AT3G03272

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016508
Physical Location & Seq
Reverse (-)
763657 .. 764437
781 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03272.1

Sequence Viewer

Length: 363 bp
ATGATGAAACCATTTTCTCTAGTACTCGTTCTTGTCCTCTCATCATCTTTAGCAAGTGCAACCGCATCCTCCTTATTCTCGCCTCCACTTCCATTTTCGCTCTCTTCCATCTTCGGTGGGATTATCGGTAACAGTGATAATAGCGAGTTAGCTAGGATGTGTTTTCCAGACCTAGGAGACGGAGAAGCCTGCGTGGCGGAAATCTTCGGTTCATTCTTTAGTCCTCAAATTACGATAGGACCAGAATGTTGCAAGGCCATTGTTGAGATCGACGAAGACTGTGCTCAAGCCATTTTTAAACCACTCAGCAATTCTTTCTTTAGTAGTTCTGTCAAGCAGTATTGCACTTACATCAATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

120

Amino Acids

12.75

Weight (kDa)

4.21

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 54 - 115 2.5e-13 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03272 AT5G17340
fragaria_vesca FvH4_1g21720
malus_domestica MD01G1086400.v1.1
prunus_persica Prupe.2G194700_v2.0.a1 Prupe.2G194800_v2.0.a1
rosa_multiflora Rmu_ssc0000197.1_g000089
rosa_roxburghii Rroxscaffold_2G00128080 Rroxscaffold_2G00128950
rosa_rugosa Rorug02G0198300 Rorug02G0198600
rosa_samantha Rh2BG266400 Rh2DG263900
rosa_wichuraiana Rw2G020020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 63, 197
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 173
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 1 cut(s) 255
AspA2I CCTAGG 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 239
AvaII GGWCC 1 cut(s) 239
AvrII CCTAGG 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 286
BccI CCATC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 3 cut(s) 20, 153, 173
BglI GCCNNNNNGGC 1 cut(s) 194
BlnI CCTAGG 1 cut(s) 172
BmcAI AGTACT 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmsI GCATC 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 2 cut(s) 65, 162
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 319
BshFI GGCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 171
BsmBI CGTCTC 1 cut(s) 171
BsnI GGCC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 2 cut(s) 63, 197
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 172
Bst4CI ACNGT 2 cut(s) 134, 281
Bst6I CTCTTC 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 305
BstF5I GGATG 2 cut(s) 65, 162
BstKTI GATC 1 cut(s) 270
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 282
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 2 cut(s) 65, 162
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 23
CviJI RGCY 4 cut(s) 152, 188, 257, 290
CviKI_1 RGCY 4 cut(s) 152, 188, 257, 290
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 305
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
DraI TTTAAA 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 171
FokI GGATG 2 cut(s) 52, 169
FspBI CTAG 3 cut(s) 20, 153, 173
HaeIII GGCC 1 cut(s) 257
Hpy188III TCNNGA 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 275
HpyCH4III ACNGT 2 cut(s) 134, 281
HpyCH4V TGCA 3 cut(s) 59, 252, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 305
Kzo9I GATC 1 cut(s) 267
LpnPI CCDG 3 cut(s) 180, 202, 255
LweI GCATC 1 cut(s) 74
MaeI CTAG 3 cut(s) 20, 153, 173
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 4 cut(s) 96, 103, 196, 287
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 2 cut(s) 228, 310
MnlI CCTC 4 cut(s) 47, 79, 93, 234
MseI TTAA 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 239
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 297
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 1 cut(s) 239
ScaI AGTACT 1 cut(s) 24
SduI GDGCHC 1 cut(s) 286
SetI ASST 2 cut(s) 154, 174
SfaNI GCATC 1 cut(s) 74
SinI GGWCC 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 2 cut(s) 228, 310
SsiI CCGC 2 cut(s) 63, 197
SspMI CTAG 3 cut(s) 20, 153, 173
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 2 cut(s) 134, 281
TaqI TCGA 1 cut(s) 270
TasI AATT 2 cut(s) 228, 310
TatI WGTACW 1 cut(s) 22
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 20, 201
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 239
XmaJI CCTAGG 1 cut(s) 172
XspI CTAG 3 cut(s) 20, 153, 173
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.