 809
BsiEI CGRYCG 1 cut(s) 815
BsiHKCI CYCGRG 1 cut(s) 787
BsiSI CCGG 4 cut(s) 69, 762, 776, 954
BslFI GGGAC 1 cut(s) 945
BslI CCNNNNNNNGG 2 cut(s) 761, 993
BsmAI GTCTC 2 cut(s) 193, 802
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 945
BsnI GGCC 4 cut(s) 68, 481, 775, 809
Bso31I GGTCTC 1 cut(s) 802
BsoBI CYCGRG 1 cut(s) 787
Bsp1286I GDGCHC 3 cut(s) 577, 663, 794
Bsp143I GATC 5 cut(s) 3, 388, 401, 502, 812
BspACI CCGC 5 cut(s) 85, 108, 214, 354, 1002
BspANI GGCC 4 cut(s) 68, 481, 775, 809
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 5 cut(s) 54, 403, 576, 766, 961
BspPI GGATC 2 cut(s) 396, 409
BspQI GCTCTTC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 802
BsrDI GCAATG 2 cut(s) 906, 1079
BsrFI RCCGGY 4 cut(s) 68, 761, 775, 953
BssAI RCCGGY 4 cut(s) 68, 761, 775, 953
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 5 cut(s) 3, 388, 401, 502, 812
BssNI GRCGYC 3 cut(s) 138, 246, 381
Bst2UI CCWGG 2 cut(s) 406, 436
Bst4CI ACNGT 7 cut(s) 187, 301, 343, 521, 586, 611, 1018
Bst6I CTCTTC 3 cut(s) 104, 122, 872
BstACI GRCGYC 3 cut(s) 138, 246, 381
BstC8I GCNNGC 3 cut(s) 37, 352, 839
BstDEI CTNAG 2 cut(s) 80, 719
BstEII GGTNACC 2 cut(s) 259, 778
BstF5I GGATG 2 cut(s) 558, 1032
BstH2I RGCGCY 2 cut(s) 114, 449
BstHHI GCGC 3 cut(s) 113, 448, 948
BstKTI GATC 5 cut(s) 6, 391, 404, 505, 815
BstMAI GTCTC 2 cut(s) 193, 802
BstMBI GATC 5 cut(s) 3, 388, 401, 502, 812
BstMCI CGRYCG 1 cut(s) 815
BstMWI GCNNNNNNNGC 2 cut(s) 445, 751
BstNI CCWGG 2 cut(s) 406, 436
BstNSI RCATGY 4 cut(s) 354, 673, 841, 1079
BstPI GGTNACC 2 cut(s) 259, 778
BstSCI CCNGG 2 cut(s) 404, 434
BstV1I GCAGC 2 cut(s) 19, 1042
BstX2I RGATCY 2 cut(s) 401, 502
BstXI CCANNNNNNTGG 1 cut(s) 442
BstYI RGATCY 2 cut(s) 401, 502
BsuRI GGCC 4 cut(s) 68, 481, 775, 809
BtsCI GGATG 2 cut(s) 558, 1032
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 3 cut(s) 18, 526, 582
Cac8I GCNNGC 3 cut(s) 37, 352, 839
CfoI GCGC 3 cut(s) 113, 448, 948
Cfr10I RCCGGY 4 cut(s) 68, 761, 775, 953
Cfr13I GGNCC 3 cut(s) 479, 808, 959
CseI GACGC 2 cut(s) 127, 389
CspCI CAANNNNNGTGG 4 cut(s) 809, 844, 937, 972
CviAII CATG 6 cut(s) 64, 351, 670, 838, 1069, 1076
DdeI CTNAG 2 cut(s) 80, 719
DpnI GATC 5 cut(s) 5, 390, 403, 504, 814
DpnII GATC 5 cut(s) 3, 388, 401, 502, 812
DriI GACNNNNNGTC 1 cut(s) 982
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 3 cut(s) 104, 122, 872
Eam1105I GACNNNNNGTC 1 cut(s) 982
EarI CTCTTC 3 cut(s) 104, 122, 872
Eco24I GRGCYC 3 cut(s) 577, 663, 794
Eco31I GGTCTC 1 cut(s) 802
Eco47I GGWCC 1 cut(s) 959
