AT5G17340

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016508
Physical Location & Seq
Reverse (-)
5715624 .. 5716268
645 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17340.1

Sequence Viewer

Length: 483 bp
ATGAAGAATCTCGCAATTCTTGTTGTTGCCATGATACTCTTCTCAAGCTGTGTCACATCTCAAGTCACAGCAAAAAATGTGGATTCATTTCCATTACGTACTGAAGAGCTCGAATGGTGGCATTACAATCCTTTCTACCCTCACTTTTACCCTAAGCCACATTGGCCATTCCCCACCACCGGAAAGGCTCTCCCACCAATCCCAGCCGGCTTCCACCCGATTCCATTCCATCCACCACCGGTTGTAACCAAATGCTTGGCCGATTGCAAGGATGTAAAAACATGTTTGGCGGATATCGCTAAAGCTTTCTTCACCCGCAAACCAGCTATTGGATTGGATTGTTGCGCCTCCATCCAGAAGATGGATGAAGATTGTGATAAGACTGTCTTTGGAGCCTACCACAACCCTTTCTTTGACTGTGTGGTTAAGCTTCATTGCTCTACCAAAGCTAAATCCACTCCGTCTGCTCCCACTCCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

160

Amino Acids

17.81

Weight (kDa)

8.36

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 84 - 147 4.5e-10 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03272 AT5G17340
fragaria_vesca FvH4_1g21720
malus_domestica MD01G1086400.v1.1
prunus_persica Prupe.2G194700_v2.0.a1 Prupe.2G194800_v2.0.a1
rosa_multiflora Rmu_ssc0000197.1_g000089
rosa_roxburghii Rroxscaffold_2G00128080 Rroxscaffold_2G00128950
rosa_rugosa Rorug02G0198300 Rorug02G0198600
rosa_samantha Rh2BG266400 Rh2DG263900
rosa_wichuraiana Rw2G020020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 329, 361
AciI CCGC 2 cut(s) 290, 316
AcoI YGGCCR 2 cut(s) 164, 258
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 3 cut(s) 179, 329, 361
AflIII ACRYGT 1 cut(s) 281
AgeI ACCGGT 1 cut(s) 238
AluBI AGCT 7 cut(s) 48, 109, 305, 326, 430, 449, 479
AluI AGCT 7 cut(s) 48, 109, 305, 326, 430, 449, 479
Alw21I GWGCWC 1 cut(s) 111
AoxI GGCC 2 cut(s) 164, 258
AsiGI ACCGGT 1 cut(s) 238
AspLEI GCGC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 304
BalI TGGCCA 1 cut(s) 166
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BccI CCATC 3 cut(s) 237, 355, 359
BglI GCCNNNNNGGC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 394
BpmI CTGGAG 1 cut(s) 459
Bpu10I CCTNAGC 1 cut(s) 153
BpuEI CTTGAG 2 cut(s) 28, 45
BsaAI YACGTR 1 cut(s) 98
BsaWI WCCGGW 2 cut(s) 179, 238
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 329, 361
Bse118I RCCGGY 2 cut(s) 206, 238
Bse3DI GCAATG 1 cut(s) 433
BseGI GGATG 4 cut(s) 229, 277, 351, 370
BseLI CCNNNNNNNGG 3 cut(s) 179, 329, 361
BseMI GCAATG 1 cut(s) 433
BseYI CCCAGC 1 cut(s) 202
BshFI GGCC 2 cut(s) 166, 260
BshTI ACCGGT 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 3 cut(s) 180, 207, 239
BslI CCNNNNNNNGG 3 cut(s) 179, 329, 361
BsnI GGCC 2 cut(s) 166, 260
Bsp1286I GDGCHC 1 cut(s) 111
BspACI CCGC 2 cut(s) 290, 316
BspANI GGCC 2 cut(s) 166, 260
BspLI GGNNCC 1 cut(s) 394
BspQI GCTCTTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 433
BsrFI RCCGGY 2 cut(s) 206, 238
BssAI RCCGGY 2 cut(s) 206, 238
Bst4CI ACNGT 2 cut(s) 385, 419
Bst6I CTCTTC 2 cut(s) 44, 99
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 153, 480
BstF5I GGATG 4 cut(s) 229, 277, 351, 370
BstHHI GCGC 1 cut(s) 347
BstMWI GCNNNNNNNGC 2 cut(s) 163, 296
BstNSI RCATGY 1 cut(s) 285
BstSNI TACGTA 1 cut(s) 98
BstXI CCANNNNNNTGG 1 cut(s) 256
BsuRI GGCC 2 cut(s) 166, 260
BtsCI GGATG 4 cut(s) 229, 277, 351, 370
Cac8I GCNNGC 1 cut(s) 208
CfoI GCGC 1 cut(s) 347
