Rmu_sc0001208.1_g000072

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001208.1
OG0014601
Physical Location & Seq
Forward (+)
309018 .. 310670
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001208.1_g000072.1.cds

Sequence Viewer

Length: 900 bp
atgtgtcctgctgctgcctccccggcttggaggactctaaagcgtctcgccatcggcgtccacctcaccccttacttcccttccgtcaccgacttcgtcaccaccgtctcctccgtcgtcgtcttccagaaccgccgcgactcctgcctctcccacctccacgacctcaagctcggccgattcgacgccgccgatctgctcaacggatcttgggtcgtcgtcgccggcgactcccaggccaggctcgtcgccgtctcgctcctcgctctcgttctcgattccgaccggatggaccaggtccgcggtgacctgttcaagcgccacagtgattatcagattgtggtggatgagattgggatgaggttggacttcttctgggccccttatgctctcaatttgaccactctcgttgccggtttcaaccgaaatcgaaactacccagatgtcttggtcatgggctctggtttgtggcacatgcttcatttcactaatgcgtccgactacggtgcttcactgcaatcgctgagggctcacgctgcttctctggtctcgtcttctgagcagcatgaagaagcggtgacagggtccgtgctggccaggccttcgccgcatctcttctggattgggatgcccactctgatcaactcaatgctgaattcggatgagaagagggagaagatgaccgatgtcttgagggctgcctacgacgaccagcttcgaagcagtaatcttgtgcgcaagtcgaatggacccttcttgctgttggatgttgaatccttgagctggaattgtggggtgagatgtactgtggatggaatgcactatgatatgatagtttatgaagccgcgcttcatatcatgctaaatgcattgctcattgaatctcatcagaagctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.36

Weight (kDa)

6.16

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03210
fragaria_vesca FvH4_1g27360
malus_domestica MD09G1279600.v1.1
prunus_persica Prupe.3G014700_v2.0.a1
pyrus_communis pycom09g18770
rosa_chinensis RchiOBHm_Chr3g0488741
rosa_laevigata RLG00000022925
rosa_multiflora Rmu_sc0000265.1_g000016 Rmu_sc0001208.1_g000071 Rmu_sc0001208.1_g000072
rosa_roxburghii Rroxscaffold_6G00393910
rosa_rugosa Rorug03G0241200
rosa_samantha Rh3AG289500 Rh3BG326500 Rh3CG324000 Rh3DG322400
rosa_wichuraiana Rw3G025630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 737
AccII CGCG 3 cut(s) 138, 303, 848
AciI CCGC 8 cut(s) 133, 136, 189, 301, 303, 575, 608, 846
AclWI GGATC 1 cut(s) 214
AcoI YGGCCR 2 cut(s) 175, 594
AcsI RAATTY 1 cut(s) 655
AcyI GRCGYC 2 cut(s) 57, 186
AfaI GTAC 1 cut(s) 805
AfiI CCNNNNNNNGG 3 cut(s) 27, 240, 783
AgsI TTSAA 4 cut(s) 316, 421, 773, 881
AjnI CCWGG 4 cut(s) 234, 239, 294, 596
AluBI AGCT 4 cut(s) 172, 715, 783, 895
AluI AGCT 4 cut(s) 172, 715, 783, 895
Alw26I GTCTC 4 cut(s) 50, 112, 259, 553
AlwI GGATC 1 cut(s) 214
AoxI GGCC 5 cut(s) 175, 237, 378, 594, 599
ApaI GGGCCC 1 cut(s) 382
ApeKI GCWGC 5 cut(s) 11, 14, 536, 562, 698
ApoI RAATTY 1 cut(s) 655
AspLEI GCGC 3 cut(s) 321, 738, 850
AspS9I GGNCC 6 cut(s) 292, 298, 378, 379, 585, 749
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 6 cut(s) 58, 79, 91, 317, 589, 808