Eco57I CTGAAG 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 787
Eco91I GGTNACC 2 cut(s) 259, 778
EcoO65I GGTNACC 2 cut(s) 259, 778
EcoRII CCWGG 2 cut(s) 404, 434
EcoT22I ATGCAT 2 cut(s) 1032, 1081
EcoT38I GRGCYC 3 cut(s) 577, 663, 794
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 6 cut(s) 67, 354, 673, 841, 1072, 1079
FalI AAGNNNNNCTT 6 cut(s) 423, 455, 712, 744, 1044, 1076
FaqI GGGAC 1 cut(s) 945
FatI CATG 6 cut(s) 63, 350, 669, 837, 1068, 1075
FauI CCCGC 2 cut(s) 347, 995
Fnu4HI GCNGC 4 cut(s) 33, 85, 109, 1056
FokI GGATG 2 cut(s) 565, 1039
FriOI GRGCYC 3 cut(s) 577, 663, 794
Fsp4HI GCNGC 4 cut(s) 33, 85, 109, 1056
FspBI CTAG 1 cut(s) 368
FspI TGCGCA 1 cut(s) 947
GlaI GCGC 3 cut(s) 112, 447, 947
GluI GCNGC 4 cut(s) 33, 85, 109, 1056
GsuI CTGGAG 1 cut(s) 506
HaeII RGCGCY 2 cut(s) 114, 449
HaeIII GGCC 4 cut(s) 68, 481, 775, 809
HapII CCGG 4 cut(s) 69, 762, 776, 954
HgaI GACGC 2 cut(s) 127, 389
HhaI GCGC 3 cut(s) 113, 448, 948
Hin1I GRCGYC 3 cut(s) 138, 246, 381
Hin1II CATG 6 cut(s) 67, 354, 673, 841, 1072, 1079
Hin6I GCGC 3 cut(s) 111, 446, 946
HinP1I GCGC 3 cut(s) 111, 446, 946
HincII GTYRAC 2 cut(s) 169, 607
HindII GTYRAC 2 cut(s) 169, 607
HindIII AAGCTT 1 cut(s) 1103
HinfI GANTC 6 cut(s) 221, 425, 460, 473, 983, 1091
HpaII CCGG 4 cut(s) 69, 762, 776, 954
HphI GGTGA 7 cut(s) 139, 172, 253, 434, 554, 658, 920
Hpy166II GTNNAC 3 cut(s) 142, 169, 607
Hpy188I TCNGA 8 cut(s) 8, 57, 363, 388, 531, 694, 769, 1101
Hpy188III TCNNGA 2 cut(s) 208, 485
Hpy8I GTNNAC 3 cut(s) 142, 169, 607
Hpy99I CGWCG 4 cut(s) 200, 203, 248, 251
HpyAV CCTTC 2 cut(s) 171, 484
HpyCH4III ACNGT 7 cut(s) 187, 301, 343, 521, 586, 611, 1018
HpyCH4IV ACGT 2 cut(s) 246, 845
HpyCH4V TGCA 7 cut(s) 16, 350, 899, 1014, 1030, 1058, 1079
HpyF10VI GCNNNNNNNGC 2 cut(s) 445, 751
HpyF3I CTNAG 2 cut(s) 80, 719
HpySE526I ACGT 2 cut(s) 246, 845
Hsp92I GRCGYC 3 cut(s) 138, 246, 381
Hsp92II CATG 6 cut(s) 67, 354, 673, 841, 1072, 1079
HspAI GCGC 3 cut(s) 111, 446, 946
Kzo9I GATC 5 cut(s) 3, 388, 401, 502, 812
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 4 cut(s) 8, 580, 770, 922
Lsp1109I GCAGC 2 cut(s) 19, 1042
LweI GCATC 5 cut(s) 543, 698, 886, 1001, 1017
MaeI CTAG 1 cut(s) 368
MaeII ACGT 2 cut(s) 246, 845
MaeIII GTNAC 4 cut(s) 178, 259, 422, 778
MalI GATC 5 cut(s) 5, 390, 403, 504, 814
MboI GATC 5 cut(s) 3, 388, 401, 502, 812
MboII GAAGA 6 cut(s) 91, 94, 109, 324, 889, 898
MfeI CAATTG 1 cut(s) 17
MflI RGATCY 2 cut(s) 401, 502
MhlI GDGCHC 3 cut(s) 577, 663, 794
MluCI AATT 6 cut(s) 17, 274, 304, 589, 707, 997
MlyI GAGTC 4 cut(s) 230, 419, 469, 992