Cfr10I RCCGGY 2 cut(s) 206, 238
Csp6I GTAC 1 cut(s) 99
CspAI ACCGGT 1 cut(s) 238
CspCI CAANNNNNGTGG 2 cut(s) 60, 95
CviAII CATG 2 cut(s) 31, 282
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 2 cut(s) 153, 480
EaeI YGGCCR 2 cut(s) 164, 258
Eam1104I CTCTTC 2 cut(s) 44, 99
EarI CTCTTC 2 cut(s) 44, 99
EciI GGCGGA 1 cut(s) 305
Ecl136II GAGCTC 1 cut(s) 109
Eco105I TACGTA 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 111
Eco32I GATATC 1 cut(s) 295
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 109
EcoRV GATATC 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 2 cut(s) 34, 285
FaiI YATR 2 cut(s) 32, 283
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 2 cut(s) 30, 281
FauI CCCGC 1 cut(s) 323
FokI GGATG 4 cut(s) 216, 284, 338, 377
FriOI GRGCYC 1 cut(s) 111
GlaI GCGC 1 cut(s) 346
GsaI CCCAGC 1 cut(s) 206
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 2 cut(s) 166, 260
HapII CCGG 3 cut(s) 180, 207, 239
HhaI GCGC 1 cut(s) 347
Hin1II CATG 2 cut(s) 34, 285
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HindIII AAGCTT 2 cut(s) 303, 428
HinfI GANTC 3 cut(s) 7, 83, 220
HpaII CCGG 3 cut(s) 180, 207, 239
HphI GGTGA 1 cut(s) 304
Hpy188III TCNNGA 1 cut(s) 355
HpyCH4III ACNGT 2 cut(s) 385, 419
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 267
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 296
HpyF3I CTNAG 2 cut(s) 153, 480
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 2 cut(s) 34, 285
HspAI GCGC 1 cut(s) 345
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 392, 472
LpnPI CCDG 6 cut(s) 193, 216, 220, 252, 336, 368
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 3 cut(s) 52, 64, 244
MboII GAAGA 6 cut(s) 16, 31, 116, 301, 370, 380
MhlI GDGCHC 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 166
MnlI CCTC 2 cut(s) 150, 358
Mox20I TGGCCA 1 cut(s) 166
MroNI GCCGGC 1 cut(s) 206
MscI TGGCCA 1 cut(s) 166
MseI TTAA 1 cut(s) 426
Msp20I TGGCCA 1 cut(s) 166
MspI CCGG 3 cut(s) 180, 207, 239
MwoI GCNNNNNNNGC 2 cut(s) 163, 296
NaeI GCCGGC 1 cut(s) 208
NgoMIV GCCGGC 1 cut(s) 206
NlaIII CATG 2 cut(s) 34, 285
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 2 cut(s) 52, 64
NspI RCATGY 1 cut(s) 285
PciI ACATGT 1 cut(s) 281
PciSI GCTCTTC 1 cut(s) 99
PdiI GCCGGC 1 cut(s) 208
PfeI GAWTC 3 cut(s) 7, 83, 220
PflMI CCANNNNNTGG 2 cut(s) 329, 361
PinAI ACCGGT 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 98
PscI ACATGT 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 394
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SacI GAGCTC 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 426
SduI GDGCHC 1 cut(s) 111
SetI ASST 8 cut(s) 50, 100, 111, 307, 328, 432, 451, 481
SmlI CTYRAG 2 cut(s) 43, 60
SmoI CTYRAG 2 cut(s) 43, 60
SnaBI TACGTA 1 cut(s) 98
Sse9I AATT 1 cut(s) 15
SsiI CCGC 2 cut(s) 290, 316
SstI GAGCTC 1 cut(s) 111
TaaI ACNGT 2 cut(s) 385, 419
TaiI ACGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 111
TasI AATT 1 cut(s) 15
TfiI GAWTC 3 cut(s) 7, 83, 220
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TseFI GTSAC 2 cut(s) 52, 64
Tsp45I GTSAC 2 cut(s) 52, 64
TspDTI ATGAA 4 cut(s) 17, 75, 381, 422
TspGWI ACGGA 1 cut(s) 450
Van91I CCANNNNNTGG 2 cut(s) 329, 361
XceI RCATGY 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.