pycom09g18770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0014601
Physical Location & Seq
Reverse (-)
19535356 .. 19536207
852 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g18770.1

Sequence Viewer

Length: 852 bp
ATGATAGGAGCTGTGCCATTCGGGTTGCTGGCTGCGTGCGTCGTCGTTTTGGTCCCAATGGCCATGGCCGGATACCATCTCAGCCGCAAAAAGATGCTTTTCTTCAGCGGCGCTCTCTTCATCACTCTCGCCATCGGCGTCCACCTCACCCCTTACTTCCCCTCCGTCAACGACTTCGTCACCACCGTCTCCTCCGTCGTCGTCTTCGAGAACCGCCGCGACTCTTGCCTCTCCCACCTCCACGACGTTGTTTGGGAGGTTACCCCTTCCCCCAATTTCAACGCCCTCGACAACAATACCGTCAATTACGACAAGTCCTGGGCTTGGCCTTCTTCCTTCGCCGTTTCTGCATGTGGATTTCAGAAGCTGGGTCGTTTCGACGCCTCCGATCTGCTCAACGGCTCCTGGGTCGTGGTGGCCGGAGACTCTCAGGCGAGGCTGGTGGCGCTTTCGCTGCTCAGCCTGGTTCTGGATTCTGGGCCGCTGGAGAAGGTTAACAAGGATCTATTCAAGAGGCACAGTGATTATCAGATTGTGGTGGGCGAGATTGGGATGCGATTGGATTTCATCTGGGCTCCTTATACTGTGAATTTGACCAATCTGGTGTCGAAGTTCAATCGAAATCGGAACTTCCCGGATGTGTTGGTGATGGGTTCTGGGCTATGGCACATGCTGAACTTCACCAACGCTTCAGATTTCCGTGTTCAACTGCAATCACTCAGGATCGATCTGCGGCGTCCTTGTTGCCAGTTTCGCCGGAGACTGGCTCTGAAAAGCCGGAAACCAGCTCGGCTTCAGGCTCTGGTTCGGCCCGGACGCCACACTTGTTCTGGGTTGGCATGCCCACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

31.62

Weight (kDa)

9.71

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03210
fragaria_vesca FvH4_1g27360
malus_domestica MD09G1279600.v1.1
prunus_persica Prupe.3G014700_v2.0.a1
pyrus_communis pycom09g18770
rosa_chinensis RchiOBHm_Chr3g0488741
rosa_laevigata RLG00000022925
rosa_multiflora Rmu_sc0000265.1_g000016 Rmu_sc0001208.1_g000071 Rmu_sc0001208.1_g000072
rosa_roxburghii Rroxscaffold_6G00393910
rosa_rugosa Rorug03G0241200
rosa_samantha Rh3AG289500 Rh3BG326500 Rh3CG324000 Rh3DG322400
rosa_wichuraiana Rw3G025630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 219
AciI CCGC 6 cut(s) 85, 108, 214, 217, 482, 733
AclWI GGATC 2 cut(s) 510, 731
AcoI YGGCCR 3 cut(s) 60, 66, 417
AcsI RAATTY 1 cut(s) 589
AcuI CTGAAG 3 cut(s) 88, 675, 779
AcyI GRCGYC 4 cut(s) 138, 381, 736, 817
AfiI CCNNNNNNNGG 3 cut(s) 324, 469, 763
AgsI TTSAA 4 cut(s) 280, 511, 616, 707
AjnI CCWGG 3 cut(s) 317, 404, 462
AluBI AGCT 3 cut(s) 11, 367, 788
AluI AGCT 3 cut(s) 11, 367, 788
Alw26I GTCTC 3 cut(s) 193, 417, 754
AlwI GGATC 2 cut(s) 510, 731
AlwNI CAGNNNCTG 2 cut(s) 367, 802
AoxI GGCC 6 cut(s) 60, 66, 326, 417, 479, 809
ApeKI GCWGC 2 cut(s) 32, 454
ApoI RAATTY 1 cut(s) 589
AspLEI GCGC 2 cut(s) 113, 448
AspS9I GGNCC 3 cut(s) 52, 479, 810
AsuC2I CCSGG 2 cut(s) 635, 813
AsuHPI GGTGA 4 cut(s) 139, 172, 658, 673
AvaII GGWCC 1 cut(s) 52
BalI TGGCCA 1 cut(s) 62
BanII GRGCYC 1 cut(s) 577
BbsI GAAGAC 1 cut(s) 196
BbvI GCAGC 2 cut(s) 19, 441
BccI CCATC 3 cut(s) 84, 140, 643
BceAI ACGGC 2 cut(s) 326, 415
BciT130I CCWGG 3 cut(s) 319, 406, 464
BciVI GTATCC 1 cut(s) 65
BcnI CCSGG 2 cut(s) 635, 813
BcoDI GTCTC 3 cut(s) 193, 417, 754
BfoI RGCGCY 2 cut(s) 114, 449
