MD01G1086400.v1.1

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016508
Physical Location & Seq
Forward (+)
19492203 .. 19492592
390 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1086400.v1.1.491

Sequence Viewer

Length: 390 bp
ATGGTGAAGGGAGGAGTTGCTGTGTTTTTCCTTCTCTTTTGCGTATTATTGACACAATGTTTGGCTGCTTCCGATTCCACAGCTCCTGCAGCACCCCAAACACCCGCATCCCCAAAGTACTCACGGTGGAACCCTGATCCTAAGCTTGTAAAGTGCCTTGGAGCTTACCACACTACCTCCGCAACTTGTTACCATGAGATTTCCGTATCTTACTGGACTCGCAAAGTCGCCATTCAAGAAGATTGCTGCAAGGCCATTGTAGAAATGGACGACGATTGCGCCAACTACGTTTTCTACAAGTTCCACAACTGCTTCTTCCAAGCTCTGTTAAAGAATCATTGCTTCAGCAAAGCTTCACCTTCACCTTCACCGGCACCCACAAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

130

Amino Acids

14.22

Weight (kDa)

8.37

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 51 - 114 3.2e-07 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03272 AT5G17340
fragaria_vesca FvH4_1g21720
malus_domestica MD01G1086400.v1.1
prunus_persica Prupe.2G194700_v2.0.a1 Prupe.2G194800_v2.0.a1
rosa_multiflora Rmu_ssc0000197.1_g000089
rosa_roxburghii Rroxscaffold_2G00128080 Rroxscaffold_2G00128950
rosa_rugosa Rorug02G0198300 Rorug02G0198600
rosa_samantha Rh2BG266400 Rh2DG263900
rosa_wichuraiana Rw2G020020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 373
AciI CCGC 2 cut(s) 105, 180
AclWI GGATC 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 328
AfaI GTAC 1 cut(s) 119
AgsI TTSAA 1 cut(s) 236
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 6 cut(s) 83, 145, 164, 323, 353, 386
AluI AGCT 6 cut(s) 83, 145, 164, 323, 353, 386
AlwI GGATC 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 86
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 3 cut(s) 65, 89, 246
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
AspLEI GCGC 1 cut(s) 281
AsuHPI GGTGA 4 cut(s) 16, 348, 354, 360
BanI GGYRCC 1 cut(s) 373
BbvI GCAGC 3 cut(s) 52, 101, 233
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 3 cut(s) 66, 90, 247
BlsI GCNGC 3 cut(s) 67, 91, 248
BmcAI AGTACT 1 cut(s) 119
BmiI GGNNCC 2 cut(s) 131, 375
BmsI GCATC 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 157
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 161, 191
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 337
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 3 cut(s) 52, 101, 233
BshFI GGCC 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 373
BsiSI CCGG 1 cut(s) 371
BsnI GGCC 1 cut(s) 254
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 2 cut(s) 105, 180
BspANI GGCC 1 cut(s) 254
BspLI GGNNCC 2 cut(s) 131, 375
BspMAI CTGCAG 1 cut(s) 91
BspPI GGATC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 373
BsrDI GCAATG 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 3 cut(s) 52, 101, 233
BsuRI GGCC 1 cut(s) 254
BtsCI GGATG 1 cut(s) 107
CaiI CAGNNNCTG 1 cut(s) 86
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 370
Csp6I GTAC 1 cut(s) 118
CviAII CATG 1 cut(s) 194
CviJI RGCY 8 cut(s) 65, 83, 145, 164, 254, 323, 353, 386
CviKI_1 RGCY 8 cut(s) 65, 83, 145, 164, 254, 323, 353, 386
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 1 cut(s) 141
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 1 cut(s) 197
FaiI YATR 1 cut(s) 195
FatI CATG 1 cut(s) 193
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 66, 90, 247
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 3 cut(s) 66, 90, 247
GlaI GCGC 1 cut(s) 280
GluI GCNGC 3 cut(s) 66, 90, 247
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 371
HhaI GCGC 1 cut(s) 281
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HindIII AAGCTT 3 cut(s) 143, 351, 384
HinfI GANTC 3 cut(s) 74, 217, 334
HpaII CCGG 1 cut(s) 371
HphI GGTGA 4 cut(s) 16, 348, 354, 360
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 236
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 3 cut(s) 41, 369, 375
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 2 cut(s) 89, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 1 cut(s) 279
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 2 cut(s) 88, 161
LpnPI CCDG 4 cut(s) 99, 147, 199, 384
Lsp1109I GCAGC 3 cut(s) 52, 101, 233
LweI GCATC 1 cut(s) 116
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 188
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 2 cut(s) 251, 307
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 2 cut(s) 5, 187
MseI TTAA 2 cut(s) 329, 388
MspI CCGG 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 1 cut(s) 136
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 2 cut(s) 131, 375
PfeI GAWTC 2 cut(s) 74, 334
PkrI GCNGC 3 cut(s) 67, 91, 248
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 131, 375
PstI CTGCAG 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 86
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 329, 388
SatI GCNGC 3 cut(s) 66, 90, 247
Sau3AI GATC 1 cut(s) 136
ScaI AGTACT 1 cut(s) 119
SchI GAGTC 1 cut(s) 211
SfaNI GCATC 1 cut(s) 116
SfcI CTRYAG 1 cut(s) 87
SsiI CCGC 2 cut(s) 105, 180
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 291
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 2 cut(s) 74, 334
Tru1I TTAA 2 cut(s) 329, 388
Tru9I TTAA 2 cut(s) 329, 388
TseI GCWGC 3 cut(s) 65, 89, 246
TspGWI ACGGA 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
ZrmI AGTACT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.