AsuII TTCGAA 1 cut(s) 718
AvaII GGWCC 4 cut(s) 292, 298, 585, 749
BaeGI GKGCMC 1 cut(s) 382
BalI TGGCCA 1 cut(s) 596
BanII GRGCYC 3 cut(s) 382, 461, 532
BbsI GAAGAC 2 cut(s) 115, 546
BbvCI CCTCAGC 1 cut(s) 524
BbvI GCAGC 3 cut(s) 523, 574, 685
BccI CCATC 3 cut(s) 59, 283, 806
BceAI ACGGC 1 cut(s) 236
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 4 cut(s) 236, 241, 296, 598
BclI TGATCA 1 cut(s) 639
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 4 cut(s) 50, 112, 259, 553
BfoI RGCGCY 1 cut(s) 322
BglI GCCNNNNNGGC 1 cut(s) 23
BisI GCNGC 9 cut(s) 12, 15, 136, 189, 537, 563, 608, 699, 846
BlsI GCNGC 9 cut(s) 13, 16, 137, 190, 538, 564, 609, 700, 847
Bme1390I CCNGG 5 cut(s) 23, 236, 241, 296, 598
Bme18I GGWCC 4 cut(s) 292, 298, 585, 749
BmgT120I GGNCC 6 cut(s) 292, 298, 378, 379, 585, 749
BmiI GGNNCC 4 cut(s) 380, 381, 586, 751
BmrFI CCNGG 5 cut(s) 23, 236, 241, 296, 598
BmsI GCATC 2 cut(s) 618, 619
BoxI GACNNNNGTC 1 cut(s) 686
BpiI GAAGAC 2 cut(s) 115, 546
Bpu10I CCTNAGC 1 cut(s) 524
Bpu14I TTCGAA 1 cut(s) 718
BpuEI CTTGAG 3 cut(s) 152, 712, 799
BpuMI CCSGG 1 cut(s) 23
BsaHI GRCGYC 2 cut(s) 57, 186
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 3 cut(s) 21, 234, 301
BsaWI WCCGGW 1 cut(s) 285
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 240, 783
Bse118I RCCGGY 2 cut(s) 224, 413
Bse3DI GCAATG 1 cut(s) 869
BseBI CCWGG 4 cut(s) 236, 241, 296, 598
BseDI CCNNGG 3 cut(s) 21, 234, 301
BseGI GGATG 7 cut(s) 294, 352, 363, 633, 667, 772, 817
BseLI CCNNNNNNNGG 3 cut(s) 27, 240, 783
BseMI GCAATG 1 cut(s) 869
BseMII CTCAG 2 cut(s) 515, 549
BseRI GAGGAG 2 cut(s) 100, 251
BseSI GKGCMC 1 cut(s) 382
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 3 cut(s) 523, 574, 685
Bsh1236I CGCG 3 cut(s) 138, 303, 848
Bsh1285I CGRYCG 2 cut(s) 178, 286
BshFI GGCC 5 cut(s) 177, 239, 380, 596, 601
BsiEI CGRYCG 2 cut(s) 178, 286
BsiSI CCGG 4 cut(s) 23, 225, 286, 414
BslI CCNNNNNNNGG 3 cut(s) 27, 240, 783
BsmAI GTCTC 4 cut(s) 50, 112, 259, 553
BsmBI CGTCTC 3 cut(s) 50, 112, 259
BsmI GAATGC 1 cut(s) 822
BsnI GGCC 5 cut(s) 177, 239, 380, 596, 601
Bso31I GGTCTC 1 cut(s) 553
Bsp119I TTCGAA 1 cut(s) 718
Bsp120I GGGCCC 1 cut(s) 378
Bsp1286I GDGCHC 3 cut(s) 382, 461, 532
Bsp143I GATC 3 cut(s) 193, 206, 639
BspACI CCGC 8 cut(s) 133, 136, 189, 301, 303, 575, 608, 846
BspANI GGCC 5 cut(s) 177, 239, 380, 596, 601
BspCNI CTCAG 2 cut(s) 516, 550
BspFNI CGCG 3 cut(s) 138, 303, 848
BspLI GGNNCC 4 cut(s) 380, 381, 586, 751
BspPI GGATC 1 cut(s) 214
BspT104I TTCGAA 1 cut(s) 718
BspTNI GGTCTC 1 cut(s) 553
BsrDI GCAATG 1 cut(s) 869