BfuI GTATCC 1 cut(s) 65
BisI GCNGC 7 cut(s) 33, 85, 109, 217, 455, 482, 734
BlpI GCTNAGC 1 cut(s) 458
BlsI GCNGC 7 cut(s) 34, 86, 110, 218, 456, 483, 735
Bme1390I CCNGG 5 cut(s) 319, 406, 464, 635, 813
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 3 cut(s) 52, 479, 810
BmiI GGNNCC 3 cut(s) 54, 403, 576
BmrFI CCNGG 5 cut(s) 319, 406, 464, 635, 813
BmsI GCATC 2 cut(s) 84, 543
BpiI GAAGAC 1 cut(s) 196
BplI GAGNNNNNCTC 2 cut(s) 751, 783
BpmI CTGGAG 1 cut(s) 506
Bpu1102I GCTNAGC 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 635, 813
Bsa29I ATCGAT 1 cut(s) 726
BsaHI GRCGYC 4 cut(s) 138, 381, 736, 817
BsaJI CCNNGG 3 cut(s) 63, 318, 405
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 3 cut(s) 324, 469, 763
Bse1I ACTGG 2 cut(s) 748, 768
BseBI CCWGG 3 cut(s) 319, 406, 464
BseCI ATCGAT 1 cut(s) 726
BseDI CCNNGG 3 cut(s) 63, 318, 405
BseGI GGATG 2 cut(s) 558, 643
BseLI CCNNNNNNNGG 3 cut(s) 324, 469, 763
BseMII CTCAG 4 cut(s) 94, 443, 472, 733
BseNI ACTGG 2 cut(s) 748, 768
BseRI GAGGAG 1 cut(s) 181
BseXI GCAGC 2 cut(s) 19, 441
BseYI CCCAGC 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 6 cut(s) 62, 68, 328, 419, 481, 811
BshVI ATCGAT 1 cut(s) 726
BsiSI CCGG 6 cut(s) 69, 420, 635, 757, 778, 813
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 324, 469, 763
BsmAI GTCTC 3 cut(s) 193, 417, 754
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 6 cut(s) 62, 68, 328, 419, 481, 811
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 4 cut(s) 388, 502, 723, 727
Bsp1720I GCTNAGC 1 cut(s) 458
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 6 cut(s) 85, 108, 214, 217, 482, 733
BspANI GGCC 6 cut(s) 62, 68, 328, 419, 481, 811
BspCNI CTCAG 4 cut(s) 93, 442, 471, 732
BspDI ATCGAT 1 cut(s) 726
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 3 cut(s) 54, 403, 576
BspPI GGATC 2 cut(s) 510, 731
BsrI ACTGG 2 cut(s) 748, 768
BssECI CCNNGG 3 cut(s) 63, 318, 405
BssMI GATC 4 cut(s) 388, 502, 723, 727
BssNI GRCGYC 4 cut(s) 138, 381, 736, 817
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 3 cut(s) 319, 406, 464
Bst4CI ACNGT 4 cut(s) 187, 301, 521, 586
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 4 cut(s) 138, 381, 736, 817
BstC8I GCNNGC 3 cut(s) 30, 37, 841
BstDEI CTNAG 4 cut(s) 80, 429, 458, 719
BstDSI CCRYGG 1 cut(s) 63
BstEII GGTNACC 1 cut(s) 259
BstF5I GGATG 2 cut(s) 558, 643
BstFNI CGCG 1 cut(s) 219
BstH2I RGCGCY 2 cut(s) 114, 449
BstHHI GCGC 2 cut(s) 113, 448
BstKTI GATC 4 cut(s) 391, 505, 726, 730
BstMAI GTCTC 3 cut(s) 193, 417, 754
BstMBI GATC 4 cut(s) 388, 502, 723, 727
BstMWI GCNNNNNNNGC 5 cut(s) 225, 347, 445, 454, 753
BstNI CCWGG 3 cut(s) 319, 406, 464
BstNSI RCATGY 3 cut(s) 354, 673, 843
BstPI GGTNACC 1 cut(s) 259
BstSCI CCNGG 5 cut(s) 317, 404, 462, 633, 811