MmeI TCCRAC 2 cut(s) 792, 974
Mph1103I ATGCAT 2 cut(s) 1032, 1081
MseI TTAA 2 cut(s) 495, 510
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 4 cut(s) 69, 762, 776, 954
MspR9I CCNGG 2 cut(s) 406, 436
MunI CAATTG 1 cut(s) 17
MvaI CCWGG 2 cut(s) 406, 436
MwoI GCNNNNNNNGC 2 cut(s) 445, 751
NdeII GATC 5 cut(s) 3, 388, 401, 502, 812
NlaIII CATG 6 cut(s) 67, 354, 673, 841, 1072, 1079
NlaIV GGNNCC 5 cut(s) 54, 403, 576, 766, 961
NmuCI GTSAC 3 cut(s) 178, 259, 422
NsbI TGCGCA 1 cut(s) 947
NsiI ATGCAT 2 cut(s) 1032, 1081
NspI RCATGY 4 cut(s) 354, 673, 841, 1079
PaeI GCATGC 2 cut(s) 354, 841
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 204
PfeI GAWTC 2 cut(s) 473, 1091
PflFI GACNNNGTC 1 cut(s) 176
PkrI GCNGC 4 cut(s) 34, 86, 110, 1057
Ple19I CGATCG 1 cut(s) 815
PleI GAGTC 4 cut(s) 229, 419, 468, 991
PpsI GAGTC 4 cut(s) 229, 419, 468, 991
Psp6I CCWGG 2 cut(s) 404, 434
PspEI GGTNACC 2 cut(s) 259, 778
PspGI CCWGG 2 cut(s) 404, 434
PspN4I GGNNCC 5 cut(s) 54, 403, 576, 766, 961
PspPI GGNCC 3 cut(s) 479, 808, 959
PsuI RGATCY 2 cut(s) 401, 502
PsyI GACNNNGTC 1 cut(s) 176
PvuI CGATCG 1 cut(s) 815
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 495, 510
SatI GCNGC 4 cut(s) 33, 85, 109, 1056
Sau3AI GATC 5 cut(s) 3, 388, 401, 502, 812
Sau96I GGNCC 3 cut(s) 479, 808, 959
SchI GAGTC 4 cut(s) 230, 419, 469, 992
ScrFI CCNGG 2 cut(s) 406, 436
SduI GDGCHC 3 cut(s) 577, 663, 794
SfaNI GCATC 5 cut(s) 543, 698, 886, 1001, 1017
SinI GGWCC 1 cut(s) 959
SmlI CTYRAG 2 cut(s) 429, 988
SmoI CTYRAG 2 cut(s) 429, 988
SphI GCATGC 2 cut(s) 354, 841
Sse9I AATT 6 cut(s) 17, 274, 304, 589, 707, 997
SsiI CCGC 5 cut(s) 85, 108, 214, 354, 1002
SspMI CTAG 1 cut(s) 368
StyD4I CCNGG 2 cut(s) 404, 434
TaaI ACNGT 7 cut(s) 187, 301, 343, 521, 586, 611, 1018
TaiI ACGT 2 cut(s) 249, 848
TaqI TCGA 5 cut(s) 207, 288, 857, 1009, 1089
TaqII GACCGA 1 cut(s) 784
TasI AATT 6 cut(s) 17, 274, 304, 589, 707, 997
TauI GCSGC 2 cut(s) 87, 111
TfiI GAWTC 2 cut(s) 473, 1091
Tru1I TTAA 2 cut(s) 495, 510
Tru9I TTAA 2 cut(s) 495, 510
TscAI CASTG 3 cut(s) 18, 526, 589
TseFI GTSAC 3 cut(s) 178, 259, 422
TseI GCWGC 2 cut(s) 32, 1055
Tsp45I GTSAC 3 cut(s) 178, 259, 422
TspDTI ATGAA 4 cut(s) 109, 556, 1052, 1065
TspGWI ACGGA 3 cut(s) 154, 184, 414
TspRI CASTG 3 cut(s) 18, 526, 589
Tth111I GACNNNGTC 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 959
XceI RCATGY 4 cut(s) 354, 673, 841, 1079
XspI CTAG 1 cut(s) 368
ZraI GACGTC 1 cut(s) 247
Zsp2I ATGCAT 2 cut(s) 1032, 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.