Rroxscaffold_2G00128080

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016508
Physical Location & Seq
Forward (+)
63661805 .. 63669605
7801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128080.1

Sequence Viewer

Length: 339 bp
ATGAAGAAAGGAGTTGCTGCTGTGCTACTCTTCCTTGCTTGTGCAGCCCTATTCTTGGCTGCTTCTGATGCTACTGCTGCACAGCCTCCGAAGCTACCTCCGCAGCAATCGGAGCACGCTAAGTTGCACAAGTGCATTGCTGCTTTCCACACCGCAAGGGGTACTTGTCTGAAGCAGATATATGCATCTTATTGGCATCGCAAATTCAATATTGGAGAAGATTGCTGCAAGGCCATTAGGGAAGCTGATGATGATTGTGCCGAGACCATTTTGGGCGGTGGGTGTTGGGATTTGAAGGCTACGATATTAGGGTTTCGTGGTTATGGTTTCGTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

112

Amino Acids

12.17

Weight (kDa)

8.72

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 44 - 92 8.5e-08 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03272 AT5G17340
fragaria_vesca FvH4_1g21720
malus_domestica MD01G1086400.v1.1
prunus_persica Prupe.2G194700_v2.0.a1 Prupe.2G194800_v2.0.a1
rosa_multiflora Rmu_ssc0000197.1_g000089
rosa_roxburghii Rroxscaffold_2G00128080 Rroxscaffold_2G00128950
rosa_rugosa Rorug02G0198300 Rorug02G0198600
rosa_samantha Rh2BG266400 Rh2DG263900
rosa_wichuraiana Rw2G020020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 101, 153, 276
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 2 cut(s) 208, 295
AluBI AGCT 2 cut(s) 94, 245
AluI AGCT 2 cut(s) 94, 245
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 257
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 7 cut(s) 17, 44, 59, 77, 103, 140, 225
ApoI RAATTY 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 7 cut(s) 4, 46, 56, 64, 115, 127, 212
BcoDI GTCTC 1 cut(s) 257
BisI GCNGC 7 cut(s) 18, 45, 60, 78, 104, 141, 226
BlsI GCNGC 7 cut(s) 19, 46, 61, 79, 105, 142, 227
BmsI GCATC 3 cut(s) 58, 194, 205
BsaI GGTCTC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse3DI GCAATG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 1 cut(s) 135
BseXI GCAGC 7 cut(s) 4, 46, 56, 64, 115, 127, 212
BsgI GTGCAG 2 cut(s) 63, 63
BshFI GGCC 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 117
BspACI CCGC 3 cut(s) 101, 153, 276
BspANI GGCC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 120
BstMAI GTCTC 1 cut(s) 257
BstMWI GCNNNNNNNGC 6 cut(s) 44, 68, 77, 91, 100, 112
BstV1I GCAGC 7 cut(s) 4, 46, 56, 64, 115, 127, 212
BsuRI GGCC 1 cut(s) 233
BtgZI GCGATG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 117
Csp6I GTAC 1 cut(s) 162
CviJI RGCY 7 cut(s) 47, 59, 85, 94, 233, 245, 299
CviKI_1 RGCY 7 cut(s) 47, 59, 85, 94, 233, 245, 299
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 187
FaiI YATR 3 cut(s) 181, 183, 324
FalI AAGNNNNNCTT 2 cut(s) 148, 180
Fnu4HI GCNGC 7 cut(s) 18, 45, 60, 78, 104, 141, 226
Fsp4HI GCNGC 7 cut(s) 18, 45, 60, 78, 104, 141, 226
GluI GCNGC 7 cut(s) 18, 45, 60, 78, 104, 141, 226
HaeIII GGCC 1 cut(s) 233
Hpy188I TCNGA 4 cut(s) 67, 90, 112, 171
HpyAV CCTTC 1 cut(s) 289
HpyCH4V TGCA 6 cut(s) 44, 80, 127, 135, 185, 228
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 68, 77, 91, 100, 112
HpyF3I CTNAG 1 cut(s) 120
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 7 cut(s) 4, 46, 56, 64, 115, 127, 212
LweI GCATC 3 cut(s) 58, 194, 205
MboII GAAGA 3 cut(s) 16, 22, 230
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 203
MnlI CCTC 2 cut(s) 96, 108
Mph1103I ATGCAT 1 cut(s) 187
MwoI GCNNNNNNNGC 6 cut(s) 44, 68, 77, 91, 100, 112
NmeAIII GCCGAG 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 187
PkrI GCNGC 7 cut(s) 19, 46, 61, 79, 105, 142, 227
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SatI GCNGC 7 cut(s) 18, 45, 60, 78, 104, 141, 226
SduI GDGCHC 1 cut(s) 117
SetI ASST 3 cut(s) 96, 100, 247
SfaNI GCATC 3 cut(s) 58, 194, 205
Sse9I AATT 1 cut(s) 203
SsiI CCGC 3 cut(s) 101, 153, 276
SspI AATATT 1 cut(s) 211
TaqI TCGA 1 cut(s) 334
TasI AATT 1 cut(s) 203
TseI GCWGC 7 cut(s) 17, 44, 59, 77, 103, 140, 225
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.