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 19, 441
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
Bsu15I ATCGAT 1 cut(s) 726
BsuI GTATCC 1 cut(s) 65
BsuRI GGCC 6 cut(s) 62, 68, 328, 419, 481, 811
BsuTUI ATCGAT 1 cut(s) 726
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 558, 643
BtsIMutI CAGTG 1 cut(s) 526
Cac8I GCNNGC 3 cut(s) 30, 37, 841
CaiI CAGNNNCTG 2 cut(s) 367, 802
CfoI GCGC 2 cut(s) 113, 448
Cfr13I GGNCC 3 cut(s) 52, 479, 810
ClaI ATCGAT 1 cut(s) 726
CseI GACGC 5 cut(s) 28, 127, 389, 725, 825
CviAII CATG 4 cut(s) 64, 351, 670, 840
DdeI CTNAG 4 cut(s) 80, 429, 458, 719
DpnI GATC 4 cut(s) 390, 504, 725, 729
DpnII GATC 4 cut(s) 388, 502, 723, 727
EaeI YGGCCR 3 cut(s) 60, 66, 417
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 577
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 3 cut(s) 88, 675, 779
Eco91I GGTNACC 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 259
EcoRII CCWGG 3 cut(s) 317, 404, 462
EcoT14I CCWWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 577
ErhI CCWWGG 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 4 cut(s) 67, 354, 673, 843
FaiI YATR 6 cut(s) 65, 352, 582, 664, 671, 841
FaqI GGGAC 1 cut(s) 38
FatI CATG 4 cut(s) 63, 350, 669, 839
Fnu4HI GCNGC 7 cut(s) 33, 85, 109, 217, 455, 482, 734
FokI GGATG 2 cut(s) 565, 650
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 7 cut(s) 33, 85, 109, 217, 455, 482, 734
GlaI GCGC 2 cut(s) 112, 447
GluI GCNGC 7 cut(s) 33, 85, 109, 217, 455, 482, 734
GsaI CCCAGC 1 cut(s) 371
GsuI CTGGAG 1 cut(s) 506
HaeII RGCGCY 2 cut(s) 114, 449
HaeIII GGCC 6 cut(s) 62, 68, 328, 419, 481, 811
HapII CCGG 6 cut(s) 69, 420, 635, 757, 778, 813
HgaI GACGC 5 cut(s) 28, 127, 389, 725, 825
HhaI GCGC 2 cut(s) 113, 448
Hin1I GRCGYC 4 cut(s) 138, 381, 736, 817
Hin1II CATG 4 cut(s) 67, 354, 673, 843
Hin6I GCGC 2 cut(s) 111, 446
HinP1I GCGC 2 cut(s) 111, 446
HincII GTYRAC 2 cut(s) 169, 496
HindII GTYRAC 2 cut(s) 169, 496
HinfI GANTC 3 cut(s) 221, 425, 473
HpaI GTTAAC 1 cut(s) 496
HpaII CCGG 6 cut(s) 69, 420, 635, 757, 778, 813
HphI GGTGA 4 cut(s) 139, 172, 658, 673
Hpy166II GTNNAC 3 cut(s) 142, 169, 496
Hpy188I TCNGA 6 cut(s) 363, 388, 531, 627, 694, 771
Hpy188III TCNNGA 4 cut(s) 208, 470, 511, 721
Hpy8I GTNNAC 3 cut(s) 142, 169, 496
Hpy99I CGWCG 6 cut(s) 44, 47, 200, 203, 248, 383
HpyAV CCTTC 4 cut(s) 276, 339, 346, 484
HpyCH4III ACNGT 4 cut(s) 187, 301, 521, 586
HpyCH4IV ACGT 2 cut(s) 246, 847
HpyCH4V TGCA 2 cut(s) 350, 712
HpyF10VI GCNNNNNNNGC 5 cut(s) 225, 347, 445, 454, 753
HpyF3I CTNAG 4 cut(s) 80, 429, 458, 719
HpySE526I ACGT 2 cut(s) 246, 847
Hsp92I GRCGYC 4 cut(s) 138, 381, 736, 817
Hsp92II CATG 4 cut(s) 67, 354, 673, 843
HspAI GCGC 2 cut(s) 111, 446
KspAI GTTAAC 1 cut(s) 496
Kzo9I GATC 4 cut(s) 388, 502, 723, 727
LmnI GCTCC 3 cut(s) 8, 407, 580
Lsp1109I GCAGC 2 cut(s) 19, 441