BsrFI RCCGGY 2 cut(s) 224, 413
BssAI RCCGGY 2 cut(s) 224, 413
BssECI CCNNGG 3 cut(s) 21, 234, 301
BssMI GATC 3 cut(s) 193, 206, 639
BssNI GRCGYC 2 cut(s) 57, 186
Bst2UI CCWGG 4 cut(s) 236, 241, 296, 598
Bst4CI ACNGT 4 cut(s) 106, 326, 506, 808
Bst6I CTCTTC 2 cut(s) 620, 662
BstACI GRCGYC 2 cut(s) 57, 186
BstBI TTCGAA 1 cut(s) 718
BstC8I GCNNGC 2 cut(s) 226, 594
BstDEI CTNAG 2 cut(s) 524, 558
BstDSI CCRYGG 1 cut(s) 301
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 7 cut(s) 294, 352, 363, 633, 667, 772, 817
BstFNI CGCG 3 cut(s) 138, 303, 848
BstH2I RGCGCY 1 cut(s) 322
BstHHI GCGC 3 cut(s) 321, 738, 850
BstKTI GATC 3 cut(s) 196, 209, 642
BstMAI GTCTC 4 cut(s) 50, 112, 259, 553
BstMBI GATC 3 cut(s) 193, 206, 639
BstMCI CGRYCG 2 cut(s) 178, 286
BstMWI GCNNNNNNNGC 6 cut(s) 23, 144, 386, 536, 598, 607
BstNI CCWGG 4 cut(s) 236, 241, 296, 598
BstNSI RCATGY 1 cut(s) 478
BstPAI GACNNNNGTC 1 cut(s) 686
BstPI GGTNACC 1 cut(s) 305
BstSCI CCNGG 5 cut(s) 21, 234, 239, 294, 596
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 3 cut(s) 138, 303, 848
BstV1I GCAGC 3 cut(s) 523, 574, 685
BstV2I GAAGAC 2 cut(s) 115, 546
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BstZI CGGCCG 1 cut(s) 175
BsuRI GGCC 5 cut(s) 177, 239, 380, 596, 601
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 7 cut(s) 294, 352, 363, 633, 667, 772, 817
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 2 cut(s) 331, 512
Cac8I GCNNGC 2 cut(s) 226, 594
CfoI GCGC 3 cut(s) 321, 738, 850
Cfr10I RCCGGY 2 cut(s) 224, 413
Cfr13I GGNCC 6 cut(s) 292, 298, 378, 379, 585, 749
Cfr42I CCGCGG 1 cut(s) 304
CseI GACGC 4 cut(s) 32, 46, 194, 483
CsiI ACCWGGT 1 cut(s) 294
Csp6I GTAC 1 cut(s) 804
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviAII CATG 4 cut(s) 454, 475, 566, 859
CviQI GTAC 1 cut(s) 804
DdeI CTNAG 2 cut(s) 524, 558
DpnI GATC 3 cut(s) 195, 208, 641
DpnII GATC 3 cut(s) 193, 206, 639
EaeI YGGCCR 2 cut(s) 175, 594
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 620, 662
EarI CTCTTC 2 cut(s) 620, 662
EclXI CGGCCG 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 601
Eco24I GRGCYC 3 cut(s) 382, 461, 532
Eco31I GGTCTC 1 cut(s) 553
Eco47I GGWCC 4 cut(s) 292, 298, 585, 749
Eco52I CGGCCG 1 cut(s) 175
Eco91I GGTNACC 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 379
EcoO65I GGTNACC 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 655
EcoRII CCWGG 4 cut(s) 234, 239, 294, 596
EcoT22I ATGCAT 1 cut(s) 871
EcoT38I GRGCYC 3 cut(s) 382, 461, 532
Esp3I CGTCTC 3 cut(s) 50, 112, 259
FaeI CATG 4 cut(s) 457, 478, 569, 862
FaiI YATR 9 cut(s) 387, 455, 476, 567, 825, 830, 840, 855, 860