LweI GCATC 2 cut(s) 84, 543
MaeII ACGT 2 cut(s) 246, 847
MaeIII GTNAC 2 cut(s) 178, 259
MalI GATC 4 cut(s) 390, 504, 725, 729
MboI GATC 4 cut(s) 388, 502, 723, 727
MboII GAAGA 4 cut(s) 94, 109, 196, 324
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 1 cut(s) 577
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 3 cut(s) 274, 304, 589
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 2 cut(s) 215, 419
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 495
Msp20I TGGCCA 1 cut(s) 62
MspA1I CMGCKG 2 cut(s) 108, 484
MspI CCGG 6 cut(s) 69, 420, 635, 757, 778, 813
MspR9I CCNGG 5 cut(s) 319, 406, 464, 635, 813
MvaI CCWGG 3 cut(s) 319, 406, 464
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 5 cut(s) 225, 347, 445, 454, 753
NciI CCSGG 2 cut(s) 635, 813
NcoI CCATGG 1 cut(s) 63
NdeII GATC 4 cut(s) 388, 502, 723, 727
NlaIII CATG 4 cut(s) 67, 354, 673, 843
NlaIV GGNNCC 3 cut(s) 54, 403, 576
NmeAIII GCCGAG 1 cut(s) 769
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 3 cut(s) 354, 673, 843
PaeI GCATGC 1 cut(s) 843
PcsI WCGNNNNNNNCGW 4 cut(s) 135, 183, 204, 384
PfeI GAWTC 1 cut(s) 473
PflFI GACNNNGTC 1 cut(s) 176
PfoI TCCNGGA 1 cut(s) 633
PkrI GCNGC 7 cut(s) 34, 86, 110, 218, 456, 483, 735
PleI GAGTC 2 cut(s) 215, 419
PpsI GAGTC 2 cut(s) 215, 419
Psp6I CCWGG 3 cut(s) 317, 404, 462
PspEI GGTNACC 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 3 cut(s) 317, 404, 462
PspN4I GGNNCC 3 cut(s) 54, 403, 576
PspPI GGNCC 3 cut(s) 52, 479, 810
PstNI CAGNNNCTG 2 cut(s) 367, 802
PsuI RGATCY 1 cut(s) 502
PsyI GACNNNGTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 7 cut(s) 33, 85, 109, 217, 455, 482, 734
Sau3AI GATC 4 cut(s) 388, 502, 723, 727
Sau96I GGNCC 3 cut(s) 52, 479, 810
SchI GAGTC 2 cut(s) 215, 419
ScrFI CCNGG 5 cut(s) 319, 406, 464, 635, 813
SduI GDGCHC 1 cut(s) 577
SetI ASST 9 cut(s) 13, 147, 240, 249, 261, 369, 495, 790, 850
SfaNI GCATC 2 cut(s) 84, 543
SinI GGWCC 1 cut(s) 52
SphI GCATGC 1 cut(s) 843
Sse9I AATT 3 cut(s) 274, 304, 589
SsiI CCGC 6 cut(s) 85, 108, 214, 217, 482, 733
StyD4I CCNGG 5 cut(s) 317, 404, 462, 633, 811
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 4 cut(s) 187, 301, 521, 586
TaiI ACGT 2 cut(s) 249, 850
TaqI TCGA 6 cut(s) 207, 288, 378, 608, 619, 726
TasI AATT 3 cut(s) 274, 304, 589
TauI GCSGC 5 cut(s) 87, 111, 219, 484, 736
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 1 cut(s) 526
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 2 cut(s) 32, 454
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 109, 556
TspGWI ACGGA 3 cut(s) 154, 184, 689
TspRI CASTG 1 cut(s) 526
Tth111I GACNNNGTC 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 589
XceI RCATGY 3 cut(s) 354, 673, 843
XcmI CCANNNNNNNNNTGG 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.