FalI AAGNNNNNCTT 2 cut(s) 834, 866
FatI CATG 4 cut(s) 453, 474, 565, 858
FbaI TGATCA 1 cut(s) 639
Fnu4HI GCNGC 9 cut(s) 12, 15, 136, 189, 537, 563, 608, 699, 846
FokI GGATG 7 cut(s) 301, 359, 370, 640, 674, 779, 824
FriOI GRGCYC 3 cut(s) 382, 461, 532
Fsp4HI GCNGC 9 cut(s) 12, 15, 136, 189, 537, 563, 608, 699, 846
FspI TGCGCA 1 cut(s) 737
GlaI GCGC 3 cut(s) 320, 737, 849
GluI GCNGC 9 cut(s) 12, 15, 136, 189, 537, 563, 608, 699, 846
HaeII RGCGCY 1 cut(s) 322
HaeIII GGCC 5 cut(s) 177, 239, 380, 596, 601
HapII CCGG 4 cut(s) 23, 225, 286, 414
HgaI GACGC 4 cut(s) 32, 46, 194, 483
HhaI GCGC 3 cut(s) 321, 738, 850
Hin1I GRCGYC 2 cut(s) 57, 186
Hin1II CATG 4 cut(s) 457, 478, 569, 862
Hin6I GCGC 3 cut(s) 319, 736, 848
HinP1I GCGC 3 cut(s) 319, 736, 848
HindIII AAGCTT 1 cut(s) 893
HinfI GANTC 7 cut(s) 34, 140, 180, 230, 278, 773, 881
HpaII CCGG 4 cut(s) 23, 225, 286, 414
HphI GGTGA 6 cut(s) 58, 79, 91, 317, 589, 808
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 7 cut(s) 283, 336, 499, 559, 639, 661, 891
Hpy188III TCNNGA 4 cut(s) 127, 275, 619, 691
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 7 cut(s) 119, 122, 188, 221, 224, 251, 710
HpyAV CCTTC 3 cut(s) 90, 612, 763
HpyCH4III ACNGT 4 cut(s) 106, 326, 506, 808
HpyCH4V TGCA 3 cut(s) 517, 820, 869
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 144, 386, 536, 598, 607
HpyF3I CTNAG 2 cut(s) 524, 558
Hsp92I GRCGYC 2 cut(s) 57, 186
Hsp92II CATG 4 cut(s) 457, 478, 569, 862
HspAI GCGC 3 cut(s) 319, 736, 848
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 639
KspI CCGCGG 1 cut(s) 304
Kzo9I GATC 3 cut(s) 193, 206, 639
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 3 cut(s) 523, 574, 685
LweI GCATC 2 cut(s) 618, 619
MabI ACCWGGT 1 cut(s) 294
MaeIII GTNAC 4 cut(s) 85, 97, 305, 577
MalI GATC 3 cut(s) 195, 208, 641
MboI GATC 3 cut(s) 193, 206, 639
MboII GAAGA 7 cut(s) 115, 364, 546, 581, 607, 679, 688
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 3 cut(s) 382, 461, 532
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 3 cut(s) 394, 655, 787
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 3 cut(s) 28, 134, 224
MmeI TCCRAC 4 cut(s) 306, 345, 522, 744
Mox20I TGGCCA 1 cut(s) 596
Mph1103I ATGCAT 1 cut(s) 871
MreI CGCCGGCG 1 cut(s) 224
MroNI GCCGGC 1 cut(s) 224
MscI TGGCCA 1 cut(s) 596
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 303
MspI CCGG 4 cut(s) 23, 225, 286, 414
MspR9I CCNGG 5 cut(s) 23, 236, 241, 296, 598
Mva1269I GAATGC 1 cut(s) 822
MvaI CCWGG 4 cut(s) 236, 241, 296, 598
MvnI CGCG 3 cut(s) 138, 303, 848
MwoI GCNNNNNNNGC 6 cut(s) 23, 144, 386, 536, 598, 607
NaeI GCCGGC 1 cut(s) 226
NciI CCSGG 1 cut(s) 23
NdeII GATC 3 cut(s) 193, 206, 639
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 4 cut(s) 457, 478, 569, 862
NlaIV GGNNCC 4 cut(s) 380, 381, 586, 751
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 4 cut(s) 85, 97, 305, 577
NsbI TGCGCA 1 cut(s) 737
NsiI ATGCAT 1 cut(s) 871
NspI RCATGY 1 cut(s) 478
NspV TTCGAA 1 cut(s) 718
PceI AGGCCT 1 cut(s) 601
PcsI WCGNNNNNNNCGW 5 cut(s) 54, 102, 180, 189, 225
PctI GAATGC 1 cut(s) 822
PdiI GCCGGC 1 cut(s) 226
PfeI GAWTC 4 cut(s) 180, 278, 773, 881
PflFI GACNNNGTC 3 cut(s) 95, 296, 583
PkrI GCNGC 9 cut(s) 13, 16, 137, 190, 538, 564, 609, 700, 847
PleI GAGTC 3 cut(s) 28, 134, 224
PpsI GAGTC 3 cut(s) 28, 134, 224
PshAI GACNNNNGTC 1 cut(s) 686
Psp6I CCWGG 4 cut(s) 234, 239, 294, 596
PspEI GGTNACC 1 cut(s) 305
PspGI CCWGG 4 cut(s) 234, 239, 294, 596
PspN4I GGNNCC 4 cut(s) 380, 381, 586, 751
PspOMI GGGCCC 1 cut(s) 378
PspPI GGNCC 6 cut(s) 292, 298, 378, 379, 585, 749
PsuI RGATCY 1 cut(s) 206
PsyI GACNNNGTC 3 cut(s) 95, 296, 583
RsaI GTAC 1 cut(s) 805
RsaNI GTAC 1 cut(s) 804
SacII CCGCGG 1 cut(s) 304
SatI GCNGC 9 cut(s) 12, 15, 136, 189, 537, 563, 608, 699, 846
Sau3AI GATC 3 cut(s) 193, 206, 639
Sau96I GGNCC 6 cut(s) 292, 298, 378, 379, 585, 749
SchI GAGTC 3 cut(s) 28, 134, 224
ScrFI CCNGG 5 cut(s) 23, 236, 241, 296, 598
SduI GDGCHC 3 cut(s) 382, 461, 532
SexAI ACCWGGT 1 cut(s) 294
SfaNI GCATC 2 cut(s) 618, 619
Sfr303I CCGCGG 1 cut(s) 304
SfuI TTCGAA 1 cut(s) 718
SgrAI CRCCGGYG 1 cut(s) 224
SgrBI CCGCGG 1 cut(s) 304
SinI GGWCC 4 cut(s) 292, 298, 585, 749
SmlI CTYRAG 3 cut(s) 167, 691, 778
SmoI CTYRAG 3 cut(s) 167, 691, 778
Sse9I AATT 3 cut(s) 394, 655, 787
SseBI AGGCCT 1 cut(s) 601
SsiI CCGC 8 cut(s) 133, 136, 189, 301, 303, 575, 608, 846
StuI AGGCCT 1 cut(s) 601
StyD4I CCNGG 5 cut(s) 21, 234, 239, 294, 596
TaaI ACNGT 4 cut(s) 106, 326, 506, 808
TaqI TCGA 5 cut(s) 183, 276, 430, 718, 743
TaqII GACCGA 1 cut(s) 698
TasI AATT 3 cut(s) 394, 655, 787
TatI WGTACW 1 cut(s) 803
TauI GCSGC 4 cut(s) 138, 191, 610, 848
TfiI GAWTC 4 cut(s) 180, 278, 773, 881
TscAI CASTG 2 cut(s) 331, 519
TseFI GTSAC 4 cut(s) 85, 97, 305, 577
TseI GCWGC 5 cut(s) 11, 14, 536, 562, 698
Tsp45I GTSAC 4 cut(s) 85, 97, 305, 577
TspDTI ATGAA 4 cut(s) 470, 582, 842, 855
TspGWI ACGGA 4 cut(s) 73, 103, 219, 577
TspRI CASTG 2 cut(s) 331, 519
Tth111I GACNNNGTC 3 cut(s) 95, 296, 583
VpaK11BI GGWCC 4 cut(s) 292, 298, 585, 749
XapI RAATTY 1 cut(s) 655
XceI RCATGY 1 cut(s) 478
Zsp2I ATGCAT 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.